Wall clock time and date at job start Mon Mar 30 2020 06:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36818 * 120.00128 * 2 1 4 4 H 1.08002 * 119.99954 * 149.57396 * 3 2 1 5 5 C 1.39068 * 120.00040 * 329.57472 * 3 2 1 6 6 N 1.31352 * 119.99920 * 351.04546 * 5 3 2 7 7 Si 1.86797 * 120.00018 * 171.04459 * 5 3 2 8 8 H 1.48498 * 109.47468 * 0.02562 * 7 5 3 9 9 H 1.48504 * 109.47069 * 120.00341 * 7 5 3 10 10 H 1.48499 * 109.47029 * 239.99700 * 7 5 3 11 11 C 1.34780 * 119.99979 * 180.02562 * 2 1 3 12 12 O 1.21660 * 120.00159 * 179.97438 * 11 2 1 13 13 C 1.46955 * 120.00169 * 359.97438 * 11 2 1 14 14 C 1.33117 * 119.99767 * 179.97438 * 13 11 2 15 15 C 1.50704 * 119.99458 * 179.97438 * 14 13 11 16 16 C 1.54245 * 108.89955 * 242.88250 * 15 14 13 17 17 C 1.50469 * 108.52611 * 159.26464 * 16 15 14 18 18 C 1.54069 * 112.49743 * 94.15367 * 17 16 15 19 19 C 1.54067 * 112.81742 * 318.28415 * 18 17 16 20 20 C 1.50472 * 112.49276 * 318.28273 * 19 18 17 21 21 C 1.45551 * 108.89402 * 120.00330 * 15 14 13 22 22 H 1.08999 * 109.46990 * 95.40466 * 1 2 3 23 23 H 1.09004 * 109.46987 * 215.39935 * 1 2 3 24 24 H 1.09000 * 109.46735 * 335.39789 * 1 2 3 25 25 H 0.96997 * 119.99930 * 180.02562 * 6 5 3 26 26 H 1.08001 * 119.99669 * 0.02562 * 13 11 2 27 27 H 1.07992 * 120.00612 * 0.02562 * 14 13 11 28 28 H 1.08998 * 108.87873 * 1.40189 * 15 14 13 29 29 H 1.08998 * 109.62976 * 278.97948 * 16 15 14 30 30 H 1.09000 * 109.62366 * 39.55183 * 16 15 14 31 31 H 1.08992 * 108.87835 * 333.37260 * 17 16 15 32 32 H 1.09004 * 108.87311 * 214.92970 * 17 16 15 33 33 H 1.09000 * 108.81013 * 197.41893 * 18 17 16 34 34 H 1.09000 * 108.72390 * 79.08122 * 18 17 16 35 35 H 1.08999 * 108.87603 * 197.51046 * 19 18 17 36 36 H 1.08999 * 108.79799 * 79.00553 * 19 18 17 37 37 H 1.09004 * 109.63235 * 334.44649 * 20 19 18 38 38 H 1.08999 * 109.62888 * 213.86443 * 20 19 18 39 39 H 1.08998 * 108.89031 * 303.43640 * 21 15 14 40 40 H 1.08995 * 108.89343 * 61.93030 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1491 1.1849 0.0000 4 1 3.1176 1.2492 0.4737 5 6 1.5974 2.3063 -0.6099 6 7 0.5084 2.1906 -1.3351 7 14 2.4051 3.9772 -0.3978 8 1 3.6103 3.8394 0.4588 9 1 2.8011 4.5080 -1.7270 10 1 1.4462 4.9127 0.2430 11 6 2.1389 -1.1672 -0.0005 12 8 3.3555 -1.1673 -0.0010 13 6 1.4041 -2.4399 -0.0005 14 6 2.0698 -3.5927 -0.0016 15 6 1.3162 -4.8978 -0.0010 16 6 1.6440 -5.6634 1.2974 17 6 0.5542 -6.6705 1.5466 18 6 0.8959 -8.0615 0.9788 19 6 1.5515 -7.9938 -0.4137 20 6 0.8973 -6.9768 -1.3092 21 6 1.6755 -5.6500 -1.1941 22 1 -0.3633 -0.0968 -1.0231 23 1 -0.3633 -0.8377 0.5953 24 1 -0.3633 0.9344 0.4278 25 1 0.1238 2.9727 -1.7608 26 1 0.3241 -2.4399 -0.0005 27 1 3.1497 -3.5927 -0.0020 28 1 0.2470 -4.6877 -0.0249 29 1 2.5992 -6.1769 1.1885 30 1 1.6941 -4.9641 2.1319 31 1 -0.3661 -6.3165 1.0823 32 1 0.3938 -6.7579 2.6212 33 1 -0.0208 -8.6469 0.9078 34 1 1.5793 -8.5613 1.6652 35 1 1.4819 -8.9745 -0.8843 36 1 2.6033 -7.7340 -0.2945 37 1 -0.1356 -6.8237 -0.9962 38 1 0.9221 -7.3274 -2.3409 39 1 1.4650 -5.0400 -2.0725 40 1 2.7430 -5.8682 -1.1656 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845351177.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:21:35 Heat of formation + Delta-G solvation = -56.398980 kcal Electronic energy + Delta-G solvation = -18479.985497 eV Core-core repulsion = 15679.518367 eV Total energy + Delta-G solvation = -2800.467131 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.163 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.55764 -39.86701 -36.75760 -35.26805 -33.70663 -32.97171 -31.56354 -28.32073 -26.89981 -25.66993 -25.39679 -22.86718 -21.20171 -20.06479 -19.79958 -18.93060 -18.09407 -16.90749 -16.41452 -16.15480 -15.80841 -15.40986 -15.37766 -14.88134 -14.60881 -13.88403 -13.83223 -13.72255 -13.43918 -13.22667 -13.11267 -12.97245 -12.75500 -12.63727 -12.30157 -12.12560 -11.80558 -11.61744 -11.47801 -11.26056 -11.14289 -11.04480 -11.01249 -10.40329 -10.18835 -9.63272 -8.38943 -6.07020 0.61874 1.38272 1.39500 1.53448 2.25752 2.52568 3.07170 3.14813 3.66207 3.75882 3.99626 4.15685 4.18218 4.30682 4.37068 4.43503 4.46824 4.53885 4.59472 4.66097 4.82255 4.95102 5.00000 5.03351 5.14739 5.16205 5.27691 5.29715 5.38174 5.39069 5.39616 5.43249 5.47501 5.51875 5.62152 5.66468 5.68213 6.12732 6.49547 7.13319 7.41555 8.02083 8.65148 Molecular weight = 251.16amu Principal moments of inertia in cm(-1) A = 0.051142 B = 0.003946 C = 0.003918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 547.363759 B = 7094.917382 C = 7144.991378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.456 5.456 3 C -0.348 4.348 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.895 5.895 7 Si 0.993 3.007 8 H -0.273 1.273 9 H -0.274 1.274 10 H -0.261 1.261 11 C 0.458 3.542 12 O -0.645 6.645 13 C -0.203 4.203 14 C -0.075 4.075 15 C -0.046 4.046 16 C -0.106 4.106 17 C -0.116 4.116 18 C -0.114 4.114 19 C -0.120 4.120 20 C -0.109 4.109 21 C -0.114 4.114 22 H 0.044 0.956 23 H 0.069 0.931 24 H 0.056 0.944 25 H 0.276 0.724 26 H 0.142 0.858 27 H 0.098 0.902 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.281 -18.026 2.691 18.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.022 4.022 2 N -0.172 5.172 3 C -0.477 4.477 4 H 0.085 0.915 5 C -0.203 4.203 6 N -0.532 5.532 7 Si 0.816 3.184 8 H -0.198 1.198 9 H -0.199 1.199 10 H -0.186 1.186 11 C 0.251 3.749 12 O -0.535 6.535 13 C -0.224 4.224 14 C -0.096 4.096 15 C -0.064 4.064 16 C -0.143 4.143 17 C -0.154 4.154 18 C -0.152 4.152 19 C -0.158 4.158 20 C -0.147 4.147 21 C -0.151 4.151 22 H 0.062 0.938 23 H 0.087 0.913 24 H 0.075 0.925 25 H 0.085 0.915 26 H 0.159 0.841 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.892 -17.841 2.586 18.679 hybrid contribution 0.548 1.328 -0.131 1.443 sum -4.343 -16.513 2.454 17.250 Atomic orbital electron populations 1.21455 0.79417 1.00780 1.00541 1.43711 1.06827 1.04674 1.62017 1.19626 1.04269 0.87621 1.36146 0.91473 1.26240 0.97014 1.03353 0.93721 1.69998 1.21369 1.31930 1.29932 0.84892 0.78383 0.76828 0.78309 1.19797 1.19947 1.18558 1.19296 0.87410 0.85786 0.82439 1.90537 1.16072 1.88370 1.58553 1.22745 1.00606 0.91431 1.07623 1.23802 0.99685 0.94210 0.91891 1.19365 0.99508 0.90841 0.96712 1.21323 1.00068 0.97401 0.95527 1.21312 0.98240 0.94783 1.01056 1.21906 1.00919 0.96325 0.96018 1.21363 0.99854 0.99247 0.95314 1.21281 0.99738 0.93672 0.99984 1.20507 1.00796 0.97059 0.96753 0.93758 0.91301 0.92531 0.91470 0.84084 0.88440 0.89944 0.91318 0.92581 0.91704 0.91632 0.91424 0.92067 0.91401 0.92653 0.91057 0.91203 0.93026 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.57 8.28 127.77 1.06 6.63 16 2 N -0.46 -25.20 2.98 -663.19 -1.98 -27.18 16 3 C -0.35 -20.87 9.10 84.11 0.77 -20.10 16 4 H 0.07 4.29 7.55 -2.91 -0.02 4.27 16 5 C 0.00 -0.05 5.10 84.96 0.43 0.38 16 6 N -0.89 -48.91 11.03 21.68 0.24 -48.68 16 7 Si 0.99 43.60 29.56 68.60 2.03 45.62 16 8 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 9 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 11 C 0.46 24.66 7.57 86.53 0.66 25.32 16 12 O -0.64 -39.87 16.00 -4.22 -0.07 -39.93 16 13 C -0.20 -8.15 8.81 23.40 0.21 -7.94 16 14 C -0.07 -2.58 8.10 24.54 0.20 -2.38 16 15 C -0.05 -1.11 2.00 -13.39 -0.03 -1.14 16 16 C -0.11 -2.22 4.97 30.20 0.15 -2.07 16 17 C -0.12 -1.90 5.31 30.14 0.16 -1.74 16 18 C -0.11 -1.59 5.85 31.32 0.18 -1.41 16 19 C -0.12 -1.79 5.32 30.14 0.16 -1.63 16 20 C -0.11 -1.81 5.61 30.20 0.17 -1.64 16 21 C -0.11 -2.49 4.43 28.74 0.13 -2.36 16 22 H 0.04 2.08 7.80 -2.39 -0.02 2.06 16 23 H 0.07 2.55 6.42 -2.39 -0.02 2.54 16 24 H 0.06 2.72 7.05 -2.39 -0.02 2.70 16 25 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 26 H 0.14 4.77 6.14 -2.91 -0.02 4.75 16 27 H 0.10 3.80 7.49 -2.91 -0.02 3.78 16 28 H 0.08 1.86 7.10 -2.39 -0.02 1.84 16 29 H 0.07 1.42 6.97 -2.39 -0.02 1.40 16 30 H 0.06 1.30 7.97 -2.39 -0.02 1.28 16 31 H 0.06 1.04 6.63 -2.39 -0.02 1.02 16 32 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 36 H 0.05 0.91 6.63 -2.39 -0.02 0.89 16 37 H 0.07 1.12 6.98 -2.39 -0.02 1.10 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.05 1.24 8.10 -2.39 -0.02 1.22 16 40 H 0.06 1.34 7.47 -2.39 -0.02 1.32 16 Total: -1.00 -70.29 310.66 5.46 -64.83 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: 1.00 Total: 15.42 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: 4.24 Total: -10.08 kcal Atomic # 7 Polarization: -74.12 SS G_CDS: -1.74 Total: -75.86 kcal Atomic # 8 Polarization: -39.87 SS G_CDS: -0.07 Total: -39.93 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Total: -70.29 5.46 -64.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845351177.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.428 kcal (2) G-P(sol) polarization free energy of solvation -70.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds