Wall clock time and date at job start Mon Mar 30 2020 07:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47028 * 2 1 4 4 H 1.09004 * 109.46971 * 312.36017 * 3 2 1 5 5 C 1.50700 * 109.47052 * 192.36080 * 3 2 1 6 6 H 1.08005 * 119.99869 * 238.25646 * 5 3 2 7 7 C 1.37874 * 120.00040 * 58.25638 * 5 3 2 8 8 N 1.31515 * 120.00042 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00011 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47074 * 270.00101 * 9 7 5 11 11 H 1.48500 * 109.47392 * 29.99476 * 9 7 5 12 12 H 1.48501 * 109.47438 * 149.99957 * 9 7 5 13 13 N 1.46901 * 109.47511 * 72.35861 * 3 2 1 14 14 C 1.47846 * 110.99965 * 8.57061 * 13 3 2 15 15 C 1.54898 * 104.79953 * 213.63739 * 14 13 3 16 16 C 1.55138 * 101.65331 * 37.06977 * 15 14 13 17 17 C 1.47441 * 111.00105 * 247.73151 * 13 3 2 18 18 H 1.09001 * 109.88659 * 242.82588 * 17 13 3 19 19 C 1.53002 * 109.88774 * 3.84770 * 17 13 3 20 20 C 1.54264 * 110.03407 * 283.70812 * 19 17 13 21 21 C 1.54890 * 104.19313 * 217.10531 * 20 19 17 22 22 C 1.54884 * 102.75017 * 37.94322 * 21 20 19 23 23 C 1.53874 * 110.02925 * 166.53982 * 19 17 13 24 24 H 1.08997 * 109.47338 * 69.52682 * 1 2 3 25 25 H 1.09003 * 109.46782 * 189.53088 * 1 2 3 26 26 H 1.09005 * 109.47020 * 309.52418 * 1 2 3 27 27 H 1.09000 * 109.47040 * 239.99452 * 2 1 3 28 28 H 1.09000 * 109.46842 * 119.99974 * 2 1 3 29 29 H 0.96996 * 119.99631 * 180.02562 * 8 7 5 30 30 H 1.08999 * 110.37218 * 332.46791 * 14 13 3 31 31 H 1.09000 * 110.37084 * 94.80593 * 14 13 3 32 32 H 1.08999 * 110.99088 * 278.97960 * 15 14 13 33 33 H 1.08997 * 111.02685 * 155.17754 * 15 14 13 34 34 H 1.09002 * 110.70823 * 205.96130 * 16 15 14 35 35 H 1.08997 * 110.85467 * 82.80205 * 16 15 14 36 36 H 1.09003 * 110.01498 * 45.15687 * 19 17 13 37 37 H 1.08993 * 110.48531 * 335.78370 * 20 19 17 38 38 H 1.09003 * 110.48434 * 98.42700 * 20 19 17 39 39 H 1.09003 * 110.75623 * 279.62740 * 21 20 19 40 40 H 1.09006 * 110.75324 * 156.26042 * 21 20 19 41 41 H 1.08999 * 110.48558 * 203.37230 * 22 21 20 42 42 H 1.09004 * 110.48558 * 80.73292 * 22 21 20 43 43 H 1.09001 * 110.03535 * 238.57050 * 23 19 17 44 44 H 1.08994 * 110.03891 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5083 2.0158 -0.7594 5 6 3.5160 1.4535 -0.3041 6 1 4.2090 1.8915 0.3990 7 6 3.9816 0.9044 -1.4800 8 7 3.1378 0.3705 -2.3359 9 14 5.8112 0.9173 -1.8566 10 1 6.1566 2.1611 -2.5909 11 1 6.5786 0.8632 -0.5864 12 1 6.1530 -0.2618 -2.6921 13 7 1.8076 2.0441 1.3198 14 6 1.3496 1.0286 2.2918 15 6 0.3763 1.7874 3.2279 16 6 -0.3318 2.7451 2.2338 17 6 0.7930 3.1112 1.2428 18 1 1.2383 4.0668 1.5199 19 6 0.2296 3.1922 -0.1774 20 6 1.2423 3.8899 -1.1087 21 6 0.3615 4.7336 -2.0635 22 6 -0.7629 5.2447 -1.1290 23 6 -1.0453 4.0536 -0.1902 24 1 -0.3634 0.3594 -0.9627 25 1 -0.3633 -1.0135 0.1702 26 1 -0.3633 0.6540 0.7927 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.4655 -0.0161 -3.1629 30 1 0.8295 0.2197 1.7788 31 1 2.1945 0.6380 2.8590 32 1 0.9219 2.3469 3.9877 33 1 -0.3376 1.1036 3.6870 34 1 -0.6965 3.6340 2.7485 35 1 -1.1478 2.2370 1.7200 36 1 0.0078 2.1916 -0.5484 37 1 1.9077 4.5343 -0.5343 38 1 1.8153 3.1521 -1.6703 39 1 -0.0500 4.1127 -2.8592 40 1 0.9291 5.5674 -2.4769 41 1 -1.6533 5.4957 -1.7055 42 1 -0.4213 6.1080 -0.5578 43 1 -1.8857 3.4714 -0.5683 44 1 -1.2625 4.4144 0.8151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045073633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:11 Heat of formation + Delta-G solvation = 34.985560 kcal Electronic energy + Delta-G solvation = -20861.394870 eV Core-core repulsion = 18200.723565 eV Total energy + Delta-G solvation = -2660.671305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.12283 -36.63207 -34.09142 -31.62443 -30.54312 -29.51902 -27.99464 -26.33003 -25.57702 -22.82661 -21.47889 -20.86476 -19.87857 -19.38000 -17.74934 -16.43190 -15.92254 -15.17875 -14.73202 -14.41531 -14.20162 -13.38696 -12.99297 -12.74679 -12.67709 -12.20503 -12.07865 -11.73417 -11.31969 -11.25668 -11.12628 -10.89197 -10.72076 -10.58829 -10.55547 -10.42748 -10.26904 -10.19500 -9.97952 -9.73485 -9.63641 -9.52707 -9.46169 -9.21239 -8.74588 -8.08837 -6.89986 -5.88263 -3.90052 3.36340 3.43075 3.47972 4.50232 4.92620 5.09948 5.17481 5.28491 5.32061 5.39901 5.46229 5.61748 5.86078 5.96270 6.00930 6.03850 6.09043 6.10062 6.11331 6.20648 6.24432 6.28254 6.30150 6.35110 6.39913 6.45199 6.50480 6.65015 6.65889 6.72397 6.77103 6.86064 6.93580 7.05577 7.15322 7.21969 7.30203 7.61715 7.84391 8.02226 8.38678 8.52517 8.74665 9.17245 9.72982 11.15597 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.009748 C = 0.007654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.709986 B = 2871.624937 C = 3657.313827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.150 4.150 3 C 0.165 3.835 4 H 0.083 0.917 5 C -0.479 4.479 6 H 0.058 0.942 7 C 0.053 3.947 8 N -0.899 5.899 9 Si 0.889 3.111 10 H -0.283 1.283 11 H -0.276 1.276 12 H -0.290 1.290 13 N -0.515 5.515 14 C 0.016 3.984 15 C -0.133 4.133 16 C -0.137 4.137 17 C 0.085 3.915 18 H 0.067 0.933 19 C -0.114 4.114 20 C -0.118 4.118 21 C -0.128 4.128 22 C -0.122 4.122 23 C -0.121 4.121 24 H 0.045 0.955 25 H 0.032 0.968 26 H 0.050 0.950 27 H 0.103 0.897 28 H 0.039 0.961 29 H 0.257 0.743 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.064 0.936 36 H 0.093 0.907 37 H 0.062 0.938 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.053 0.947 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 4.858 4.458 10.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.189 4.189 3 C 0.060 3.940 4 H 0.100 0.900 5 C -0.518 4.518 6 H 0.077 0.923 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.718 3.282 10 H -0.210 1.210 11 H -0.201 1.201 12 H -0.216 1.216 13 N -0.238 5.238 14 C -0.112 4.112 15 C -0.171 4.171 16 C -0.175 4.175 17 C -0.024 4.024 18 H 0.085 0.915 19 C -0.133 4.133 20 C -0.155 4.155 21 C -0.166 4.166 22 C -0.160 4.160 23 C -0.159 4.159 24 H 0.064 0.936 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.121 0.879 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.081 0.919 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.984 4.973 4.448 10.405 hybrid contribution 0.282 -0.426 -0.465 0.690 sum -7.703 4.547 3.984 9.792 Atomic orbital electron populations 1.22222 0.99792 0.99426 1.00360 1.22202 0.91393 1.02343 1.02958 1.20470 0.96908 0.90462 0.86183 0.90016 1.21256 0.92390 1.35478 1.02674 0.92343 1.24894 0.97239 0.95993 0.96490 1.69845 1.33418 1.40533 1.10174 0.86634 0.86240 0.77234 0.78095 1.20951 1.20130 1.21607 1.63929 1.38978 1.09907 1.11025 1.23667 0.97075 0.96580 0.93871 1.22726 0.98281 0.98227 0.97894 1.22916 0.98395 0.98837 0.97345 1.22536 0.90230 0.97030 0.92641 0.91455 1.22498 0.94110 1.00304 0.96343 1.22699 0.96903 0.99017 0.96898 1.22548 0.96881 0.99178 0.97952 1.22342 0.98226 0.97836 0.97590 1.22282 0.97973 0.96532 0.99153 0.93563 0.94846 0.93130 0.87907 0.94218 0.93284 0.90164 0.92093 0.91841 0.92281 0.92235 0.91785 0.88878 0.91897 0.88320 0.92036 0.92437 0.92787 0.92254 0.92784 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 7.55 37.16 0.28 -2.85 16 2 C -0.15 -3.47 4.75 -26.73 -0.13 -3.59 16 3 C 0.17 3.90 1.29 -68.87 -0.09 3.81 16 4 H 0.08 1.96 1.91 -51.93 -0.10 1.86 16 5 C -0.48 -12.92 8.65 -34.44 -0.30 -13.22 16 6 H 0.06 1.65 7.81 -52.48 -0.41 1.24 16 7 C 0.05 1.43 5.25 -17.82 -0.09 1.34 16 8 N -0.90 -24.76 11.17 55.43 0.62 -24.14 16 9 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 N -0.51 -10.90 5.00 -216.82 -1.08 -11.98 16 14 C 0.02 0.30 4.96 -2.30 -0.01 0.28 16 15 C -0.13 -2.06 7.05 -24.60 -0.17 -2.24 16 16 C -0.14 -2.09 4.44 -24.91 -0.11 -2.20 16 17 C 0.08 1.53 2.71 -66.72 -0.18 1.35 16 18 H 0.07 1.26 7.82 -51.93 -0.41 0.85 16 19 C -0.11 -2.02 1.73 -89.50 -0.16 -2.17 16 20 C -0.12 -2.24 5.33 -25.07 -0.13 -2.37 16 21 C -0.13 -2.02 6.91 -24.74 -0.17 -2.20 16 22 C -0.12 -1.69 6.83 -25.07 -0.17 -1.87 16 23 C -0.12 -1.78 5.72 -25.61 -0.15 -1.93 16 24 H 0.05 0.91 7.31 -51.93 -0.38 0.53 16 25 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 26 H 0.05 0.92 3.54 -51.93 -0.18 0.73 16 27 H 0.10 2.70 5.68 -51.93 -0.30 2.41 16 28 H 0.04 0.91 6.08 -51.93 -0.32 0.60 16 29 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 30 H 0.08 1.54 2.95 -51.93 -0.15 1.39 16 31 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 34 H 0.06 0.81 7.87 -51.93 -0.41 0.40 16 35 H 0.06 0.97 6.46 -51.93 -0.34 0.63 16 36 H 0.09 1.84 3.46 -51.93 -0.18 1.66 16 37 H 0.06 1.22 7.64 -51.93 -0.40 0.82 16 38 H 0.10 2.26 6.17 -51.93 -0.32 1.94 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.83 6.43 -51.93 -0.33 0.50 16 LS Contribution 302.93 15.07 4.57 4.57 Total: -1.00 -26.74 302.93 -9.66 -36.39 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -7.16 Total: 6.58 kcal Atomic # 6 Polarization: -26.27 SS G_CDS: -1.58 Total: -27.85 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.46 Total: -36.13 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -26.74 -9.66 -36.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045073633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.379 kcal (2) G-P(sol) polarization free energy of solvation -26.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds