Wall clock time and date at job start Mon Mar 30 2020 07:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 H 1.09001 * 109.47277 * 54.68293 * 3 2 1 5 5 C 1.50699 * 109.47165 * 294.68772 * 3 2 1 6 6 H 1.08004 * 119.99879 * 275.30919 * 5 3 2 7 7 C 1.37878 * 120.00421 * 95.30806 * 5 3 2 8 8 N 1.31514 * 119.99337 * 359.07995 * 7 5 3 9 9 Si 1.86796 * 120.00141 * 179.07769 * 7 5 3 10 10 H 1.48496 * 109.47135 * 90.00199 * 9 7 5 11 11 H 1.48502 * 109.47076 * 209.99837 * 9 7 5 12 12 H 1.48497 * 109.47153 * 329.99981 * 9 7 5 13 13 N 1.46902 * 109.47347 * 174.68818 * 3 2 1 14 14 C 1.46822 * 111.00204 * 58.64366 * 13 3 2 15 15 C 1.53043 * 109.60941 * 174.32171 * 14 13 3 16 16 C 1.53247 * 109.14264 * 59.27662 * 15 14 13 17 17 H 1.08999 * 109.62649 * 182.03206 * 16 15 14 18 18 C 1.53043 * 109.10797 * 61.97324 * 16 15 14 19 19 C 1.52995 * 109.56623 * 181.80588 * 18 16 15 20 20 C 1.53023 * 109.87615 * 59.36475 * 19 18 16 21 21 C 1.52989 * 109.36292 * 300.05017 * 20 19 18 22 22 C 1.52843 * 109.61348 * 59.94680 * 21 20 19 23 23 H 1.08999 * 109.40336 * 180.32892 * 22 21 20 24 24 C 1.46880 * 110.99696 * 294.33436 * 13 3 2 25 25 H 1.09002 * 109.47206 * 183.55974 * 1 2 3 26 26 H 1.08994 * 109.47276 * 303.55700 * 1 2 3 27 27 H 1.08998 * 109.47186 * 63.56309 * 1 2 3 28 28 H 1.09001 * 109.46819 * 119.99734 * 2 1 3 29 29 H 1.09000 * 109.47463 * 239.99768 * 2 1 3 30 30 H 0.97007 * 119.99647 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.44678 * 294.36859 * 14 13 3 32 32 H 1.08999 * 109.44291 * 54.30411 * 14 13 3 33 33 H 1.08998 * 109.52632 * 179.17823 * 15 14 13 34 34 H 1.08998 * 109.52803 * 299.37596 * 15 14 13 35 35 H 1.09004 * 109.45289 * 301.27645 * 18 16 15 36 36 H 1.08998 * 109.45036 * 61.20505 * 18 16 15 37 37 H 1.09001 * 109.02197 * 299.37998 * 19 18 16 38 38 H 1.09006 * 109.48067 * 179.63436 * 19 18 16 39 39 H 1.09005 * 109.48785 * 180.08562 * 20 19 18 40 40 H 1.08999 * 109.50628 * 60.03543 * 20 19 18 41 41 H 1.08996 * 109.44810 * 299.90066 * 21 20 19 42 42 H 1.09000 * 109.41612 * 179.97438 * 21 20 19 43 43 H 1.08996 * 109.47005 * 305.63571 * 24 13 3 44 44 H 1.08999 * 109.47349 * 65.64270 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9831 0.8385 5 6 1.6479 2.1139 -1.2909 6 1 2.2667 1.9995 -2.1687 7 6 0.4993 2.8742 -1.3515 8 7 -0.2637 2.9986 -0.2876 9 14 0.0270 3.7275 -2.9447 10 1 -0.8261 2.8229 -3.7566 11 1 -0.7236 4.9712 -2.6364 12 1 1.2551 4.0667 -3.7075 13 7 3.5034 1.4445 0.1282 14 6 4.1288 0.6963 -0.9693 15 6 5.6505 0.8368 -0.8851 16 6 6.1313 0.2944 0.4651 17 1 7.2104 0.4237 0.5483 18 6 5.7830 -1.1928 0.5604 19 6 6.2183 -1.7347 1.9233 20 6 5.5090 -0.9654 3.0398 21 6 5.8724 0.5176 2.9440 22 6 5.4329 1.0669 1.5870 23 1 5.6987 2.1219 1.5202 24 6 3.9179 0.9191 1.4357 25 1 -0.3634 -1.0257 0.0638 26 1 -0.3633 0.5680 0.8563 27 1 -0.3633 0.4575 -0.9202 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 -1.0716 3.5338 -0.3301 31 1 3.8567 -0.3564 -0.8922 32 1 3.7803 1.0922 -1.9232 33 1 6.1140 0.2689 -1.6918 34 1 5.9247 1.8880 -0.9740 35 1 4.7056 -1.3208 0.4552 36 1 6.2921 -1.7365 -0.2354 37 1 7.2966 -1.6129 2.0261 38 1 5.9637 -2.7924 1.9921 39 1 5.8247 -1.3553 4.0075 40 1 4.4305 -1.0831 2.9346 41 1 6.9508 0.6347 3.0508 42 1 5.3672 1.0666 3.7387 43 1 3.4173 1.4772 2.2268 44 1 3.6467 -0.1343 1.5065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036809957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:40 Heat of formation + Delta-G solvation = -26.662652 kcal Electronic energy + Delta-G solvation = -20371.030828 eV Core-core repulsion = 17707.686256 eV Total energy + Delta-G solvation = -2663.344572 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.95008 -36.45270 -33.59327 -32.10650 -31.25310 -30.12255 -28.25567 -26.47838 -23.80266 -23.34321 -22.20714 -21.85246 -20.69550 -19.19273 -17.28231 -16.17356 -15.31314 -15.27024 -14.49613 -14.36949 -14.03076 -13.69675 -13.27698 -13.11546 -12.92005 -12.47343 -12.19468 -12.05169 -11.76136 -11.63904 -11.16975 -11.15155 -10.86430 -10.76971 -10.76263 -10.63117 -10.33713 -10.24626 -10.12102 -9.91638 -9.72841 -9.54555 -9.40617 -9.16635 -8.73138 -8.39335 -6.90397 -5.97218 -3.98377 3.32718 3.40118 3.44027 4.45589 4.83640 4.92289 4.93471 5.11752 5.35678 5.39438 5.49333 5.60522 5.66107 5.71376 5.78176 5.84837 5.95297 6.03937 6.09766 6.14766 6.18297 6.24754 6.32217 6.35618 6.40092 6.44010 6.46421 6.49333 6.65157 6.67415 6.74585 6.78201 6.89772 6.90363 7.02611 7.28014 7.35877 7.65023 7.71210 7.89947 8.17261 8.52200 8.72730 9.08714 9.64239 11.11224 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031512 B = 0.006530 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.347352 B = 4287.028507 C = 4551.274626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.137 4.137 3 C 0.204 3.796 4 H 0.067 0.933 5 C -0.494 4.494 6 H 0.056 0.944 7 C 0.067 3.933 8 N -0.889 5.889 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.528 5.528 14 C 0.060 3.940 15 C -0.114 4.114 16 C -0.078 4.078 17 H 0.059 0.941 18 C -0.119 4.119 19 C -0.115 4.115 20 C -0.121 4.121 21 C -0.111 4.111 22 C -0.079 4.079 23 H 0.072 0.928 24 C 0.058 3.942 25 H 0.010 0.990 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.020 0.980 29 H 0.038 0.962 30 H 0.259 0.741 31 H 0.022 0.978 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.060 0.940 44 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.731 -7.102 4.039 13.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.177 4.177 3 C 0.098 3.902 4 H 0.085 0.915 5 C -0.533 4.533 6 H 0.074 0.926 7 C -0.135 4.135 8 N -0.528 5.528 9 Si 0.717 3.283 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.252 5.252 14 C -0.068 4.068 15 C -0.152 4.152 16 C -0.096 4.096 17 H 0.077 0.923 18 C -0.156 4.156 19 C -0.153 4.153 20 C -0.159 4.159 21 C -0.149 4.149 22 C -0.098 4.098 23 H 0.091 0.909 24 C -0.070 4.070 25 H 0.029 0.971 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.038 0.962 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.040 0.960 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.079 0.921 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 10.717 -6.505 4.068 13.180 hybrid contribution -0.643 -0.371 -0.801 1.092 sum 10.074 -6.876 3.268 12.627 Atomic orbital electron populations 1.21407 0.95793 0.96741 1.03521 1.22209 0.96953 1.01218 0.97337 1.19569 0.80717 0.90680 0.99213 0.91467 1.21008 1.06879 1.29852 0.95557 0.92564 1.24888 0.96643 0.95918 0.96087 1.69948 1.14330 1.40395 1.28083 0.86653 0.78482 0.79154 0.84021 1.20907 1.21331 1.19956 1.62404 1.11251 1.51989 0.99506 1.21964 0.92359 0.95472 0.97020 1.21699 0.96934 1.00917 0.95648 1.21133 0.98620 0.94371 0.95525 0.92262 1.21684 1.02011 0.95725 0.96225 1.21490 0.99773 0.98740 0.95278 1.21559 1.00997 0.95585 0.97712 1.21487 1.00337 0.95615 0.97501 1.21094 0.96000 0.99486 0.93220 0.90935 1.22104 0.93653 0.97565 0.93693 0.97100 0.92884 0.91781 0.96155 0.94359 0.93092 0.95968 0.90421 0.92851 0.91633 0.91366 0.92622 0.92642 0.92699 0.92715 0.91610 0.92511 0.92191 0.92124 0.95250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.68 8.74 37.16 0.32 -2.35 16 2 C -0.14 -3.10 4.65 -26.73 -0.12 -3.22 16 3 C 0.20 5.00 1.96 -68.87 -0.13 4.86 16 4 H 0.07 1.87 7.23 -51.93 -0.38 1.50 16 5 C -0.49 -13.20 7.54 -34.44 -0.26 -13.46 16 6 H 0.06 1.51 6.04 -52.48 -0.32 1.19 16 7 C 0.07 1.80 4.49 -17.82 -0.08 1.72 16 8 N -0.89 -24.83 11.59 55.43 0.64 -24.19 16 9 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 12 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 13 N -0.53 -11.32 4.63 -228.11 -1.06 -12.37 16 14 C 0.06 1.16 4.42 -3.84 -0.02 1.15 16 15 C -0.11 -1.82 5.59 -26.58 -0.15 -1.97 16 16 C -0.08 -1.12 2.54 -90.43 -0.23 -1.35 16 17 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 18 C -0.12 -1.61 4.67 -26.71 -0.12 -1.74 16 19 C -0.12 -1.36 5.90 -26.72 -0.16 -1.52 16 20 C -0.12 -1.48 5.67 -26.72 -0.15 -1.63 16 21 C -0.11 -1.43 5.44 -26.82 -0.15 -1.57 16 22 C -0.08 -1.21 2.56 -90.68 -0.23 -1.44 16 23 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 24 C 0.06 1.07 3.78 -3.85 -0.01 1.06 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.05 1.27 7.99 -51.93 -0.42 0.86 16 27 H 0.06 1.60 6.64 -51.93 -0.34 1.26 16 28 H 0.02 0.43 6.43 -51.93 -0.33 0.09 16 29 H 0.04 0.86 6.81 -51.93 -0.35 0.50 16 30 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 31 H 0.02 0.43 5.01 -51.93 -0.26 0.17 16 32 H 0.08 1.65 6.03 -51.93 -0.31 1.34 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 35 H 0.07 1.07 4.87 -51.93 -0.25 0.81 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.89 6.47 -51.93 -0.34 0.56 16 41 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 1.17 8.07 -51.93 -0.42 0.75 16 44 H 0.03 0.54 3.41 -51.93 -0.18 0.37 16 LS Contribution 307.90 15.07 4.64 4.64 Total: -1.00 -26.80 307.90 -9.97 -36.77 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -7.68 Total: 0.43 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: -1.50 Total: -21.48 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: -0.41 Total: -36.56 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -26.80 -9.97 -36.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036809957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.108 kcal (2) G-P(sol) polarization free energy of solvation -26.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds