Wall clock time and date at job start Mon Mar 30 2020 07:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.47028 * 2 1 4 4 H 1.09004 * 109.46971 * 312.36017 * 3 2 1 5 5 C 1.50700 * 109.47052 * 192.36080 * 3 2 1 6 6 H 1.08005 * 119.99869 * 238.25646 * 5 3 2 7 7 C 1.37874 * 120.00040 * 58.25638 * 5 3 2 8 8 N 1.31515 * 120.00042 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00011 * 180.02562 * 7 5 3 10 10 H 1.48508 * 109.47074 * 270.00101 * 9 7 5 11 11 H 1.48500 * 109.47392 * 29.99476 * 9 7 5 12 12 H 1.48501 * 109.47438 * 149.99957 * 9 7 5 13 13 N 1.46901 * 109.47511 * 72.35861 * 3 2 1 14 14 C 1.47846 * 110.99965 * 8.57061 * 13 3 2 15 15 C 1.54898 * 104.79953 * 213.63739 * 14 13 3 16 16 C 1.55138 * 101.65331 * 37.06977 * 15 14 13 17 17 C 1.47441 * 111.00105 * 247.73151 * 13 3 2 18 18 H 1.09001 * 109.88659 * 242.82588 * 17 13 3 19 19 C 1.53002 * 109.88774 * 3.84770 * 17 13 3 20 20 C 1.54264 * 110.03407 * 283.70812 * 19 17 13 21 21 C 1.54890 * 104.19313 * 217.10531 * 20 19 17 22 22 C 1.54884 * 102.75017 * 37.94322 * 21 20 19 23 23 C 1.53874 * 110.02925 * 166.53982 * 19 17 13 24 24 H 1.08997 * 109.47338 * 69.52682 * 1 2 3 25 25 H 1.09003 * 109.46782 * 189.53088 * 1 2 3 26 26 H 1.09005 * 109.47020 * 309.52418 * 1 2 3 27 27 H 1.09000 * 109.47040 * 239.99452 * 2 1 3 28 28 H 1.09000 * 109.46842 * 119.99974 * 2 1 3 29 29 H 0.96996 * 119.99631 * 180.02562 * 8 7 5 30 30 H 1.08999 * 110.37218 * 332.46791 * 14 13 3 31 31 H 1.09000 * 110.37084 * 94.80593 * 14 13 3 32 32 H 1.08999 * 110.99088 * 278.97960 * 15 14 13 33 33 H 1.08997 * 111.02685 * 155.17754 * 15 14 13 34 34 H 1.09002 * 110.70823 * 205.96130 * 16 15 14 35 35 H 1.08997 * 110.85467 * 82.80205 * 16 15 14 36 36 H 1.09003 * 110.01498 * 45.15687 * 19 17 13 37 37 H 1.08993 * 110.48531 * 335.78370 * 20 19 17 38 38 H 1.09003 * 110.48434 * 98.42700 * 20 19 17 39 39 H 1.09003 * 110.75623 * 279.62740 * 21 20 19 40 40 H 1.09006 * 110.75324 * 156.26042 * 21 20 19 41 41 H 1.08999 * 110.48558 * 203.37230 * 22 21 20 42 42 H 1.09004 * 110.48558 * 80.73292 * 22 21 20 43 43 H 1.09001 * 110.03535 * 238.57050 * 23 19 17 44 44 H 1.08994 * 110.03891 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5083 2.0158 -0.7594 5 6 3.5160 1.4535 -0.3041 6 1 4.2090 1.8915 0.3990 7 6 3.9816 0.9044 -1.4800 8 7 3.1378 0.3705 -2.3359 9 14 5.8112 0.9173 -1.8566 10 1 6.1566 2.1611 -2.5909 11 1 6.5786 0.8632 -0.5864 12 1 6.1530 -0.2618 -2.6921 13 7 1.8076 2.0441 1.3198 14 6 1.3496 1.0286 2.2918 15 6 0.3763 1.7874 3.2279 16 6 -0.3318 2.7451 2.2338 17 6 0.7930 3.1112 1.2428 18 1 1.2383 4.0668 1.5199 19 6 0.2296 3.1922 -0.1774 20 6 1.2423 3.8899 -1.1087 21 6 0.3615 4.7336 -2.0635 22 6 -0.7629 5.2447 -1.1290 23 6 -1.0453 4.0536 -0.1902 24 1 -0.3634 0.3594 -0.9627 25 1 -0.3633 -1.0135 0.1702 26 1 -0.3633 0.6540 0.7927 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.4655 -0.0161 -3.1629 30 1 0.8295 0.2197 1.7788 31 1 2.1945 0.6380 2.8590 32 1 0.9219 2.3469 3.9877 33 1 -0.3376 1.1036 3.6870 34 1 -0.6965 3.6340 2.7485 35 1 -1.1478 2.2370 1.7200 36 1 0.0078 2.1916 -0.5484 37 1 1.9077 4.5343 -0.5343 38 1 1.8153 3.1521 -1.6703 39 1 -0.0500 4.1127 -2.8592 40 1 0.9291 5.5674 -2.4769 41 1 -1.6533 5.4957 -1.7055 42 1 -0.4213 6.1080 -0.5578 43 1 -1.8857 3.4714 -0.5683 44 1 -1.2625 4.4144 0.8151 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045073633.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:11 Heat of formation + Delta-G solvation = 20.434369 kcal Electronic energy + Delta-G solvation = -20862.025857 eV Core-core repulsion = 18200.723565 eV Total energy + Delta-G solvation = -2661.302292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.62399 -38.00543 -35.82290 -33.53350 -31.97971 -31.00181 -29.32387 -28.21152 -26.92622 -24.68738 -23.02118 -22.19037 -21.29986 -20.75913 -19.44185 -18.14385 -17.54463 -16.81455 -16.35887 -15.92157 -15.71752 -14.94572 -14.51257 -14.27408 -14.04817 -13.74406 -13.50366 -13.23439 -13.03646 -12.92569 -12.85986 -12.57956 -12.35612 -12.09900 -11.95535 -11.87396 -11.72439 -11.51068 -11.41513 -11.35314 -11.20299 -11.10035 -11.03282 -10.90744 -10.64942 -10.02773 -8.56473 -7.95693 -6.04424 1.39144 1.41164 1.50337 2.47498 3.27018 3.52991 3.80262 3.89031 3.99425 4.01830 4.14111 4.32353 4.47509 4.54911 4.55761 4.68276 4.69129 4.76553 4.77402 4.84806 4.92900 4.95242 4.96446 5.02718 5.12285 5.13531 5.18840 5.21693 5.25347 5.32047 5.34245 5.38899 5.49700 5.55525 5.56482 5.58799 5.72195 5.76280 5.94393 6.01578 6.52225 6.79494 6.90267 7.09756 7.62142 9.04059 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018678 B = 0.009748 C = 0.007654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.709986 B = 2871.624937 C = 3657.313827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.145 4.145 3 C 0.169 3.831 4 H 0.082 0.918 5 C -0.496 4.496 6 H 0.035 0.965 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.939 3.061 10 H -0.280 1.280 11 H -0.279 1.279 12 H -0.285 1.285 13 N -0.539 5.539 14 C 0.009 3.991 15 C -0.123 4.123 16 C -0.127 4.127 17 C 0.081 3.919 18 H 0.060 0.940 19 C -0.110 4.110 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.114 4.114 23 C -0.115 4.115 24 H 0.038 0.962 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.032 0.968 29 H 0.256 0.744 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.065 0.935 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.674 5.963 5.525 13.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.184 4.184 3 C 0.063 3.937 4 H 0.099 0.901 5 C -0.535 4.535 6 H 0.054 0.946 7 C -0.183 4.183 8 N -0.557 5.557 9 Si 0.767 3.233 10 H -0.206 1.206 11 H -0.204 1.204 12 H -0.211 1.211 13 N -0.263 5.263 14 C -0.118 4.118 15 C -0.161 4.161 16 C -0.165 4.165 17 C -0.028 4.028 18 H 0.078 0.922 19 C -0.129 4.129 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.152 4.152 23 C -0.153 4.153 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.095 0.905 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.104 0.896 34 H 0.105 0.895 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.084 0.916 41 H 0.095 0.905 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.172 6.082 5.523 13.076 hybrid contribution 1.046 -0.764 -0.786 1.515 sum -9.126 5.318 4.737 11.576 Atomic orbital electron populations 1.22055 0.96741 1.00957 1.00614 1.22046 0.94131 1.01498 1.00761 1.20295 0.94799 0.90919 0.87684 0.90121 1.21521 0.94273 1.35319 1.02403 0.94640 1.25449 1.00415 0.95949 0.96493 1.69959 1.34528 1.40943 1.10234 0.85848 0.82493 0.77312 0.77661 1.20574 1.20378 1.21103 1.63713 1.41465 1.11038 1.10043 1.23674 0.97428 0.96609 0.94090 1.22688 0.97806 0.98302 0.97279 1.22872 0.97215 0.99966 0.96443 1.22570 0.90706 0.95585 0.93897 0.92212 1.22382 0.95285 0.99744 0.95490 1.22537 0.97285 0.98212 0.97429 1.22523 0.97271 0.98850 0.97665 1.22317 0.98057 0.97702 0.97090 1.22248 0.96178 0.96284 1.00587 0.94266 0.93034 0.91381 0.91428 0.94926 0.93456 0.90454 0.93733 0.91330 0.89617 0.89461 0.90977 0.90981 0.93157 0.93209 0.92511 0.91609 0.90463 0.91177 0.91743 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.60 7.55 71.98 0.54 -5.06 16 2 C -0.15 -6.88 4.75 30.60 0.15 -6.73 16 3 C 0.17 8.26 1.29 44.17 0.06 8.31 16 4 H 0.08 4.01 1.91 -2.38 0.00 4.01 16 5 C -0.50 -27.98 8.65 25.60 0.22 -27.76 16 6 H 0.04 2.10 7.81 -2.91 -0.02 2.08 16 7 C 0.01 0.80 5.25 84.65 0.44 1.24 16 8 N -0.92 -52.29 11.17 21.45 0.24 -52.05 16 9 Si 0.94 45.34 29.54 68.60 2.03 47.37 16 10 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 11 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 N -0.54 -23.02 5.00 -839.90 -4.20 -27.22 16 14 C 0.01 0.35 4.96 86.77 0.43 0.78 16 15 C -0.12 -3.43 7.05 31.98 0.23 -3.20 16 16 C -0.13 -3.42 4.44 31.77 0.14 -3.28 16 17 C 0.08 2.83 2.71 45.26 0.12 2.95 16 18 H 0.06 2.17 7.82 -2.39 -0.02 2.15 16 19 C -0.11 -3.80 1.73 -10.07 -0.02 -3.82 16 20 C -0.12 -4.54 5.33 31.67 0.17 -4.37 16 21 C -0.13 -3.85 6.91 31.88 0.22 -3.63 16 22 C -0.11 -2.79 6.83 31.67 0.22 -2.58 16 23 C -0.12 -2.99 5.72 31.32 0.18 -2.82 16 24 H 0.04 1.53 7.31 -2.39 -0.02 1.52 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.07 2.34 3.54 -2.38 -0.01 2.33 16 27 H 0.07 3.69 5.68 -2.39 -0.01 3.68 16 28 H 0.03 1.54 6.08 -2.39 -0.01 1.52 16 29 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.08 2.91 2.95 -2.39 -0.01 2.90 16 31 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.09 1.93 7.87 -2.39 -0.02 1.91 16 35 H 0.07 1.86 6.46 -2.39 -0.02 1.85 16 36 H 0.07 2.82 3.46 -2.39 -0.01 2.81 16 37 H 0.05 2.01 7.64 -2.39 -0.02 1.99 16 38 H 0.05 2.41 6.17 -2.39 -0.01 2.40 16 39 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 40 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.08 1.80 6.43 -2.39 -0.02 1.79 16 Total: -1.00 -60.20 302.93 2.14 -58.06 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.98 Total: 23.80 kcal Atomic # 6 Polarization: -53.05 SS G_CDS: 3.10 Total: -49.96 kcal Atomic # 7 Polarization: -75.31 SS G_CDS: -3.96 Total: -79.27 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -60.20 2.14 -58.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045073633.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.491 kcal (2) G-P(sol) polarization free energy of solvation -60.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds