Wall clock time and date at job start Mon Mar 30 2020 06:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46859 * 2 1 4 4 H 1.08998 * 109.47245 * 304.99850 * 3 2 1 5 5 C 1.53000 * 109.46919 * 65.00280 * 3 2 1 6 6 C 1.52997 * 109.47299 * 59.99934 * 5 3 2 7 7 C 1.52991 * 109.47478 * 59.99999 * 6 5 3 8 8 C 1.53003 * 109.47185 * 300.00116 * 7 6 5 9 9 H 1.08999 * 109.46837 * 300.00227 * 8 7 6 10 10 N 1.46898 * 109.47607 * 180.02562 * 8 7 6 11 11 C 1.46897 * 111.00486 * 183.95452 * 10 8 7 12 12 C 1.50694 * 109.47227 * 160.34249 * 11 10 8 13 13 H 1.07997 * 120.00334 * 354.27934 * 12 11 10 14 14 C 1.37881 * 120.00012 * 174.26637 * 12 11 10 15 15 N 1.31519 * 119.99765 * 0.02562 * 14 12 11 16 16 Si 1.86788 * 120.00224 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47262 * 90.00414 * 16 14 12 18 18 H 1.48506 * 109.47241 * 210.00286 * 16 14 12 19 19 H 1.48501 * 109.47309 * 330.00034 * 16 14 12 20 20 C 1.46902 * 110.99868 * 59.99364 * 10 8 7 21 21 C 1.52998 * 117.50009 * 261.35695 * 20 10 8 22 22 C 1.52998 * 60.00418 * 252.51489 * 21 20 10 23 23 C 1.52997 * 109.47007 * 59.99596 * 8 7 6 24 24 H 1.08997 * 109.47049 * 60.00259 * 1 2 3 25 25 H 1.08999 * 109.46782 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47408 * 299.99762 * 1 2 3 27 27 H 1.08998 * 109.47408 * 240.00238 * 2 1 3 28 28 H 1.08997 * 109.47049 * 119.99741 * 2 1 3 29 29 H 1.08999 * 109.47029 * 180.02562 * 5 3 2 30 30 H 1.08999 * 109.46978 * 299.99469 * 5 3 2 31 31 H 1.09002 * 109.46937 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.46806 * 299.99611 * 6 5 3 33 33 H 1.08999 * 109.47418 * 59.99987 * 7 6 5 34 34 H 1.09005 * 109.47601 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.46728 * 280.34596 * 11 10 8 36 36 H 1.09004 * 109.46611 * 40.34017 * 11 10 8 37 37 H 0.97003 * 119.99994 * 179.97438 * 15 14 12 38 38 H 1.09000 * 115.55018 * 47.07434 * 20 10 8 39 39 H 1.09003 * 117.50130 * 0.02562 * 21 20 10 40 40 H 1.09004 * 117.49272 * 145.02628 * 21 20 10 41 41 H 1.08996 * 117.49830 * 252.51779 * 22 21 20 42 42 H 1.08994 * 117.49998 * 107.48654 * 22 21 20 43 43 H 1.08999 * 109.47346 * 180.02562 * 23 8 7 44 44 H 1.08999 * 109.47164 * 60.00204 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 2.2453 1.3699 2.4890 7 6 3.7701 1.3718 2.3633 8 6 4.1749 0.6878 1.0559 9 1 3.8115 -0.3399 1.0559 10 7 5.6389 0.6890 0.9355 11 6 6.0617 0.1235 -0.3527 12 6 7.4703 0.5644 -0.6567 13 1 7.9655 1.2739 -0.0104 14 6 8.1270 0.0618 -1.7600 15 7 7.5239 -0.8020 -2.5472 16 14 9.8732 0.6077 -2.1365 17 1 10.8329 -0.3018 -1.4604 18 1 10.1000 0.5645 -3.6035 19 1 10.0752 1.9945 -1.6452 20 6 6.2599 -0.0306 2.0556 21 6 6.8000 0.8037 3.2188 22 6 7.7696 0.1281 2.2471 23 6 3.5648 1.4444 -0.1256 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9981 3.1543 1.3072 30 1 0.5489 2.1252 1.3969 31 1 1.9565 1.8570 3.4204 32 1 1.8820 0.3423 2.4889 33 1 4.1334 2.3994 2.3633 34 1 4.2048 0.8331 3.2054 35 1 6.0246 -0.9646 -0.3015 36 1 5.3936 0.4733 -1.1397 37 1 7.9858 -1.1554 -3.3236 38 1 5.8218 -1.0003 2.2920 39 1 6.6942 1.8866 3.1532 40 1 6.7170 0.3830 4.2209 41 1 8.3245 -0.7370 2.6100 42 1 8.3020 0.7664 1.5420 43 1 3.8528 0.9569 -1.0570 44 1 3.9281 2.4721 -0.1256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071147913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:17 Heat of formation + Delta-G solvation = 8.405018 kcal Electronic energy + Delta-G solvation = -19858.148392 eV Core-core repulsion = 17196.324468 eV Total energy + Delta-G solvation = -2661.823924 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.40899 -37.02260 -33.71160 -32.87861 -31.89968 -29.45011 -28.64764 -26.18310 -23.48867 -22.80494 -21.58771 -21.35863 -21.04222 -19.30992 -18.01882 -16.65002 -15.53816 -14.87236 -14.73930 -14.61666 -14.40566 -13.73051 -13.47899 -13.12871 -12.87947 -12.58806 -12.22101 -12.02591 -11.86854 -11.61673 -11.31331 -11.24200 -11.02022 -10.88175 -10.79574 -10.64404 -10.51438 -10.36421 -10.06167 -9.83825 -9.74490 -9.60924 -9.36435 -9.01015 -8.92745 -8.30280 -7.16470 -5.95775 -3.94627 3.34318 3.40801 3.44459 4.44860 4.65518 4.73043 4.93192 5.01848 5.20884 5.32609 5.39484 5.41965 5.50725 5.67489 5.71762 5.72895 5.79070 5.85289 5.89566 5.95346 5.97939 6.00806 6.11550 6.15868 6.23923 6.23996 6.30094 6.38330 6.43269 6.51633 6.59172 6.59646 6.72476 6.76444 6.86089 6.92548 7.09311 7.37684 7.48082 7.92983 8.22137 8.32294 8.65336 9.11581 9.67327 11.14765 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.006617 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.105380 B = 4230.516804 C = 5043.538096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.084 4.084 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.119 4.119 7 C -0.107 4.107 8 C 0.093 3.907 9 H 0.028 0.972 10 N -0.508 5.508 11 C 0.189 3.811 12 C -0.494 4.494 13 H 0.066 0.934 14 C 0.053 3.947 15 N -0.901 5.901 16 Si 0.892 3.108 17 H -0.282 1.282 18 H -0.288 1.288 19 H -0.274 1.274 20 C 0.030 3.970 21 C -0.185 4.185 22 C -0.158 4.158 23 C -0.110 4.110 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.059 0.941 35 H -0.007 1.007 36 H 0.035 0.965 37 H 0.259 0.741 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.073 0.927 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.810 2.951 8.524 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.162 4.162 3 C -0.103 4.103 4 H 0.083 0.917 5 C -0.150 4.150 6 C -0.157 4.157 7 C -0.145 4.145 8 C -0.016 4.016 9 H 0.046 0.954 10 N -0.233 5.233 11 C 0.065 3.935 12 C -0.533 4.533 13 H 0.084 0.916 14 C -0.148 4.148 15 N -0.541 5.541 16 Si 0.720 3.280 17 H -0.208 1.208 18 H -0.214 1.214 19 H -0.198 1.198 20 C -0.080 4.080 21 C -0.223 4.223 22 C -0.195 4.195 23 C -0.147 4.147 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.011 0.989 36 H 0.053 0.947 37 H 0.069 0.931 38 H 0.082 0.918 39 H 0.109 0.891 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.091 0.909 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.615 3.332 8.358 13.916 hybrid contribution 0.724 -0.757 -0.393 1.119 sum -9.891 2.575 7.965 12.958 Atomic orbital electron populations 1.21816 0.96557 1.01004 1.01438 1.21680 0.95062 0.97046 1.02404 1.21146 0.96225 0.95721 0.97251 0.91658 1.21573 0.99450 0.99172 0.94815 1.21567 0.96297 1.00327 0.97468 1.21559 0.94078 1.01389 0.97489 1.21463 0.89005 0.96708 0.94413 0.95419 1.61940 1.04385 1.53814 1.03125 1.19820 0.96304 0.93022 0.84354 1.21247 0.98396 1.24618 1.09045 0.91583 1.24971 0.98014 0.95382 0.96400 1.69960 1.37334 1.31095 1.15753 0.86595 0.85042 0.79059 0.77318 1.20824 1.21413 1.19849 1.21974 0.96564 0.95031 0.94385 1.23012 1.06421 0.99433 0.93414 1.23135 0.92496 1.02485 1.01412 1.21713 0.92826 1.01387 0.98794 0.93106 0.93314 0.92777 0.92049 0.91479 0.92234 0.92523 0.92725 0.92184 0.91749 0.92246 0.98864 0.94744 0.93134 0.91762 0.89077 0.90488 0.90396 0.86443 0.90861 0.91502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.67 37.16 0.36 -1.29 16 2 C -0.12 -1.65 4.70 -26.73 -0.13 -1.78 16 3 C -0.08 -1.16 2.66 -90.62 -0.24 -1.40 16 4 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 5 C -0.11 -1.37 5.21 -26.73 -0.14 -1.51 16 6 C -0.12 -1.49 5.65 -26.74 -0.15 -1.64 16 7 C -0.11 -1.62 4.84 -26.73 -0.13 -1.75 16 8 C 0.09 1.66 1.67 -67.71 -0.11 1.55 16 9 H 0.03 0.52 6.54 -51.93 -0.34 0.18 16 10 N -0.51 -10.85 4.44 -220.15 -0.98 -11.83 16 11 C 0.19 4.87 4.60 -4.98 -0.02 4.85 16 12 C -0.49 -13.62 7.79 -34.44 -0.27 -13.89 16 13 H 0.07 1.81 5.73 -52.49 -0.30 1.51 16 14 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 15 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 16 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 19 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 20 C 0.03 0.59 3.97 -67.71 -0.27 0.32 16 21 C -0.18 -3.13 9.31 -26.73 -0.25 -3.38 16 22 C -0.16 -3.09 9.46 -26.73 -0.25 -3.34 16 23 C -0.11 -1.89 4.46 -26.73 -0.12 -2.01 16 24 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.55 6.57 -51.93 -0.34 0.21 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.93 4.83 -51.93 -0.25 0.68 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.06 0.61 6.56 -51.93 -0.34 0.27 16 31 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.75 6.32 -51.93 -0.33 0.42 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 0.90 6.53 -51.93 -0.34 0.56 16 35 H -0.01 -0.19 8.00 -51.93 -0.42 -0.60 16 36 H 0.03 0.93 5.35 -51.93 -0.28 0.65 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.12 2.58 5.37 -51.93 -0.28 2.30 16 43 H 0.07 1.44 5.96 -51.93 -0.31 1.13 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 321.80 15.07 4.85 4.85 Total: -1.00 -28.45 321.80 -9.96 -38.41 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -7.73 Total: 1.82 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: -1.82 Total: -23.88 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: -0.24 Total: -37.83 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.45 -9.96 -38.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071147913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.814 kcal (2) G-P(sol) polarization free energy of solvation -28.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds