Wall clock time and date at job start Mon Mar 30 2020 07:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47022 * 2 1 4 4 H 1.09001 * 109.47277 * 54.68293 * 3 2 1 5 5 C 1.50699 * 109.47165 * 294.68772 * 3 2 1 6 6 H 1.08004 * 119.99879 * 275.30919 * 5 3 2 7 7 C 1.37878 * 120.00421 * 95.30806 * 5 3 2 8 8 N 1.31514 * 119.99337 * 359.07995 * 7 5 3 9 9 Si 1.86796 * 120.00141 * 179.07769 * 7 5 3 10 10 H 1.48496 * 109.47135 * 90.00199 * 9 7 5 11 11 H 1.48502 * 109.47076 * 209.99837 * 9 7 5 12 12 H 1.48497 * 109.47153 * 329.99981 * 9 7 5 13 13 N 1.46902 * 109.47347 * 174.68818 * 3 2 1 14 14 C 1.46822 * 111.00204 * 58.64366 * 13 3 2 15 15 C 1.53043 * 109.60941 * 174.32171 * 14 13 3 16 16 C 1.53247 * 109.14264 * 59.27662 * 15 14 13 17 17 H 1.08999 * 109.62649 * 182.03206 * 16 15 14 18 18 C 1.53043 * 109.10797 * 61.97324 * 16 15 14 19 19 C 1.52995 * 109.56623 * 181.80588 * 18 16 15 20 20 C 1.53023 * 109.87615 * 59.36475 * 19 18 16 21 21 C 1.52989 * 109.36292 * 300.05017 * 20 19 18 22 22 C 1.52843 * 109.61348 * 59.94680 * 21 20 19 23 23 H 1.08999 * 109.40336 * 180.32892 * 22 21 20 24 24 C 1.46880 * 110.99696 * 294.33436 * 13 3 2 25 25 H 1.09002 * 109.47206 * 183.55974 * 1 2 3 26 26 H 1.08994 * 109.47276 * 303.55700 * 1 2 3 27 27 H 1.08998 * 109.47186 * 63.56309 * 1 2 3 28 28 H 1.09001 * 109.46819 * 119.99734 * 2 1 3 29 29 H 1.09000 * 109.47463 * 239.99768 * 2 1 3 30 30 H 0.97007 * 119.99647 * 179.97438 * 8 7 5 31 31 H 1.09002 * 109.44678 * 294.36859 * 14 13 3 32 32 H 1.08999 * 109.44291 * 54.30411 * 14 13 3 33 33 H 1.08998 * 109.52632 * 179.17823 * 15 14 13 34 34 H 1.08998 * 109.52803 * 299.37596 * 15 14 13 35 35 H 1.09004 * 109.45289 * 301.27645 * 18 16 15 36 36 H 1.08998 * 109.45036 * 61.20505 * 18 16 15 37 37 H 1.09001 * 109.02197 * 299.37998 * 19 18 16 38 38 H 1.09006 * 109.48067 * 179.63436 * 19 18 16 39 39 H 1.09005 * 109.48785 * 180.08562 * 20 19 18 40 40 H 1.08999 * 109.50628 * 60.03543 * 20 19 18 41 41 H 1.08996 * 109.44810 * 299.90066 * 21 20 19 42 42 H 1.09000 * 109.41612 * 179.97438 * 21 20 19 43 43 H 1.08996 * 109.47005 * 305.63571 * 24 13 3 44 44 H 1.08999 * 109.47349 * 65.64270 * 24 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6010 1.9831 0.8385 5 6 1.6479 2.1139 -1.2909 6 1 2.2667 1.9995 -2.1687 7 6 0.4993 2.8742 -1.3515 8 7 -0.2637 2.9986 -0.2876 9 14 0.0270 3.7275 -2.9447 10 1 -0.8261 2.8229 -3.7566 11 1 -0.7236 4.9712 -2.6364 12 1 1.2551 4.0667 -3.7075 13 7 3.5034 1.4445 0.1282 14 6 4.1288 0.6963 -0.9693 15 6 5.6505 0.8368 -0.8851 16 6 6.1313 0.2944 0.4651 17 1 7.2104 0.4237 0.5483 18 6 5.7830 -1.1928 0.5604 19 6 6.2183 -1.7347 1.9233 20 6 5.5090 -0.9654 3.0398 21 6 5.8724 0.5176 2.9440 22 6 5.4329 1.0669 1.5870 23 1 5.6987 2.1219 1.5202 24 6 3.9179 0.9191 1.4357 25 1 -0.3634 -1.0257 0.0638 26 1 -0.3633 0.5680 0.8563 27 1 -0.3633 0.4575 -0.9202 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 -1.0716 3.5338 -0.3301 31 1 3.8567 -0.3564 -0.8922 32 1 3.7803 1.0922 -1.9232 33 1 6.1140 0.2689 -1.6918 34 1 5.9247 1.8880 -0.9740 35 1 4.7056 -1.3208 0.4552 36 1 6.2921 -1.7365 -0.2354 37 1 7.2966 -1.6129 2.0261 38 1 5.9637 -2.7924 1.9921 39 1 5.8247 -1.3553 4.0075 40 1 4.4305 -1.0831 2.9346 41 1 6.9508 0.6347 3.0508 42 1 5.3672 1.0666 3.7387 43 1 3.4173 1.4772 2.2268 44 1 3.6467 -0.1343 1.5065 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036809957.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:40 Heat of formation + Delta-G solvation = -40.766322 kcal Electronic energy + Delta-G solvation = -20371.642409 eV Core-core repulsion = 17707.686256 eV Total energy + Delta-G solvation = -2663.956153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.26961 -38.03235 -35.17210 -33.70839 -32.82222 -31.60693 -29.51969 -28.37552 -25.53186 -24.71539 -23.84971 -23.02235 -21.98699 -20.89598 -18.56453 -18.19681 -16.95740 -16.43523 -16.13661 -15.71071 -15.62477 -15.26763 -14.71411 -14.50254 -14.42843 -13.99991 -13.73795 -13.30894 -13.28352 -12.94211 -12.83836 -12.71755 -12.64055 -12.31443 -12.24354 -12.10713 -12.01969 -11.77389 -11.53423 -11.46100 -11.28733 -10.93309 -10.77287 -10.66605 -10.58411 -10.44108 -8.60375 -8.05631 -6.12527 1.41009 1.43255 1.52326 2.45570 3.15852 3.55081 3.82143 3.83927 3.96455 4.21850 4.27993 4.43861 4.45763 4.51690 4.54114 4.59207 4.63313 4.70477 4.72587 4.79372 4.83677 4.84993 4.88398 5.05655 5.10968 5.11814 5.17953 5.25056 5.26119 5.29529 5.34484 5.38846 5.43875 5.49264 5.56716 5.60513 5.69682 5.71603 5.78534 5.82064 6.22285 6.73472 6.90961 6.99917 7.52919 9.01968 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.031512 B = 0.006530 C = 0.006151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.347352 B = 4287.028507 C = 4551.274626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.127 4.127 3 C 0.210 3.790 4 H 0.026 0.974 5 C -0.506 4.506 6 H 0.050 0.950 7 C 0.023 3.977 8 N -0.914 5.914 9 Si 0.946 3.054 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.546 5.546 14 C 0.065 3.935 15 C -0.109 4.109 16 C -0.073 4.073 17 H 0.084 0.916 18 C -0.117 4.117 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.107 4.107 22 C -0.076 4.076 23 H 0.059 0.941 24 C 0.063 3.937 25 H 0.040 0.960 26 H 0.033 0.967 27 H 0.038 0.962 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.258 0.742 31 H 0.023 0.977 32 H 0.051 0.949 33 H 0.076 0.924 34 H 0.056 0.944 35 H 0.042 0.958 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.040 0.960 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.807 -8.427 4.042 15.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.167 4.167 3 C 0.103 3.897 4 H 0.044 0.956 5 C -0.545 4.545 6 H 0.068 0.932 7 C -0.176 4.176 8 N -0.554 5.554 9 Si 0.772 3.228 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.269 5.269 14 C -0.063 4.063 15 C -0.147 4.147 16 C -0.092 4.092 17 H 0.102 0.898 18 C -0.154 4.154 19 C -0.149 4.149 20 C -0.158 4.158 21 C -0.145 4.145 22 C -0.094 4.094 23 H 0.078 0.922 24 C -0.065 4.065 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.070 0.930 33 H 0.094 0.906 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.097 0.903 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 12.808 -7.838 4.069 15.557 hybrid contribution -1.281 0.038 -0.778 1.500 sum 11.526 -7.800 3.291 14.301 Atomic orbital electron populations 1.21276 0.95950 0.97944 1.01289 1.22042 0.96655 1.00088 0.97866 1.19282 0.82725 0.91047 0.96599 0.95580 1.21257 1.06869 1.30140 0.96239 0.93171 1.25537 0.96684 0.96656 0.98765 1.70072 1.14603 1.41059 1.29660 0.85753 0.78110 0.78157 0.80757 1.20254 1.21193 1.19762 1.62261 1.09531 1.53531 1.01578 1.21919 0.94690 0.94802 0.94906 1.21668 0.94173 1.01008 0.97827 1.21134 0.99719 0.94699 0.93618 0.89781 1.21653 1.00514 0.95196 0.98049 1.21475 1.00691 0.99045 0.93642 1.21561 0.99886 0.95227 0.99155 1.21461 1.01560 0.95933 0.95502 1.21067 0.93442 0.99323 0.95615 0.92202 1.22096 0.96018 0.96955 0.91406 0.94096 0.94738 0.94258 0.94889 0.94205 0.93247 0.95900 0.93027 0.90580 0.92524 0.93964 0.91205 0.90804 0.91712 0.90692 0.93629 0.90320 0.92422 0.94146 0.95076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.95 8.74 71.98 0.63 -4.32 16 2 C -0.13 -5.80 4.65 30.59 0.14 -5.66 16 3 C 0.21 10.67 1.96 44.17 0.09 10.76 16 4 H 0.03 1.53 7.23 -2.39 -0.02 1.52 16 5 C -0.51 -27.83 7.54 25.60 0.19 -27.64 16 6 H 0.05 2.77 6.04 -2.91 -0.02 2.75 16 7 C 0.02 1.27 4.49 84.66 0.38 1.65 16 8 N -0.91 -52.67 11.59 21.45 0.25 -52.42 16 9 Si 0.95 44.24 29.54 68.60 2.03 46.26 16 10 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.54 16 12 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 13 N -0.55 -23.94 4.63 -875.61 -4.05 -27.99 16 14 C 0.06 2.51 4.42 86.33 0.38 2.89 16 15 C -0.11 -3.31 5.59 30.69 0.17 -3.14 16 16 C -0.07 -1.91 2.54 -10.67 -0.03 -1.94 16 17 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 18 C -0.12 -2.82 4.67 30.61 0.14 -2.68 16 19 C -0.11 -2.22 5.90 30.60 0.18 -2.04 16 20 C -0.12 -2.62 5.67 30.60 0.17 -2.45 16 21 C -0.11 -2.47 5.44 30.54 0.17 -2.30 16 22 C -0.08 -2.22 2.56 -10.83 -0.03 -2.24 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.89 16 24 C 0.06 2.35 3.78 86.30 0.33 2.68 16 25 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.03 1.69 7.99 -2.39 -0.02 1.67 16 27 H 0.04 1.99 6.64 -2.39 -0.02 1.97 16 28 H 0.03 1.40 6.43 -2.39 -0.02 1.39 16 29 H 0.04 1.79 6.81 -2.39 -0.02 1.77 16 30 H 0.26 14.29 8.31 -92.70 -0.77 13.52 16 31 H 0.02 0.88 5.01 -2.39 -0.01 0.87 16 32 H 0.05 2.24 6.03 -2.39 -0.01 2.23 16 33 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 34 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.04 1.24 4.87 -2.39 -0.01 1.23 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 39 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.04 1.17 6.47 -2.39 -0.02 1.15 16 41 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.04 1.63 8.07 -2.39 -0.02 1.61 16 44 H 0.03 1.15 3.41 -2.39 -0.01 1.14 16 Total: -1.00 -59.01 307.90 2.10 -56.92 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.95 Total: 13.66 kcal Atomic # 6 Polarization: -39.35 SS G_CDS: 2.92 Total: -36.43 kcal Atomic # 7 Polarization: -76.60 SS G_CDS: -3.80 Total: -80.41 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -59.01 2.10 -56.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036809957.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.151 kcal (2) G-P(sol) polarization free energy of solvation -59.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds