Wall clock time and date at job start Mon Mar 30 2020 06:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47433 * 2 1 4 4 H 1.09000 * 109.46825 * 55.00004 * 3 2 1 5 5 C 1.53005 * 109.46912 * 295.00028 * 3 2 1 6 6 C 1.52998 * 109.46708 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47132 * 60.00587 * 6 5 3 8 8 C 1.53005 * 109.46845 * 299.99329 * 7 6 5 9 9 H 1.09004 * 109.47032 * 300.00043 * 8 7 6 10 10 N 1.46899 * 109.47020 * 180.02562 * 8 7 6 11 11 C 1.46893 * 111.00133 * 303.69282 * 10 8 7 12 12 C 1.50704 * 109.47340 * 281.81336 * 11 10 8 13 13 H 1.08004 * 119.99308 * 354.69983 * 12 11 10 14 14 C 1.37867 * 120.00192 * 174.69218 * 12 11 10 15 15 N 1.31522 * 120.00257 * 0.02562 * 14 12 11 16 16 Si 1.86801 * 120.00033 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47131 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47275 * 120.00253 * 16 14 12 19 19 H 1.48497 * 109.47569 * 240.00253 * 16 14 12 20 20 C 1.46906 * 111.00119 * 67.64940 * 10 8 7 21 21 C 1.53001 * 117.49667 * 247.07126 * 20 10 8 22 22 C 1.52999 * 117.50053 * 178.40975 * 20 10 8 23 23 C 1.52997 * 109.47222 * 60.00289 * 8 7 6 24 24 H 1.09005 * 109.46721 * 60.00162 * 1 2 3 25 25 H 1.09000 * 109.47263 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.47110 * 300.00042 * 1 2 3 27 27 H 1.09006 * 109.47072 * 239.99636 * 2 1 3 28 28 H 1.09000 * 109.47092 * 120.00139 * 2 1 3 29 29 H 1.09000 * 109.47356 * 299.99650 * 5 3 2 30 30 H 1.09001 * 109.47128 * 59.99876 * 5 3 2 31 31 H 1.09011 * 109.46750 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.47097 * 299.99533 * 6 5 3 33 33 H 1.09000 * 109.47991 * 59.99493 * 7 6 5 34 34 H 1.09000 * 109.47153 * 179.97438 * 7 6 5 35 35 H 1.09002 * 109.47342 * 41.81860 * 11 10 8 36 36 H 1.09008 * 109.47267 * 161.81722 * 11 10 8 37 37 H 0.96996 * 120.00129 * 179.97438 * 15 14 12 38 38 H 1.09001 * 115.55143 * 32.73772 * 20 10 8 39 39 H 1.09002 * 117.49992 * 359.97438 * 21 20 10 40 40 H 1.08991 * 117.49970 * 145.02027 * 21 20 10 41 41 H 1.08994 * 117.49673 * 214.98033 * 22 20 10 42 42 H 1.09006 * 117.49614 * 359.97438 * 22 20 10 43 43 H 1.08998 * 109.47576 * 179.97438 * 23 8 7 44 44 H 1.09000 * 109.46841 * 59.99825 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1448 3.5691 -1.3071 7 6 3.6696 3.5714 -1.1812 8 6 4.0744 2.8874 0.1262 9 1 3.6394 3.4263 0.9680 10 7 5.5383 2.8901 0.2474 11 6 6.1641 2.2482 -0.9162 12 6 6.0637 0.7508 -0.7784 13 1 5.6607 0.3176 0.1252 14 6 6.4860 -0.0659 -1.8057 15 7 6.9771 0.4616 -2.9058 16 14 6.3609 -1.9219 -1.6351 17 1 5.7777 -2.2591 -0.3117 18 1 5.4902 -2.4603 -2.7109 19 1 7.7146 -2.5218 -1.7473 20 6 6.0487 4.2550 0.4335 21 6 6.8903 4.8545 -0.6949 22 6 7.5583 4.4263 0.6142 23 6 3.5649 1.4447 0.1260 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0699 1.5875 -2.1492 30 1 0.5490 2.1252 -1.3970 31 1 1.8569 4.0564 -2.2387 32 1 1.7098 4.1079 -0.4653 33 1 4.1046 3.0326 -2.0229 34 1 4.0327 4.5992 -1.1814 35 1 5.6520 2.5646 -1.8249 36 1 7.2134 2.5384 -0.9708 37 1 7.2746 -0.1130 -3.6284 38 1 5.3958 4.9297 0.9872 39 1 7.0657 4.2359 -1.5751 40 1 6.7915 5.9234 -0.8832 41 1 7.8985 5.2138 1.2866 42 1 8.1727 3.5262 0.5955 43 1 3.8536 0.9573 1.0572 44 1 3.9998 0.9060 -0.7158 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071147911.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:14 Heat of formation + Delta-G solvation = -4.988106 kcal Electronic energy + Delta-G solvation = -20150.269209 eV Core-core repulsion = 17487.864515 eV Total energy + Delta-G solvation = -2662.404694 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.81386 -38.53826 -35.52084 -34.70740 -33.25231 -30.49459 -29.66711 -28.27520 -25.05856 -24.39035 -23.26902 -22.77853 -21.76950 -20.55562 -19.96936 -18.51772 -17.17573 -16.64628 -16.23020 -15.74435 -15.55692 -15.22436 -14.88891 -14.34993 -14.30052 -14.20790 -13.57524 -13.29883 -13.04539 -12.99327 -12.77155 -12.60454 -12.41030 -12.38748 -12.26517 -12.18417 -11.89573 -11.77050 -11.55693 -11.45658 -11.27801 -11.13167 -10.90422 -10.71313 -10.66529 -10.45216 -8.66993 -8.12593 -6.14907 1.36726 1.38974 1.50789 2.41217 2.95778 3.18229 3.38593 3.85176 3.96919 4.08811 4.09613 4.14182 4.24061 4.32053 4.39710 4.43846 4.57039 4.65703 4.77327 4.80301 4.81485 4.84190 4.86912 4.90287 5.00407 5.12940 5.13784 5.18525 5.23484 5.26379 5.34889 5.36027 5.39205 5.44962 5.49164 5.54644 5.60810 5.68884 5.77753 5.96998 6.19529 6.51782 6.78228 6.96874 7.47683 8.96785 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.013010 B = 0.011050 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.725898 B = 2533.364603 C = 4105.685807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.078 4.078 4 H 0.078 0.922 5 C -0.110 4.110 6 C -0.105 4.105 7 C -0.142 4.142 8 C 0.104 3.896 9 H 0.080 0.920 10 N -0.517 5.517 11 C 0.202 3.798 12 C -0.494 4.494 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.935 5.935 16 Si 0.948 3.052 17 H -0.263 1.263 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.023 3.977 21 C -0.223 4.223 22 C -0.171 4.171 23 C -0.110 4.110 24 H 0.059 0.941 25 H 0.055 0.945 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.055 0.945 29 H 0.035 0.965 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.056 0.944 35 H -0.011 1.011 36 H -0.001 1.001 37 H 0.259 0.741 38 H 0.133 0.867 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.122 0.878 42 H 0.066 0.934 43 H 0.042 0.958 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.231 5.981 5.906 14.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.097 4.097 4 H 0.096 0.904 5 C -0.147 4.147 6 C -0.143 4.143 7 C -0.181 4.181 8 C -0.004 4.004 9 H 0.098 0.902 10 N -0.238 5.238 11 C 0.077 3.923 12 C -0.533 4.533 13 H 0.082 0.918 14 C -0.195 4.195 15 N -0.577 5.577 16 Si 0.774 3.226 17 H -0.187 1.187 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.087 4.087 21 C -0.262 4.262 22 C -0.209 4.209 23 C -0.148 4.148 24 H 0.078 0.922 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.053 0.947 34 H 0.075 0.925 35 H 0.007 0.993 36 H 0.017 0.983 37 H 0.068 0.932 38 H 0.150 0.850 39 H 0.085 0.915 40 H 0.128 0.872 41 H 0.140 0.860 42 H 0.085 0.915 43 H 0.061 0.939 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.038 5.626 6.186 13.847 hybrid contribution 0.623 -0.734 -1.254 1.581 sum -10.415 4.892 4.931 12.519 Atomic orbital electron populations 1.21764 0.94153 1.01829 1.02367 1.21541 0.97057 0.96288 1.00987 1.21143 0.94536 0.95924 0.98061 0.90373 1.21592 1.00812 0.95457 0.96867 1.21428 0.93858 0.96915 1.02107 1.22121 0.97407 0.99553 0.99044 1.21552 0.86490 0.96487 0.95865 0.90226 1.62095 1.05747 1.14217 1.41692 1.19551 0.92603 0.93375 0.86808 1.21557 1.38629 0.91990 1.01104 0.91798 1.25699 0.95762 1.02799 0.95227 1.70085 1.44433 1.36368 1.06822 0.85633 0.77621 0.80940 0.78379 1.18690 1.20768 1.20948 1.22771 0.93616 0.91130 1.01135 1.23464 1.08111 1.01310 0.93292 1.23034 0.95588 1.02506 0.99737 1.21900 0.94616 0.96155 1.02081 0.92156 0.92555 0.91783 0.94007 0.92617 0.94627 0.90001 0.91894 0.90379 0.94689 0.92515 0.99324 0.98263 0.93208 0.84958 0.91525 0.87204 0.86029 0.91494 0.93890 0.91295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.06 9.67 71.98 0.70 -2.37 16 2 C -0.12 -3.42 5.40 30.59 0.17 -3.25 16 3 C -0.08 -2.30 2.19 -10.79 -0.02 -2.33 16 4 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 5 C -0.11 -3.12 4.96 30.60 0.15 -2.97 16 6 C -0.11 -2.90 5.92 30.59 0.18 -2.72 16 7 C -0.14 -5.03 4.62 30.59 0.14 -4.89 16 8 C 0.10 3.84 2.18 44.92 0.10 3.94 16 9 H 0.08 2.58 8.03 -2.39 -0.02 2.56 16 10 N -0.52 -22.09 4.69 -850.38 -3.99 -26.07 16 11 C 0.20 10.54 3.17 85.56 0.27 10.81 16 12 C -0.49 -27.56 6.41 25.60 0.16 -27.40 16 13 H 0.06 3.56 6.34 -2.91 -0.02 3.54 16 14 C 0.00 0.12 5.46 84.65 0.46 0.58 16 15 N -0.94 -56.57 13.29 21.44 0.28 -56.29 16 16 Si 0.95 45.05 29.54 68.60 2.03 47.08 16 17 H -0.26 -12.02 7.11 99.48 0.71 -11.31 16 18 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 19 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 20 C 0.02 0.82 5.08 44.91 0.23 1.05 16 21 C -0.22 -7.93 9.56 30.62 0.29 -7.64 16 22 C -0.17 -5.86 9.90 30.62 0.30 -5.56 16 23 C -0.11 -4.23 3.21 30.59 0.10 -4.13 16 24 H 0.06 1.21 6.57 -2.38 -0.02 1.19 16 25 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 27 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 28 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.88 6.56 -2.39 -0.02 1.86 16 31 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.03 1.54 5.99 -2.39 -0.01 1.53 16 34 H 0.06 1.90 7.44 -2.39 -0.02 1.88 16 35 H -0.01 -0.61 5.32 -2.39 -0.01 -0.63 16 36 H 0.00 -0.03 5.40 -2.38 -0.01 -0.05 16 37 H 0.26 14.90 8.31 -92.71 -0.77 14.13 16 38 H 0.13 3.88 7.99 -2.39 -0.02 3.86 16 39 H 0.07 2.93 6.04 -2.39 -0.01 2.91 16 40 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 41 H 0.12 3.24 8.14 -2.39 -0.02 3.22 16 42 H 0.07 2.71 7.49 -2.38 -0.02 2.69 16 43 H 0.04 1.73 7.79 -2.39 -0.02 1.71 16 44 H 0.07 3.27 5.26 -2.39 -0.01 3.25 16 Total: -1.00 -62.40 322.52 2.50 -59.90 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.95 Total: 22.24 kcal Atomic # 6 Polarization: -50.08 SS G_CDS: 3.23 Total: -46.85 kcal Atomic # 7 Polarization: -78.66 SS G_CDS: -3.70 Total: -82.36 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -62.40 2.50 -59.90 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071147911.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.914 kcal (2) G-P(sol) polarization free energy of solvation -62.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds