Wall clock time and date at job start Mon Mar 30 2020 06:25:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47188 * 2 1 4 4 C 1.52999 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47192 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47188 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.46967 * 180.02562 * 6 5 4 8 8 N 1.40129 * 126.49037 * 90.02956 * 7 6 5 9 9 N 1.28668 * 108.93084 * 179.97438 * 8 7 6 10 10 C 1.34841 * 109.64111 * 0.02562 * 9 8 7 11 11 C 1.41486 * 126.02200 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99984 * 179.97438 * 11 10 9 13 13 C 1.39740 * 120.00243 * 359.96914 * 11 10 9 14 14 N 1.30979 * 119.99709 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47009 * 59.99890 * 15 13 11 17 17 H 1.48498 * 109.47092 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47359 * 300.00162 * 15 13 11 19 19 C 1.35012 * 126.49310 * 269.70990 * 7 6 5 20 20 C 1.50706 * 126.77348 * 0.02562 * 19 7 6 21 21 C 1.53005 * 109.47034 * 89.99738 * 20 19 7 22 22 H 1.09002 * 109.47109 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47573 * 300.00193 * 1 2 3 24 24 H 1.09001 * 109.47288 * 60.00241 * 1 2 3 25 25 H 1.08998 * 109.46882 * 239.99522 * 2 1 3 26 26 H 1.09000 * 109.46604 * 120.00056 * 2 1 3 27 27 H 1.08999 * 109.47022 * 59.99469 * 3 2 1 28 28 H 1.09001 * 109.46809 * 300.00051 * 3 2 1 29 29 H 1.08994 * 109.47135 * 59.99973 * 4 3 2 30 30 H 1.08997 * 109.46852 * 299.99598 * 4 3 2 31 31 H 1.09011 * 109.47030 * 59.99947 * 5 4 3 32 32 H 1.09005 * 109.47630 * 300.00252 * 5 4 3 33 33 H 1.08994 * 109.46812 * 60.00569 * 6 5 4 34 34 H 1.08997 * 109.47178 * 300.00192 * 6 5 4 35 35 H 0.96998 * 119.99788 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.46932 * 209.99486 * 20 19 7 37 37 H 1.08999 * 109.47055 * 329.99913 * 20 19 7 38 38 H 1.09005 * 109.46871 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.47056 * 299.99672 * 21 20 19 40 40 H 1.08990 * 109.47278 * 60.00047 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0013 7 7 6.0983 4.2662 0.0013 8 7 6.3756 5.0520 1.1279 9 7 6.7852 6.2084 0.7397 10 6 6.8018 6.2544 -0.6078 11 6 7.1933 7.3610 -1.3978 12 1 7.1691 7.2908 -2.4752 13 6 7.6110 8.5449 -0.7840 14 7 7.6406 8.6298 0.5227 15 14 8.1271 10.0061 -1.8270 16 1 6.9905 10.4282 -2.6845 17 1 8.5244 11.1303 -0.9418 18 1 9.2773 9.6211 -2.6838 19 6 6.3720 5.0211 -1.0841 20 6 6.2350 4.6093 -2.5273 21 6 4.8287 4.9512 -3.0239 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9285 -0.8891 30 1 3.9329 0.9288 0.8909 31 1 3.7162 3.3993 0.8896 32 1 3.7170 3.3983 -0.8904 33 1 5.9740 2.3705 -0.8880 34 1 5.9726 2.3717 0.8919 35 1 7.9309 9.4514 0.9488 36 1 6.9720 5.1417 -3.1286 37 1 6.4006 3.5356 -2.6161 38 1 4.7295 4.6529 -4.0676 39 1 4.0917 4.4188 -2.4226 40 1 4.6631 6.0248 -2.9351 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958544623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:43 Heat of formation + Delta-G solvation = 46.279083 kcal Electronic energy + Delta-G solvation = -18373.786030 eV Core-core repulsion = 15610.064105 eV Total energy + Delta-G solvation = -2763.721925 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.95616 -36.67002 -34.40040 -33.40704 -32.79349 -31.05938 -28.55494 -27.85874 -25.10490 -24.00581 -22.82170 -21.46286 -21.05764 -20.18980 -18.70486 -17.07018 -15.99813 -15.20100 -14.91369 -14.46568 -14.43520 -13.75397 -13.66837 -13.42809 -13.17930 -12.70904 -12.58546 -12.31930 -11.70876 -11.59622 -11.56380 -11.32889 -11.13176 -11.08565 -10.99339 -10.85306 -10.71490 -10.60235 -10.45776 -10.23264 -10.17829 -9.64303 -9.21787 -8.78788 -8.35141 -7.32660 -6.30379 -4.09487 2.89251 3.21355 3.23463 3.25225 3.68865 4.18278 4.37626 4.65597 4.77340 4.92499 5.03097 5.27497 5.29339 5.32756 5.56401 5.59053 5.62190 5.65317 5.69328 5.71527 5.73561 5.85631 5.89097 5.98897 6.01642 6.08624 6.18520 6.25130 6.33872 6.38129 6.45373 6.60494 6.86349 7.01279 7.21513 7.49611 7.59780 8.24618 8.48579 8.90183 9.15319 10.29097 10.66642 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.036475 B = 0.004300 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.463226 B = 6509.437101 C = 6795.993400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.120 4.120 4 C -0.115 4.115 5 C -0.136 4.136 6 C 0.139 3.861 7 N -0.376 5.376 8 N -0.137 5.137 9 N -0.230 5.230 10 C 0.152 3.848 11 C -0.452 4.452 12 H 0.079 0.921 13 C 0.073 3.927 14 N -0.778 5.778 15 Si 0.905 3.095 16 H -0.269 1.269 17 H -0.282 1.282 18 H -0.269 1.269 19 C -0.111 4.111 20 C -0.018 4.018 21 C -0.144 4.144 22 H 0.051 0.949 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.271 0.729 36 H 0.076 0.924 37 H 0.047 0.953 38 H 0.045 0.955 39 H 0.044 0.956 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.917 -13.175 -4.678 16.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.158 4.158 4 C -0.153 4.153 5 C -0.175 4.175 6 C 0.015 3.985 7 N -0.171 5.171 8 N -0.113 5.113 9 N -0.102 5.102 10 C 0.022 3.978 11 C -0.488 4.488 12 H 0.097 0.903 13 C -0.146 4.146 14 N -0.405 5.405 15 Si 0.731 3.269 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.194 1.194 19 C -0.242 4.242 20 C -0.058 4.058 21 C -0.202 4.202 22 H 0.070 0.930 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.063 0.937 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.836 -12.981 -2.889 15.966 hybrid contribution 0.176 0.560 -1.511 1.621 sum -8.659 -12.420 -4.400 15.767 Atomic orbital electron populations 1.21784 0.96098 1.01348 1.01850 1.21537 0.95690 0.97123 1.01873 1.21612 0.95402 0.96488 1.02264 1.21524 0.95417 0.96358 1.02029 1.22054 0.95073 0.96911 1.03418 1.21348 0.93938 0.80518 1.02688 1.49501 1.50147 1.11265 1.06207 1.81483 1.22420 0.99414 1.07964 1.75074 1.14434 1.08389 1.12282 1.18974 0.98667 0.91982 0.88179 1.18469 1.42189 0.94936 0.93182 0.90253 1.25769 0.94340 0.99516 0.94959 1.70010 1.34816 1.26581 1.09090 0.86440 0.79547 0.80717 0.80214 1.19373 1.20685 1.19385 1.21433 1.18619 0.94945 0.89251 1.19534 0.97303 0.98790 0.90178 1.21799 0.96916 1.02523 0.98932 0.92985 0.92781 0.92782 0.92132 0.92122 0.91960 0.91982 0.91933 0.91854 0.91266 0.91204 0.90458 0.90092 0.91809 0.90557 0.93448 0.93593 0.93672 0.91949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.91 37.16 0.37 -0.82 16 2 C -0.12 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.12 -1.18 5.21 -26.73 -0.14 -1.32 16 4 C -0.12 -1.21 5.21 -26.73 -0.14 -1.35 16 5 C -0.14 -1.91 5.54 -26.73 -0.15 -2.06 16 6 C 0.14 2.26 6.30 -4.04 -0.03 2.23 16 7 N -0.38 -8.43 3.63 -56.17 -0.20 -8.63 16 8 N -0.14 -3.68 13.74 60.35 0.83 -2.85 16 9 N -0.23 -6.87 10.55 32.05 0.34 -6.53 16 10 C 0.15 4.28 6.72 -85.02 -0.57 3.71 16 11 C -0.45 -12.51 9.11 -37.78 -0.34 -12.85 16 12 H 0.08 2.03 7.31 -52.49 -0.38 1.65 16 13 C 0.07 1.98 5.49 -17.35 -0.10 1.88 16 14 N -0.78 -22.55 11.92 55.54 0.66 -21.89 16 15 Si 0.91 19.92 29.56 -169.99 -5.02 14.90 16 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 C -0.11 -2.61 6.37 -80.90 -0.52 -3.13 16 20 C -0.02 -0.34 5.99 -27.88 -0.17 -0.50 16 21 C -0.14 -2.36 9.90 37.16 0.37 -1.99 16 22 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 32 H 0.07 1.04 6.18 -51.93 -0.32 0.72 16 33 H 0.08 1.09 7.16 -51.93 -0.37 0.72 16 34 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.27 7.24 8.30 -40.82 -0.34 6.90 16 36 H 0.08 1.43 7.57 -51.93 -0.39 1.03 16 37 H 0.05 0.76 7.20 -51.93 -0.37 0.38 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.04 0.71 6.18 -51.93 -0.32 0.39 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 328.15 15.07 4.95 4.95 Total: -1.00 -32.06 328.15 -6.82 -38.88 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -6.79 Total: -1.41 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -1.57 Total: -17.41 kcal Atomic # 7 Polarization: -41.53 SS G_CDS: 1.63 Total: -39.90 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.06 -6.82 -38.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.156 kcal (2) G-P(sol) polarization free energy of solvation -32.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds