Wall clock time and date at job start Mon Mar 30 2020 06:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.47188 * 2 1 4 4 C 1.52999 * 109.47188 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.47192 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47188 * 179.97438 * 5 4 3 7 7 N 1.46506 * 109.46967 * 180.02562 * 6 5 4 8 8 N 1.40129 * 126.49037 * 90.02956 * 7 6 5 9 9 N 1.28668 * 108.93084 * 179.97438 * 8 7 6 10 10 C 1.34841 * 109.64111 * 0.02562 * 9 8 7 11 11 C 1.41486 * 126.02200 * 179.97438 * 10 9 8 12 12 H 1.08000 * 119.99984 * 179.97438 * 11 10 9 13 13 C 1.39740 * 120.00243 * 359.96914 * 11 10 9 14 14 N 1.30979 * 119.99709 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00103 * 180.02562 * 13 11 10 16 16 H 1.48508 * 109.47009 * 59.99890 * 15 13 11 17 17 H 1.48498 * 109.47092 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47359 * 300.00162 * 15 13 11 19 19 C 1.35012 * 126.49310 * 269.70990 * 7 6 5 20 20 C 1.50706 * 126.77348 * 0.02562 * 19 7 6 21 21 C 1.53005 * 109.47034 * 89.99738 * 20 19 7 22 22 H 1.09002 * 109.47109 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.47573 * 300.00193 * 1 2 3 24 24 H 1.09001 * 109.47288 * 60.00241 * 1 2 3 25 25 H 1.08998 * 109.46882 * 239.99522 * 2 1 3 26 26 H 1.09000 * 109.46604 * 120.00056 * 2 1 3 27 27 H 1.08999 * 109.47022 * 59.99469 * 3 2 1 28 28 H 1.09001 * 109.46809 * 300.00051 * 3 2 1 29 29 H 1.08994 * 109.47135 * 59.99973 * 4 3 2 30 30 H 1.08997 * 109.46852 * 299.99598 * 4 3 2 31 31 H 1.09011 * 109.47030 * 59.99947 * 5 4 3 32 32 H 1.09005 * 109.47630 * 300.00252 * 5 4 3 33 33 H 1.08994 * 109.46812 * 60.00569 * 6 5 4 34 34 H 1.08997 * 109.47178 * 300.00192 * 6 5 4 35 35 H 0.96998 * 119.99788 * 179.97438 * 14 13 11 36 36 H 1.09003 * 109.46932 * 209.99486 * 20 19 7 37 37 H 1.08999 * 109.47055 * 329.99913 * 20 19 7 38 38 H 1.09005 * 109.46871 * 180.02562 * 21 20 19 39 39 H 1.09003 * 109.47056 * 299.99672 * 21 20 19 40 40 H 1.08990 * 109.47278 * 60.00047 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0800 2.8849 0.0000 6 6 5.6100 2.8849 0.0013 7 7 6.0983 4.2662 0.0013 8 7 6.3756 5.0520 1.1279 9 7 6.7852 6.2084 0.7397 10 6 6.8018 6.2544 -0.6078 11 6 7.1933 7.3610 -1.3978 12 1 7.1691 7.2908 -2.4752 13 6 7.6110 8.5449 -0.7840 14 7 7.6406 8.6298 0.5227 15 14 8.1271 10.0061 -1.8270 16 1 6.9905 10.4282 -2.6845 17 1 8.5244 11.1303 -0.9418 18 1 9.2773 9.6211 -2.6838 19 6 6.3720 5.0211 -1.0841 20 6 6.2350 4.6093 -2.5273 21 6 4.8287 4.9512 -3.0239 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5138 -0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8932 -0.5139 0.8900 27 1 1.6766 1.9563 0.8899 28 1 1.6766 1.9563 -0.8900 29 1 3.9337 0.9285 -0.8891 30 1 3.9329 0.9288 0.8909 31 1 3.7162 3.3993 0.8896 32 1 3.7170 3.3983 -0.8904 33 1 5.9740 2.3705 -0.8880 34 1 5.9726 2.3717 0.8919 35 1 7.9309 9.4514 0.9488 36 1 6.9720 5.1417 -3.1286 37 1 6.4006 3.5356 -2.6161 38 1 4.7295 4.6529 -4.0676 39 1 4.0917 4.4188 -2.4226 40 1 4.6631 6.0248 -2.9351 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958544623.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:25:42 Heat of formation + Delta-G solvation = 26.966318 kcal Electronic energy + Delta-G solvation = -18374.623494 eV Core-core repulsion = 15610.064105 eV Total energy + Delta-G solvation = -2764.559389 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 251.169 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.87489 -37.67412 -35.78968 -35.24129 -34.25626 -32.43747 -30.42232 -29.05956 -26.91768 -25.29365 -24.36778 -22.56661 -22.06383 -21.83834 -20.39921 -18.98637 -17.00543 -16.89783 -16.61164 -15.98626 -15.60728 -15.18234 -14.87470 -14.71773 -14.50612 -13.91736 -13.72179 -13.49267 -13.27773 -13.06699 -12.88787 -12.80678 -12.55176 -12.37653 -12.25079 -12.01562 -11.91542 -11.83722 -11.67002 -11.54374 -11.48626 -11.32847 -11.10703 -10.72850 -10.20415 -9.33069 -8.27725 -6.16165 1.03215 1.44104 1.47300 1.56941 2.04199 2.35313 2.35678 3.55018 3.73859 3.77564 4.05620 4.10511 4.14762 4.24445 4.33097 4.35846 4.43858 4.56441 4.63038 4.72950 4.79642 4.87292 4.88747 4.95201 5.05504 5.08768 5.13459 5.14308 5.18326 5.25399 5.31255 5.36047 5.46600 5.50493 5.54248 5.58753 5.70481 6.41871 6.49062 6.92554 7.11762 8.31985 8.72037 Molecular weight = 251.17amu Principal moments of inertia in cm(-1) A = 0.036475 B = 0.004300 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.463226 B = 6509.437101 C = 6795.993400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.120 4.120 4 C -0.105 4.105 5 C -0.125 4.125 6 C 0.123 3.877 7 N -0.358 5.358 8 N -0.181 5.181 9 N -0.286 5.286 10 C 0.102 3.898 11 C -0.480 4.480 12 H 0.092 0.908 13 C 0.018 3.982 14 N -0.831 5.831 15 Si 0.986 3.014 16 H -0.258 1.258 17 H -0.281 1.281 18 H -0.257 1.257 19 C -0.077 4.077 20 C -0.021 4.021 21 C -0.136 4.136 22 H 0.061 0.939 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.069 0.931 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.083 0.917 30 H 0.070 0.930 31 H 0.042 0.958 32 H 0.065 0.935 33 H 0.112 0.888 34 H 0.092 0.908 35 H 0.271 0.729 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.050 0.950 40 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.623 -15.309 -7.416 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.159 4.159 3 C -0.158 4.158 4 C -0.143 4.143 5 C -0.164 4.164 6 C 0.002 3.998 7 N -0.152 5.152 8 N -0.156 5.156 9 N -0.155 5.155 10 C -0.031 4.031 11 C -0.517 4.517 12 H 0.110 0.890 13 C -0.195 4.195 14 N -0.460 5.460 15 Si 0.807 3.193 16 H -0.182 1.182 17 H -0.206 1.206 18 H -0.182 1.182 19 C -0.213 4.213 20 C -0.061 4.061 21 C -0.194 4.194 22 H 0.080 0.920 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.088 0.912 26 H 0.082 0.918 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.089 0.911 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.130 0.870 34 H 0.110 0.890 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.069 0.931 40 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -9.568 -15.179 -5.583 18.791 hybrid contribution 0.298 0.959 -0.726 1.239 sum -9.270 -14.221 -6.309 18.109 Atomic orbital electron populations 1.21796 0.95800 1.01967 1.01666 1.21512 0.95974 0.95956 1.02478 1.21600 0.94911 0.97550 1.01699 1.21473 0.95751 0.93645 1.03430 1.21948 0.93168 0.99308 1.01933 1.21969 0.95481 0.77364 1.04981 1.50005 1.47254 1.12845 1.05118 1.81354 1.25128 0.99711 1.09380 1.75017 1.16716 1.10035 1.13711 1.19615 1.00925 0.94271 0.88313 1.18874 1.43235 0.95749 0.93844 0.88968 1.26781 0.93986 1.02644 0.96116 1.70190 1.37030 1.27442 1.11329 0.85214 0.79510 0.76349 0.78214 1.18231 1.20596 1.18172 1.22317 1.13774 0.93460 0.91716 1.19804 0.98864 1.01095 0.86339 1.21721 0.95237 1.00937 1.01511 0.91987 0.93224 0.92775 0.91187 0.91824 0.93105 0.92118 0.89836 0.91101 0.93878 0.91658 0.86961 0.88999 0.91926 0.90528 0.89650 0.89545 0.93097 0.94596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 71.98 0.71 -1.37 16 2 C -0.12 -1.71 5.93 30.59 0.18 -1.53 16 3 C -0.12 -2.08 5.21 30.59 0.16 -1.92 16 4 C -0.10 -1.88 5.21 30.59 0.16 -1.72 16 5 C -0.12 -3.27 5.54 30.59 0.17 -3.10 16 6 C 0.12 3.69 6.30 86.38 0.54 4.24 16 7 N -0.36 -15.88 3.63 -331.63 -1.20 -17.09 16 8 N -0.18 -10.06 13.74 37.02 0.51 -9.55 16 9 N -0.29 -17.92 10.55 -52.52 -0.55 -18.47 16 10 C 0.10 5.90 6.72 39.67 0.27 6.17 16 11 C -0.48 -27.23 9.11 23.43 0.21 -27.02 16 12 H 0.09 4.74 7.31 -2.91 -0.02 4.71 16 13 C 0.02 0.99 5.49 85.18 0.47 1.46 16 14 N -0.83 -50.61 11.92 21.80 0.26 -50.35 16 15 Si 0.99 41.72 29.56 68.60 2.03 43.75 16 16 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 17 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 18 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 19 C -0.08 -3.56 6.37 42.26 0.27 -3.29 16 20 C -0.02 -0.72 5.99 29.85 0.18 -0.54 16 21 C -0.14 -4.01 9.90 71.98 0.71 -3.30 16 22 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 23 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.06 1.78 6.18 -2.38 -0.01 1.76 16 33 H 0.11 2.64 7.16 -2.39 -0.02 2.63 16 34 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.27 15.26 8.30 -92.71 -0.77 14.49 16 36 H 0.08 2.65 7.57 -2.39 -0.02 2.63 16 37 H 0.09 2.28 7.20 -2.39 -0.02 2.26 16 38 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 39 H 0.05 1.43 6.18 -2.39 -0.01 1.42 16 40 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -74.80 328.15 6.07 -68.73 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: 1.00 Total: 14.89 kcal Atomic # 6 Polarization: -35.95 SS G_CDS: 4.04 Total: -31.91 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -0.99 Total: -95.46 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -74.80 6.07 -68.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958544623.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.694 kcal (2) G-P(sol) polarization free energy of solvation -74.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds