Wall clock time and date at job start Mon Mar 30 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46924 * 2 1 4 4 C 1.50710 * 109.46905 * 179.97438 * 3 2 1 5 5 C 1.39010 * 126.77118 * 269.97521 * 4 3 2 6 6 C 1.41488 * 126.02253 * 0.03799 * 5 4 3 7 7 H 1.08000 * 120.00479 * 359.72274 * 6 5 4 8 8 C 1.39745 * 120.00123 * 179.97438 * 6 5 4 9 9 N 1.30983 * 119.99866 * 359.72068 * 8 6 5 10 10 Si 1.86798 * 119.99961 * 179.72636 * 8 6 5 11 11 H 1.48490 * 109.47339 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47239 * 120.00123 * 10 8 6 13 13 H 1.48504 * 109.46636 * 239.99682 * 10 8 6 14 14 N 1.34844 * 107.95770 * 180.29749 * 5 4 3 15 15 N 1.28674 * 109.63153 * 359.55606 * 14 5 4 16 16 N 1.35016 * 126.76933 * 90.01671 * 4 3 2 17 17 C 1.46499 * 126.49317 * 359.96914 * 16 4 3 18 18 H 1.09000 * 109.47010 * 359.97438 * 17 16 4 19 19 C 1.53003 * 109.47303 * 119.99435 * 17 16 4 20 20 C 1.53006 * 109.47001 * 239.99612 * 17 16 4 21 21 C 1.52999 * 109.46761 * 60.00232 * 20 17 16 22 22 C 1.52997 * 109.47086 * 179.97438 * 20 17 16 23 23 H 1.09004 * 109.47652 * 300.00262 * 1 2 3 24 24 H 1.09004 * 109.47560 * 60.00158 * 1 2 3 25 25 H 1.08996 * 109.47596 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47035 * 240.00228 * 2 1 3 27 27 H 1.08999 * 109.46865 * 119.99852 * 2 1 3 28 28 H 1.08995 * 109.47078 * 60.00255 * 3 2 1 29 29 H 1.08999 * 109.47229 * 299.99629 * 3 2 1 30 30 H 0.97000 * 120.00385 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46958 * 60.00127 * 19 17 16 32 32 H 1.09003 * 109.46966 * 179.97438 * 19 17 16 33 33 H 1.08994 * 109.47573 * 300.00044 * 19 17 16 34 34 H 1.08994 * 109.47036 * 300.00202 * 20 17 16 35 35 H 1.08999 * 109.47055 * 299.99568 * 21 20 17 36 36 H 1.08994 * 109.47370 * 60.00175 * 21 20 17 37 37 H 1.09000 * 109.46671 * 180.02562 * 21 20 17 38 38 H 1.09004 * 109.47242 * 60.00375 * 22 20 17 39 39 H 1.09000 * 109.47074 * 179.97438 * 22 20 17 40 40 H 1.09000 * 109.47149 * 300.00119 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3787 1.4432 1.1145 6 6 3.9596 1.4432 2.4659 7 1 2.9063 1.4472 2.7047 8 6 4.9085 1.4434 3.4918 9 7 6.1859 1.4379 3.2023 10 14 4.3551 1.4511 5.2759 11 1 2.8714 1.4570 5.3339 12 1 4.8730 0.2392 5.9600 13 1 4.8814 2.6641 5.9520 14 7 5.6553 1.4496 0.6802 15 7 5.6742 1.4435 -0.6064 16 7 4.3557 1.4427 -1.0806 17 6 3.9344 1.4423 -2.4837 18 1 2.8456 1.4413 -2.5361 19 6 4.4778 2.6917 -3.1798 20 6 4.4791 0.1931 -3.1793 21 6 3.9355 -1.0562 -2.4832 22 6 4.0386 0.1923 -4.6445 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 6.8446 1.4384 3.9143 31 1 5.5665 2.6922 -3.1274 32 1 4.1647 2.6911 -4.2239 33 1 4.0898 3.5815 -2.6843 34 1 5.5678 0.1937 -3.1268 35 1 4.2490 -1.0559 -1.4393 36 1 2.8469 -1.0568 -2.5357 37 1 4.3240 -1.9461 -2.9785 38 1 4.4255 1.0824 -5.1408 39 1 4.4271 -0.6973 -5.1402 40 1 2.9498 0.1916 -4.6966 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958542601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:23 Heat of formation + Delta-G solvation = 55.344488 kcal Electronic energy + Delta-G solvation = -19474.789983 eV Core-core repulsion = 16711.461163 eV Total energy + Delta-G solvation = -2763.328819 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.08405 -36.87082 -34.54281 -33.27526 -31.75208 -29.85934 -29.12014 -26.94865 -26.32815 -24.39843 -23.51485 -21.33060 -20.94959 -19.31787 -18.75404 -16.84850 -15.60560 -14.91206 -14.78740 -14.41123 -14.22106 -13.70861 -13.33717 -13.09143 -12.94524 -12.41411 -12.33157 -12.13978 -11.93570 -11.83785 -11.32101 -11.26720 -11.13625 -11.03458 -10.80287 -10.70079 -10.63287 -10.60272 -10.35880 -10.18420 -9.99288 -9.55567 -9.21189 -8.75613 -8.29905 -7.29125 -6.29310 -4.07403 2.91769 3.20113 3.24580 3.28295 3.67787 4.19235 4.39842 4.81122 5.06125 5.20291 5.39502 5.43864 5.47315 5.52895 5.59642 5.65042 5.67716 5.77290 5.86073 5.94123 5.96611 6.01866 6.04290 6.17855 6.22103 6.26321 6.34514 6.42281 6.46697 6.52443 6.59717 6.69983 6.88613 7.04589 7.26050 7.53417 7.62025 8.28773 8.51366 8.92464 9.17439 10.33089 10.67769 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.007388 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.448574 B = 3789.144065 C = 4528.797874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.013 4.013 4 C -0.110 4.110 5 C 0.152 3.848 6 C -0.450 4.450 7 H 0.079 0.921 8 C 0.073 3.927 9 N -0.778 5.778 10 Si 0.903 3.097 11 H -0.264 1.264 12 H -0.278 1.278 13 H -0.278 1.278 14 N -0.232 5.232 15 N -0.133 5.133 16 N -0.366 5.366 17 C 0.169 3.831 18 H 0.086 0.914 19 C -0.160 4.160 20 C -0.102 4.102 21 C -0.144 4.144 22 C -0.145 4.145 23 H 0.053 0.947 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.046 0.954 30 H 0.269 0.731 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.081 0.919 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.050 0.950 38 H 0.058 0.942 39 H 0.055 0.945 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.357 -1.832 -10.317 13.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.053 4.053 4 C -0.242 4.242 5 C 0.022 3.978 6 C -0.487 4.487 7 H 0.097 0.903 8 C -0.145 4.145 9 N -0.405 5.405 10 Si 0.728 3.272 11 H -0.188 1.188 12 H -0.203 1.203 13 H -0.204 1.204 14 N -0.103 5.103 15 N -0.108 5.108 16 N -0.162 5.162 17 C 0.064 3.936 18 H 0.104 0.896 19 C -0.218 4.218 20 C -0.121 4.121 21 C -0.201 4.201 22 C -0.203 4.203 23 H 0.072 0.928 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.069 0.931 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.602 -1.818 -10.629 12.644 hybrid contribution -1.286 0.011 1.068 1.672 sum -7.888 -1.807 -9.561 12.526 Atomic orbital electron populations 1.21783 0.96744 1.00846 1.01274 1.21613 0.94260 0.97721 1.02452 1.19603 0.88636 0.95971 1.01062 1.21394 0.93068 1.22217 0.87493 1.18963 0.85991 0.99590 0.93271 1.18534 0.93727 1.48722 0.87676 0.90266 1.25756 0.94630 0.93670 1.00472 1.70030 1.00713 1.36336 1.33432 0.86358 0.79663 0.78114 0.83038 1.18828 1.20346 1.20352 1.75104 1.20122 1.15450 0.99662 1.81439 0.96990 1.25402 1.07017 1.49521 1.06730 1.55571 1.04352 1.20991 0.98620 0.95247 0.78732 0.89620 1.22161 1.02802 0.97078 0.99724 1.21420 1.01769 0.94493 0.94453 1.21830 1.00305 0.96467 1.01540 1.21883 1.01148 1.01835 0.95409 0.92764 0.93462 0.93375 0.92659 0.91224 0.90630 0.93567 0.91993 0.91349 0.91476 0.92449 0.90068 0.91849 0.92948 0.93108 0.92281 0.92543 0.92755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.15 0.37 -1.57 16 2 C -0.12 -2.00 5.92 -26.73 -0.16 -2.15 16 3 C -0.01 -0.24 5.11 -27.88 -0.14 -0.38 16 4 C -0.11 -2.54 6.37 -80.90 -0.52 -3.05 16 5 C 0.15 4.21 6.72 -85.02 -0.57 3.64 16 6 C -0.45 -12.37 9.11 -37.78 -0.34 -12.72 16 7 H 0.08 2.03 7.30 -52.49 -0.38 1.65 16 8 C 0.07 1.98 5.49 -17.35 -0.10 1.88 16 9 N -0.78 -22.44 11.92 55.54 0.66 -21.78 16 10 Si 0.90 19.93 29.56 -169.99 -5.02 14.90 16 11 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 14 N -0.23 -6.78 10.56 32.05 0.34 -6.44 16 15 N -0.13 -3.45 13.62 60.35 0.82 -2.62 16 16 N -0.37 -7.92 2.52 -49.73 -0.13 -8.05 16 17 C 0.17 2.75 2.65 -67.93 -0.18 2.57 16 18 H 0.09 1.28 6.80 -51.93 -0.35 0.93 16 19 C -0.16 -2.33 9.11 37.16 0.34 -1.99 16 20 C -0.10 -1.49 2.64 -90.62 -0.24 -1.73 16 21 C -0.14 -2.19 8.53 37.16 0.32 -1.87 16 22 C -0.14 -1.57 8.84 37.16 0.33 -1.25 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.88 6.19 -51.93 -0.32 0.56 16 27 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 28 H 0.08 1.42 7.56 -51.93 -0.39 1.03 16 29 H 0.05 0.75 7.20 -51.93 -0.37 0.38 16 30 H 0.27 7.14 8.30 -40.82 -0.34 6.80 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.07 0.75 6.43 -51.93 -0.33 0.42 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.06 1.21 7.60 -51.93 -0.39 0.82 16 36 H 0.05 0.72 6.80 -51.93 -0.35 0.37 16 37 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 321.92 15.07 4.85 4.85 Total: -1.00 -31.22 321.92 -5.97 -37.19 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -6.60 Total: 0.57 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -0.89 Total: -18.62 kcal Atomic # 7 Polarization: -40.59 SS G_CDS: 1.70 Total: -38.90 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.22 -5.97 -37.19 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.535 kcal (2) G-P(sol) polarization free energy of solvation -31.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds