Wall clock time and date at job start Mon Mar 30 2020 06:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.46924 * 2 1 4 4 C 1.50710 * 109.46905 * 179.97438 * 3 2 1 5 5 C 1.39010 * 126.77118 * 269.97521 * 4 3 2 6 6 C 1.41488 * 126.02253 * 0.03799 * 5 4 3 7 7 H 1.08000 * 120.00479 * 359.72274 * 6 5 4 8 8 C 1.39745 * 120.00123 * 179.97438 * 6 5 4 9 9 N 1.30983 * 119.99866 * 359.72068 * 8 6 5 10 10 Si 1.86798 * 119.99961 * 179.72636 * 8 6 5 11 11 H 1.48490 * 109.47339 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47239 * 120.00123 * 10 8 6 13 13 H 1.48504 * 109.46636 * 239.99682 * 10 8 6 14 14 N 1.34844 * 107.95770 * 180.29749 * 5 4 3 15 15 N 1.28674 * 109.63153 * 359.55606 * 14 5 4 16 16 N 1.35016 * 126.76933 * 90.01671 * 4 3 2 17 17 C 1.46499 * 126.49317 * 359.96914 * 16 4 3 18 18 H 1.09000 * 109.47010 * 359.97438 * 17 16 4 19 19 C 1.53003 * 109.47303 * 119.99435 * 17 16 4 20 20 C 1.53006 * 109.47001 * 239.99612 * 17 16 4 21 21 C 1.52999 * 109.46761 * 60.00232 * 20 17 16 22 22 C 1.52997 * 109.47086 * 179.97438 * 20 17 16 23 23 H 1.09004 * 109.47652 * 300.00262 * 1 2 3 24 24 H 1.09004 * 109.47560 * 60.00158 * 1 2 3 25 25 H 1.08996 * 109.47596 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47035 * 240.00228 * 2 1 3 27 27 H 1.08999 * 109.46865 * 119.99852 * 2 1 3 28 28 H 1.08995 * 109.47078 * 60.00255 * 3 2 1 29 29 H 1.08999 * 109.47229 * 299.99629 * 3 2 1 30 30 H 0.97000 * 120.00385 * 179.97438 * 9 8 6 31 31 H 1.09000 * 109.46958 * 60.00127 * 19 17 16 32 32 H 1.09003 * 109.46966 * 179.97438 * 19 17 16 33 33 H 1.08994 * 109.47573 * 300.00044 * 19 17 16 34 34 H 1.08994 * 109.47036 * 300.00202 * 20 17 16 35 35 H 1.08999 * 109.47055 * 299.99568 * 21 20 17 36 36 H 1.08994 * 109.47370 * 60.00175 * 21 20 17 37 37 H 1.09000 * 109.46671 * 180.02562 * 21 20 17 38 38 H 1.09004 * 109.47242 * 60.00375 * 22 20 17 39 39 H 1.09000 * 109.47074 * 179.97438 * 22 20 17 40 40 H 1.09000 * 109.47149 * 300.00119 * 22 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 6 4.3787 1.4432 1.1145 6 6 3.9596 1.4432 2.4659 7 1 2.9063 1.4472 2.7047 8 6 4.9085 1.4434 3.4918 9 7 6.1859 1.4379 3.2023 10 14 4.3551 1.4511 5.2759 11 1 2.8714 1.4570 5.3339 12 1 4.8730 0.2392 5.9600 13 1 4.8814 2.6641 5.9520 14 7 5.6553 1.4496 0.6802 15 7 5.6742 1.4435 -0.6064 16 7 4.3557 1.4427 -1.0806 17 6 3.9344 1.4423 -2.4837 18 1 2.8456 1.4413 -2.5361 19 6 4.4778 2.6917 -3.1798 20 6 4.4791 0.1931 -3.1793 21 6 3.9355 -1.0562 -2.4832 22 6 4.0386 0.1923 -4.6445 23 1 -0.3634 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5138 0.8900 28 1 1.6766 1.9563 0.8900 29 1 1.6766 1.9563 -0.8900 30 1 6.8446 1.4384 3.9143 31 1 5.5665 2.6922 -3.1274 32 1 4.1647 2.6911 -4.2239 33 1 4.0898 3.5815 -2.6843 34 1 5.5678 0.1937 -3.1268 35 1 4.2490 -1.0559 -1.4393 36 1 2.8469 -1.0568 -2.5357 37 1 4.3240 -1.9461 -2.9785 38 1 4.4255 1.0824 -5.1408 39 1 4.4271 -0.6973 -5.1402 40 1 2.9498 0.1916 -4.6966 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958542601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:23 Heat of formation + Delta-G solvation = 36.256758 kcal Electronic energy + Delta-G solvation = -19475.617689 eV Core-core repulsion = 16711.461163 eV Total energy + Delta-G solvation = -2764.156526 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.94043 -38.24631 -35.98433 -35.19844 -33.30337 -31.48164 -30.70757 -28.28285 -27.67855 -26.25366 -24.94747 -22.74317 -22.52019 -21.00845 -20.36153 -18.66640 -17.23104 -16.79411 -16.25225 -15.78330 -15.51101 -15.14731 -14.81302 -14.77632 -14.25812 -13.85480 -13.59312 -13.36864 -13.17530 -13.00412 -12.88132 -12.85589 -12.63514 -12.50436 -12.33443 -12.08235 -12.00293 -11.89920 -11.87635 -11.64654 -11.39425 -11.34920 -11.12542 -10.68007 -10.12003 -9.27424 -8.26986 -6.13671 1.08870 1.42785 1.43504 1.58227 2.05118 2.34776 2.38616 3.54717 3.56649 3.86865 3.95940 4.08628 4.17708 4.23482 4.32688 4.38749 4.52129 4.63285 4.67957 4.73785 4.76771 4.81784 4.94243 4.94440 4.99551 5.07647 5.11553 5.13266 5.22803 5.24853 5.28985 5.32894 5.45803 5.49425 5.58525 5.59819 5.75795 6.44060 6.55591 6.95713 7.13818 8.38247 8.73140 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.007388 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.448574 B = 3789.144065 C = 4528.797874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C -0.014 4.014 4 C -0.078 4.078 5 C 0.103 3.897 6 C -0.478 4.478 7 H 0.088 0.912 8 C 0.019 3.981 9 N -0.831 5.831 10 Si 0.982 3.018 11 H -0.249 1.249 12 H -0.275 1.275 13 H -0.275 1.275 14 N -0.288 5.288 15 N -0.170 5.170 16 N -0.344 5.344 17 C 0.150 3.850 18 H 0.114 0.886 19 C -0.153 4.153 20 C -0.097 4.097 21 C -0.140 4.140 22 C -0.136 4.136 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.270 0.730 31 H 0.046 0.954 32 H 0.113 0.887 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.013 0.987 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.772 -1.955 -12.388 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C -0.054 4.054 4 C -0.214 4.214 5 C -0.030 4.030 6 C -0.515 4.515 7 H 0.106 0.894 8 C -0.194 4.194 9 N -0.460 5.460 10 Si 0.804 3.196 11 H -0.172 1.172 12 H -0.201 1.201 13 H -0.200 1.200 14 N -0.157 5.157 15 N -0.145 5.145 16 N -0.138 5.138 17 C 0.049 3.951 18 H 0.132 0.868 19 C -0.211 4.211 20 C -0.117 4.117 21 C -0.197 4.197 22 C -0.194 4.194 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.099 0.901 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.131 0.869 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.032 0.968 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.996 -1.941 -12.774 16.336 hybrid contribution -0.343 0.029 1.458 1.498 sum -10.340 -1.912 -11.316 15.447 Atomic orbital electron populations 1.21716 0.93378 1.02262 1.02471 1.21509 0.97055 0.95488 1.01282 1.19836 0.84989 0.98022 1.02562 1.22196 0.95239 1.17153 0.86769 1.19552 0.86623 1.01865 0.94996 1.18886 0.94324 1.49876 0.88412 0.89361 1.26728 0.94422 0.92904 1.05345 1.70202 1.02178 1.38802 1.34829 0.85162 0.79811 0.78006 0.76655 1.17212 1.20052 1.20004 1.75045 1.21736 1.17850 1.01048 1.81308 0.98915 1.28064 1.06211 1.49995 1.05532 1.51835 1.06464 1.21672 1.00373 0.97251 0.75852 0.86841 1.22146 1.01344 0.95527 1.02117 1.21390 1.00068 0.93087 0.97145 1.21795 1.01620 0.97687 0.98603 1.21836 1.02531 1.03176 0.91823 0.92661 0.91191 0.91925 0.92150 0.94266 0.90959 0.90125 0.92050 0.93499 0.86908 0.93268 0.92854 0.96808 0.90857 0.91464 0.90956 0.91376 0.90662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 9.91 71.98 0.71 -2.39 16 2 C -0.11 -3.50 5.92 30.59 0.18 -3.32 16 3 C -0.01 -0.50 5.11 29.85 0.15 -0.35 16 4 C -0.08 -3.62 6.37 42.26 0.27 -3.35 16 5 C 0.10 5.95 6.72 39.67 0.27 6.22 16 6 C -0.48 -27.31 9.11 23.44 0.21 -27.10 16 7 H 0.09 4.64 7.30 -2.91 -0.02 4.62 16 8 C 0.02 1.06 5.49 85.18 0.47 1.53 16 9 N -0.83 -50.82 11.92 21.80 0.26 -50.56 16 10 Si 0.98 42.27 29.56 68.60 2.03 44.30 16 11 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 12 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 13 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 14 N -0.29 -17.92 10.56 -52.52 -0.55 -18.47 16 15 N -0.17 -9.29 13.62 37.02 0.50 -8.79 16 16 N -0.34 -15.00 2.52 -311.26 -0.78 -15.78 16 17 C 0.15 4.57 2.65 44.99 0.12 4.69 16 18 H 0.11 2.87 6.80 -2.39 -0.02 2.85 16 19 C -0.15 -4.13 9.11 71.98 0.66 -3.47 16 20 C -0.10 -2.65 2.64 -10.79 -0.03 -2.68 16 21 C -0.14 -4.03 8.53 71.98 0.61 -3.41 16 22 C -0.14 -2.35 8.84 71.98 0.64 -1.71 16 23 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 24 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 25 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.76 6.19 -2.39 -0.01 1.74 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.07 2.61 7.56 -2.39 -0.02 2.59 16 29 H 0.08 2.27 7.20 -2.39 -0.02 2.25 16 30 H 0.27 15.21 8.30 -92.71 -0.77 14.44 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.11 2.02 6.43 -2.39 -0.02 2.00 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.01 0.50 7.60 -2.39 -0.02 0.48 16 36 H 0.07 1.77 6.80 -2.39 -0.02 1.76 16 37 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.07 1.08 6.43 -2.38 -0.02 1.06 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -75.12 321.92 6.72 -68.40 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: 1.00 Total: 16.24 kcal Atomic # 6 Polarization: -39.61 SS G_CDS: 4.26 Total: -35.34 kcal Atomic # 7 Polarization: -93.02 SS G_CDS: -0.58 Total: -93.59 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -75.12 6.72 -68.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958542601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.657 kcal (2) G-P(sol) polarization free energy of solvation -75.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds