Wall clock time and date at job start Mon Mar 30 2020 06:47:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46859 * 2 1 4 4 H 1.08998 * 109.47245 * 304.99850 * 3 2 1 5 5 C 1.53000 * 109.46919 * 65.00280 * 3 2 1 6 6 C 1.52997 * 109.47299 * 59.99934 * 5 3 2 7 7 C 1.52991 * 109.47478 * 59.99999 * 6 5 3 8 8 C 1.53003 * 109.47185 * 300.00116 * 7 6 5 9 9 H 1.08999 * 109.46837 * 300.00227 * 8 7 6 10 10 N 1.46898 * 109.47607 * 180.02562 * 8 7 6 11 11 C 1.46897 * 111.00486 * 183.95452 * 10 8 7 12 12 C 1.50694 * 109.47227 * 160.34249 * 11 10 8 13 13 H 1.07997 * 120.00334 * 354.27934 * 12 11 10 14 14 C 1.37881 * 120.00012 * 174.26637 * 12 11 10 15 15 N 1.31519 * 119.99765 * 0.02562 * 14 12 11 16 16 Si 1.86788 * 120.00224 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.47262 * 90.00414 * 16 14 12 18 18 H 1.48506 * 109.47241 * 210.00286 * 16 14 12 19 19 H 1.48501 * 109.47309 * 330.00034 * 16 14 12 20 20 C 1.46902 * 110.99868 * 59.99364 * 10 8 7 21 21 C 1.52998 * 117.50009 * 261.35695 * 20 10 8 22 22 C 1.52998 * 60.00418 * 252.51489 * 21 20 10 23 23 C 1.52997 * 109.47007 * 59.99596 * 8 7 6 24 24 H 1.08997 * 109.47049 * 60.00259 * 1 2 3 25 25 H 1.08999 * 109.46782 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47408 * 299.99762 * 1 2 3 27 27 H 1.08998 * 109.47408 * 240.00238 * 2 1 3 28 28 H 1.08997 * 109.47049 * 119.99741 * 2 1 3 29 29 H 1.08999 * 109.47029 * 180.02562 * 5 3 2 30 30 H 1.08999 * 109.46978 * 299.99469 * 5 3 2 31 31 H 1.09002 * 109.46937 * 180.02562 * 6 5 3 32 32 H 1.08999 * 109.46806 * 299.99611 * 6 5 3 33 33 H 1.08999 * 109.47418 * 59.99987 * 7 6 5 34 34 H 1.09005 * 109.47601 * 179.97438 * 7 6 5 35 35 H 1.08997 * 109.46728 * 280.34596 * 11 10 8 36 36 H 1.09004 * 109.46611 * 40.34017 * 11 10 8 37 37 H 0.97003 * 119.99994 * 179.97438 * 15 14 12 38 38 H 1.09000 * 115.55018 * 47.07434 * 20 10 8 39 39 H 1.09003 * 117.50130 * 0.02562 * 21 20 10 40 40 H 1.09004 * 117.49272 * 145.02628 * 21 20 10 41 41 H 1.08996 * 117.49830 * 252.51779 * 22 21 20 42 42 H 1.08994 * 117.49998 * 107.48654 * 22 21 20 43 43 H 1.08999 * 109.47346 * 180.02562 * 23 8 7 44 44 H 1.08999 * 109.47164 * 60.00204 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 2.2453 1.3699 2.4890 7 6 3.7701 1.3718 2.3633 8 6 4.1749 0.6878 1.0559 9 1 3.8115 -0.3399 1.0559 10 7 5.6389 0.6890 0.9355 11 6 6.0617 0.1235 -0.3527 12 6 7.4703 0.5644 -0.6567 13 1 7.9655 1.2739 -0.0104 14 6 8.1270 0.0618 -1.7600 15 7 7.5239 -0.8020 -2.5472 16 14 9.8732 0.6077 -2.1365 17 1 10.8329 -0.3018 -1.4604 18 1 10.1000 0.5645 -3.6035 19 1 10.0752 1.9945 -1.6452 20 6 6.2599 -0.0306 2.0556 21 6 6.8000 0.8037 3.2188 22 6 7.7696 0.1281 2.2471 23 6 3.5648 1.4444 -0.1256 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.9981 3.1543 1.3072 30 1 0.5489 2.1252 1.3969 31 1 1.9565 1.8570 3.4204 32 1 1.8820 0.3423 2.4889 33 1 4.1334 2.3994 2.3633 34 1 4.2048 0.8331 3.2054 35 1 6.0246 -0.9646 -0.3015 36 1 5.3936 0.4733 -1.1397 37 1 7.9858 -1.1554 -3.3236 38 1 5.8218 -1.0003 2.2920 39 1 6.6942 1.8866 3.1532 40 1 6.7170 0.3830 4.2209 41 1 8.3245 -0.7370 2.6100 42 1 8.3020 0.7664 1.5420 43 1 3.8528 0.9569 -1.0570 44 1 3.9281 2.4721 -0.1256 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071147913.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:17 Heat of formation + Delta-G solvation = -6.899574 kcal Electronic energy + Delta-G solvation = -19858.812049 eV Core-core repulsion = 17196.324468 eV Total energy + Delta-G solvation = -2662.487581 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.75508 -38.48697 -35.37161 -34.58879 -33.34502 -30.73303 -30.14263 -27.99578 -24.77945 -24.36775 -23.08754 -22.68891 -22.48830 -20.93164 -19.21097 -18.62158 -17.07761 -16.63697 -16.24451 -15.97866 -15.77722 -15.17555 -14.87605 -14.47188 -14.31556 -14.04333 -13.80331 -13.49698 -13.24815 -12.92424 -12.83264 -12.70922 -12.60717 -12.35805 -12.31673 -12.17277 -11.86473 -11.70977 -11.50920 -11.30918 -11.15492 -11.06777 -10.91109 -10.66109 -10.59756 -10.35665 -8.94948 -8.14197 -6.21028 1.40037 1.40864 1.51973 2.41714 3.07016 3.16866 3.23709 3.79821 3.85375 4.05490 4.19450 4.20459 4.30579 4.32150 4.43359 4.46064 4.52996 4.59958 4.65507 4.73124 4.81461 4.86108 4.90086 4.92579 4.96348 5.07771 5.15196 5.19562 5.20935 5.23251 5.30503 5.32504 5.39681 5.40320 5.48694 5.51114 5.56015 5.56183 5.70648 5.79587 6.16697 6.49908 6.75636 6.94468 7.46026 8.96342 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023019 B = 0.006617 C = 0.005550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.105380 B = 4230.516804 C = 5043.538096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.079 4.079 4 H 0.072 0.928 5 C -0.108 4.108 6 C -0.114 4.114 7 C -0.098 4.098 8 C 0.092 3.908 9 H 0.015 0.985 10 N -0.512 5.512 11 C 0.207 3.793 12 C -0.502 4.502 13 H 0.068 0.932 14 C -0.002 4.002 15 N -0.939 5.939 16 Si 0.961 3.039 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.004 3.996 21 C -0.140 4.140 22 C -0.175 4.175 23 C -0.105 4.105 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.036 0.964 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.062 0.938 35 H -0.047 1.047 36 H 0.014 0.986 37 H 0.260 0.740 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.034 0.966 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.623 4.197 10.720 16.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.161 4.161 3 C -0.098 4.098 4 H 0.090 0.910 5 C -0.145 4.145 6 C -0.151 4.151 7 C -0.136 4.136 8 C -0.016 4.016 9 H 0.033 0.967 10 N -0.237 5.237 11 C 0.081 3.919 12 C -0.540 4.540 13 H 0.085 0.915 14 C -0.199 4.199 15 N -0.581 5.581 16 Si 0.786 3.214 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.189 1.189 20 C -0.105 4.105 21 C -0.178 4.178 22 C -0.212 4.212 23 C -0.143 4.143 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.081 0.919 35 H -0.029 1.029 36 H 0.031 0.969 37 H 0.069 0.931 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.053 0.947 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.437 4.590 10.578 16.241 hybrid contribution 0.966 -1.171 -1.075 1.861 sum -10.471 3.418 9.502 14.547 Atomic orbital electron populations 1.21766 0.94054 1.01838 1.02483 1.21642 0.97188 0.96319 1.00948 1.21118 0.93141 0.96497 0.99062 0.90990 1.21559 1.01008 0.98816 0.93106 1.21555 0.93848 1.00948 0.98789 1.21482 0.96388 1.00454 0.95242 1.21591 0.86892 0.96542 0.96609 0.96736 1.61926 1.06711 1.53274 1.01741 1.19446 0.95573 0.90386 0.86509 1.21541 0.99140 1.24325 1.08984 0.91450 1.25851 1.02361 0.95417 0.96237 1.70104 1.39193 1.32444 1.16340 0.85507 0.79805 0.79005 0.77088 1.19982 1.21119 1.18890 1.22098 0.96831 0.96024 0.95560 1.23031 1.01947 0.99149 0.93673 1.23087 0.92300 1.03265 1.02575 1.21642 0.95887 0.99945 0.96849 0.92568 0.92691 0.91128 0.94505 0.92105 0.91979 0.89928 0.90129 0.91940 0.92163 0.91914 1.02935 0.96852 0.93088 0.91972 0.88892 0.86924 0.89081 0.89174 0.94693 0.92515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.67 71.98 0.70 -2.15 16 2 C -0.12 -3.26 4.70 30.60 0.14 -3.11 16 3 C -0.08 -2.13 2.66 -10.79 -0.03 -2.16 16 4 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 5 C -0.11 -2.32 5.21 30.59 0.16 -2.16 16 6 C -0.11 -2.50 5.65 30.59 0.17 -2.33 16 7 C -0.10 -2.80 4.84 30.59 0.15 -2.65 16 8 C 0.09 3.37 1.67 44.92 0.08 3.45 16 9 H 0.01 0.58 6.54 -2.39 -0.02 0.56 16 10 N -0.51 -22.62 4.44 -850.42 -3.78 -26.39 16 11 C 0.21 11.29 4.60 85.56 0.39 11.68 16 12 C -0.50 -28.64 7.79 25.60 0.20 -28.45 16 13 H 0.07 3.77 5.73 -2.91 -0.02 3.76 16 14 C 0.00 -0.11 5.46 84.65 0.46 0.36 16 15 N -0.94 -57.92 13.29 21.45 0.28 -57.63 16 16 Si 0.96 45.24 29.54 68.60 2.03 47.27 16 17 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 18 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 19 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 20 C 0.00 0.16 3.97 44.92 0.18 0.34 16 21 C -0.14 -4.42 9.31 30.59 0.28 -4.14 16 22 C -0.18 -6.77 9.46 30.60 0.29 -6.48 16 23 C -0.11 -3.80 4.46 30.59 0.14 -3.67 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.07 1.17 6.57 -2.39 -0.02 1.16 16 27 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.06 1.67 4.83 -2.39 -0.01 1.65 16 29 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 30 H 0.08 1.42 6.56 -2.39 -0.02 1.40 16 31 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.06 1.38 6.32 -2.39 -0.02 1.36 16 33 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.75 6.53 -2.38 -0.02 1.74 16 35 H -0.05 -2.90 8.00 -2.39 -0.02 -2.91 16 36 H 0.01 0.79 5.35 -2.39 -0.01 0.78 16 37 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 38 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 40 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 41 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 42 H 0.09 4.01 5.37 -2.39 -0.01 3.99 16 43 H 0.03 1.50 5.96 -2.39 -0.01 1.48 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 Total: -1.00 -64.30 321.80 2.80 -61.51 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: 0.95 Total: 16.73 kcal Atomic # 6 Polarization: -44.79 SS G_CDS: 3.31 Total: -41.48 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -3.49 Total: -84.03 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.30 2.80 -61.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071147913.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.607 kcal (2) G-P(sol) polarization free energy of solvation -64.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds