Wall clock time and date at job start Mon Mar 30 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36818 * 120.00128 * 2 1 4 4 H 1.08002 * 119.99954 * 149.57396 * 3 2 1 5 5 C 1.39068 * 120.00040 * 329.57472 * 3 2 1 6 6 N 1.31352 * 119.99920 * 351.04546 * 5 3 2 7 7 Si 1.86797 * 120.00018 * 171.04459 * 5 3 2 8 8 H 1.48498 * 109.47468 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47069 * 120.00341 * 7 5 3 10 10 H 1.48499 * 109.47029 * 239.99700 * 7 5 3 11 11 C 1.34780 * 119.99979 * 180.02562 * 2 1 3 12 12 O 1.21660 * 120.00159 * 179.97438 * 11 2 1 13 13 C 1.46955 * 120.00169 * 359.97438 * 11 2 1 14 14 C 1.33117 * 119.99767 * 179.97438 * 13 11 2 15 15 C 1.50704 * 119.99458 * 179.97438 * 14 13 11 16 16 C 1.54245 * 108.89955 * 242.88250 * 15 14 13 17 17 C 1.50469 * 108.52611 * 159.26464 * 16 15 14 18 18 C 1.54069 * 112.49743 * 94.15367 * 17 16 15 19 19 C 1.54067 * 112.81742 * 318.28415 * 18 17 16 20 20 C 1.50472 * 112.49276 * 318.28273 * 19 18 17 21 21 C 1.45551 * 108.89402 * 120.00330 * 15 14 13 22 22 H 1.08999 * 109.46990 * 95.40466 * 1 2 3 23 23 H 1.09004 * 109.46987 * 215.39935 * 1 2 3 24 24 H 1.09000 * 109.46735 * 335.39789 * 1 2 3 25 25 H 0.96997 * 119.99930 * 180.02562 * 6 5 3 26 26 H 1.08001 * 119.99669 * 0.02562 * 13 11 2 27 27 H 1.07992 * 120.00612 * 0.02562 * 14 13 11 28 28 H 1.08998 * 108.87873 * 1.40189 * 15 14 13 29 29 H 1.08998 * 109.62976 * 278.97948 * 16 15 14 30 30 H 1.09000 * 109.62366 * 39.55183 * 16 15 14 31 31 H 1.08992 * 108.87835 * 333.37260 * 17 16 15 32 32 H 1.09004 * 108.87311 * 214.92970 * 17 16 15 33 33 H 1.09000 * 108.81013 * 197.41893 * 18 17 16 34 34 H 1.09000 * 108.72390 * 79.08122 * 18 17 16 35 35 H 1.08999 * 108.87603 * 197.51046 * 19 18 17 36 36 H 1.08999 * 108.79799 * 79.00553 * 19 18 17 37 37 H 1.09004 * 109.63235 * 334.44649 * 20 19 18 38 38 H 1.08999 * 109.62888 * 213.86443 * 20 19 18 39 39 H 1.08998 * 108.89031 * 303.43640 * 21 15 14 40 40 H 1.08995 * 108.89343 * 61.93030 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1849 0.0000 4 1 3.1176 1.2492 0.4737 5 6 1.5974 2.3063 -0.6099 6 7 0.5084 2.1906 -1.3351 7 14 2.4051 3.9772 -0.3978 8 1 3.6103 3.8394 0.4588 9 1 2.8011 4.5080 -1.7270 10 1 1.4462 4.9127 0.2430 11 6 2.1389 -1.1672 -0.0005 12 8 3.3555 -1.1673 -0.0010 13 6 1.4041 -2.4399 -0.0005 14 6 2.0698 -3.5927 -0.0016 15 6 1.3162 -4.8978 -0.0010 16 6 1.6440 -5.6634 1.2974 17 6 0.5542 -6.6705 1.5466 18 6 0.8959 -8.0615 0.9788 19 6 1.5515 -7.9938 -0.4137 20 6 0.8973 -6.9768 -1.3092 21 6 1.6755 -5.6500 -1.1941 22 1 -0.3633 -0.0968 -1.0231 23 1 -0.3633 -0.8377 0.5953 24 1 -0.3633 0.9344 0.4278 25 1 0.1238 2.9727 -1.7608 26 1 0.3241 -2.4399 -0.0005 27 1 3.1497 -3.5927 -0.0020 28 1 0.2470 -4.6877 -0.0249 29 1 2.5992 -6.1769 1.1885 30 1 1.6941 -4.9641 2.1319 31 1 -0.3661 -6.3165 1.0823 32 1 0.3938 -6.7579 2.6212 33 1 -0.0208 -8.6469 0.9078 34 1 1.5793 -8.5613 1.6652 35 1 1.4819 -8.9745 -0.8843 36 1 2.6033 -7.7340 -0.2945 37 1 -0.1356 -6.8237 -0.9962 38 1 0.9221 -7.3274 -2.3409 39 1 1.4650 -5.0400 -2.0725 40 1 2.7430 -5.8682 -1.1656 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845351177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:35 Heat of formation + Delta-G solvation = -38.879853 kcal Electronic energy + Delta-G solvation = -18479.225811 eV Core-core repulsion = 15679.518367 eV Total energy + Delta-G solvation = -2799.707445 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.27184 -38.21234 -34.79649 -33.98852 -32.15204 -31.64161 -30.23106 -26.38582 -25.28686 -24.71530 -24.08648 -21.41082 -20.03495 -19.31030 -18.09485 -16.86576 -16.35465 -15.57764 -14.88612 -14.63270 -14.48496 -14.14229 -13.79631 -13.72168 -13.02430 -12.97855 -12.64698 -12.18320 -12.14211 -11.79731 -11.50134 -11.30324 -11.16200 -10.92824 -10.84694 -10.72300 -10.51457 -10.39901 -10.35415 -10.31463 -10.25506 -10.13015 -9.00425 -8.64467 -8.35507 -7.55486 -6.31805 -3.89123 2.23849 3.19218 3.26305 3.33470 4.15112 4.47876 4.52396 4.67660 4.78747 4.95431 5.10496 5.17291 5.21269 5.23459 5.30783 5.39064 5.43925 5.68964 5.72475 5.75988 5.96609 5.98773 6.01395 6.09718 6.11504 6.15625 6.20786 6.24093 6.36205 6.42044 6.47145 6.50544 6.85091 7.10718 7.13349 7.20615 7.56429 8.23489 8.54958 9.23116 9.44835 10.07125 10.73506 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.051142 B = 0.003946 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.363759 B = 7094.917382 C = 7144.991378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.439 5.439 3 C -0.304 4.304 4 H 0.096 0.904 5 C 0.031 3.969 6 N -0.879 5.879 7 Si 0.927 3.073 8 H -0.267 1.267 9 H -0.281 1.281 10 H -0.281 1.281 11 C 0.471 3.529 12 O -0.595 6.595 13 C -0.177 4.177 14 C -0.113 4.113 15 C -0.053 4.053 16 C -0.109 4.109 17 C -0.118 4.118 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.116 4.116 21 C -0.112 4.112 22 H 0.052 0.948 23 H 0.028 0.972 24 H 0.070 0.930 25 H 0.268 0.732 26 H 0.113 0.887 27 H 0.119 0.881 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.854 -16.586 2.598 17.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.156 5.156 3 C -0.432 4.432 4 H 0.114 0.886 5 C -0.172 4.172 6 N -0.518 5.518 7 Si 0.753 3.247 8 H -0.191 1.191 9 H -0.207 1.207 10 H -0.206 1.206 11 C 0.262 3.738 12 O -0.482 6.482 13 C -0.198 4.198 14 C -0.134 4.134 15 C -0.072 4.072 16 C -0.146 4.146 17 C -0.156 4.156 18 C -0.153 4.153 19 C -0.157 4.157 20 C -0.154 4.154 21 C -0.149 4.149 22 H 0.070 0.930 23 H 0.047 0.953 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.131 0.869 27 H 0.137 0.863 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.419 -16.390 2.495 16.928 hybrid contribution 0.055 0.981 -0.082 0.986 sum -3.364 -15.409 2.413 15.955 Atomic orbital electron populations 1.21482 0.81509 0.99830 1.00436 1.43448 1.05399 1.04855 1.61896 1.19659 1.04150 0.85615 1.33802 0.88637 1.25457 0.96617 1.00376 0.94778 1.69937 1.20956 1.30578 1.30326 0.85855 0.79268 0.81310 0.78245 1.19149 1.20655 1.20643 1.18335 0.87532 0.84070 0.83881 1.90592 1.13789 1.87381 1.56430 1.22960 0.99610 0.93757 1.03477 1.23461 1.00378 0.92667 0.96879 1.19282 0.99587 0.93143 0.95159 1.21349 0.98942 0.97229 0.97098 1.21342 0.99145 0.94807 1.00302 1.21912 1.00220 0.96948 0.96261 1.21356 1.00350 0.98847 0.95122 1.21327 0.99878 0.95096 0.99081 1.20504 1.00451 0.95950 0.98026 0.92967 0.95334 0.91148 0.92235 0.86920 0.86319 0.91179 0.91549 0.91556 0.92033 0.92457 0.92623 0.92568 0.92733 0.91971 0.91667 0.92109 0.91943 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.56 8.28 59.85 0.50 3.06 16 2 N -0.44 -11.80 2.98 -123.60 -0.37 -12.17 16 3 C -0.30 -8.77 9.10 -15.02 -0.14 -8.91 16 4 H 0.10 2.87 7.55 -52.49 -0.40 2.47 16 5 C 0.03 0.85 5.10 -17.45 -0.09 0.76 16 6 N -0.88 -24.02 11.03 55.50 0.61 -23.41 16 7 Si 0.93 21.12 29.56 -169.99 -5.03 16.09 16 8 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 9 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 11 C 0.47 12.29 7.57 -12.73 -0.10 12.19 16 12 O -0.60 -17.52 16.00 5.22 0.08 -17.44 16 13 C -0.18 -3.56 8.81 -37.84 -0.33 -3.89 16 14 C -0.11 -1.96 8.10 -36.09 -0.29 -2.25 16 15 C -0.05 -0.69 2.00 -94.63 -0.19 -0.88 16 16 C -0.11 -1.25 4.97 -27.34 -0.14 -1.39 16 17 C -0.12 -1.15 5.31 -27.44 -0.15 -1.29 16 18 C -0.12 -1.00 5.85 -25.62 -0.15 -1.15 16 19 C -0.12 -1.06 5.32 -27.44 -0.15 -1.21 16 20 C -0.12 -1.13 5.61 -27.34 -0.15 -1.28 16 21 C -0.11 -1.33 4.43 -29.59 -0.13 -1.46 16 22 H 0.05 1.23 7.80 -51.93 -0.40 0.82 16 23 H 0.03 0.55 6.42 -51.93 -0.33 0.21 16 24 H 0.07 1.68 7.05 -51.93 -0.37 1.32 16 25 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 26 H 0.11 2.01 6.14 -52.49 -0.32 1.68 16 27 H 0.12 2.26 7.49 -52.49 -0.39 1.87 16 28 H 0.07 0.90 7.10 -51.93 -0.37 0.53 16 29 H 0.07 0.74 6.97 -51.93 -0.36 0.38 16 30 H 0.07 0.82 7.97 -51.93 -0.41 0.41 16 31 H 0.06 0.60 6.63 -51.93 -0.34 0.26 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.58 6.63 -51.93 -0.34 0.24 16 37 H 0.06 0.63 6.98 -51.93 -0.36 0.26 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 40 H 0.06 0.75 7.47 -51.93 -0.39 0.36 16 LS Contribution 310.66 15.07 4.68 4.68 Total: -1.00 -31.40 310.66 -7.99 -39.39 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -6.47 Total: 0.57 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: -1.50 Total: -7.71 kcal Atomic # 7 Polarization: -35.83 SS G_CDS: 0.24 Total: -35.59 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.08 Total: -17.44 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.40 -7.99 -39.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845351177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.509 kcal (2) G-P(sol) polarization free energy of solvation -31.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds