Wall clock time and date at job start Mon Mar 30 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47368 * 2 1 4 4 H 1.09002 * 109.46498 * 304.99957 * 3 2 1 5 5 C 1.52996 * 109.47140 * 64.99424 * 3 2 1 6 6 C 1.53000 * 109.46711 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47295 * 300.00253 * 6 5 3 8 8 C 1.52993 * 109.47148 * 59.99986 * 7 6 5 9 9 H 1.09003 * 109.47092 * 60.00328 * 8 7 6 10 10 N 1.46901 * 109.47121 * 180.02562 * 8 7 6 11 11 C 1.46901 * 111.00142 * 58.95494 * 10 8 7 12 12 C 1.50699 * 109.47114 * 161.02246 * 11 10 8 13 13 H 1.07998 * 120.00001 * 354.07109 * 12 11 10 14 14 C 1.37879 * 120.00013 * 174.07733 * 12 11 10 15 15 N 1.31516 * 119.99541 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99986 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47322 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47353 * 119.99856 * 16 14 12 19 19 H 1.48502 * 109.46897 * 239.99750 * 16 14 12 20 20 C 1.46899 * 111.00075 * 294.99892 * 10 8 7 21 21 C 1.53004 * 117.49928 * 261.68300 * 20 10 8 22 22 C 1.52991 * 117.50108 * 193.05922 * 20 10 8 23 23 C 1.52999 * 109.46825 * 185.00045 * 3 2 1 24 24 H 1.09005 * 109.46942 * 60.00133 * 1 2 3 25 25 H 1.08996 * 109.47387 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46970 * 300.00800 * 1 2 3 27 27 H 1.08992 * 109.47007 * 239.99425 * 2 1 3 28 28 H 1.09005 * 109.46808 * 119.99328 * 2 1 3 29 29 H 1.09002 * 109.46990 * 60.00834 * 5 3 2 30 30 H 1.09000 * 109.47554 * 299.99927 * 5 3 2 31 31 H 1.09002 * 109.47278 * 180.02562 * 6 5 3 32 32 H 1.08993 * 109.47383 * 60.00107 * 6 5 3 33 33 H 1.08996 * 109.47334 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46856 * 300.00169 * 7 6 5 35 35 H 1.09002 * 109.46893 * 281.02289 * 11 10 8 36 36 H 1.09003 * 109.46898 * 41.01871 * 11 10 8 37 37 H 0.97003 * 119.99668 * 180.02562 * 15 14 12 38 38 H 1.08999 * 115.54800 * 47.38967 * 20 10 8 39 39 H 1.08998 * 117.49780 * 359.97438 * 21 20 10 40 40 H 1.09002 * 117.49420 * 145.02165 * 21 20 10 41 41 H 1.09001 * 117.50105 * 214.98179 * 22 20 10 42 42 H 1.09010 * 117.50028 * 359.97438 * 22 20 10 43 43 H 1.08996 * 109.47455 * 60.00066 * 23 3 2 44 44 H 1.08993 * 109.46941 * 299.99494 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1448 3.5693 1.3069 7 6 3.6696 3.5716 1.1809 8 6 4.0744 2.8874 -0.1263 9 1 3.6395 3.4262 -0.9682 10 7 5.5384 2.8891 -0.2470 11 6 6.1609 2.1913 0.8860 12 6 7.5706 1.8017 0.5228 13 1 7.9332 1.9614 -0.4819 14 6 8.3975 1.2413 1.4732 15 7 7.9560 1.0472 2.6968 16 14 10.1447 0.7577 1.0229 17 1 10.3940 1.0769 -0.4058 18 1 11.1014 1.5107 1.8731 19 1 10.3273 -0.6995 1.2433 20 6 6.0550 4.2588 -0.3697 21 6 6.3765 4.7692 -1.7758 22 6 7.5110 4.4281 -0.8078 23 6 3.5649 1.4442 -0.1257 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0699 1.5876 2.1491 30 1 0.5489 2.1254 1.3968 31 1 1.8568 4.0566 2.2384 32 1 1.7099 4.1080 0.4651 33 1 4.0327 4.5993 1.1811 34 1 4.1045 3.0328 2.0228 35 1 6.1782 2.8508 1.7537 36 1 5.5856 1.2959 1.1216 37 1 8.5378 0.6532 3.3655 38 1 5.6587 4.9768 0.3483 39 1 6.2051 4.0886 -2.6097 40 1 6.1916 5.8233 -1.9831 41 1 8.0727 5.2577 -0.3782 42 1 8.0860 3.5231 -1.0045 43 1 3.8532 0.9569 -1.0571 44 1 3.9994 0.9052 0.7161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071147917.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:22 Heat of formation + Delta-G solvation = 3.728748 kcal Electronic energy + Delta-G solvation = -19708.003947 eV Core-core repulsion = 17045.977245 eV Total energy + Delta-G solvation = -2662.026702 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.23259 -36.93855 -34.13296 -32.93579 -31.91708 -29.42975 -28.23341 -26.20832 -23.63910 -22.63422 -21.58707 -21.52051 -20.72671 -19.46685 -18.37989 -16.66105 -15.36827 -14.78648 -14.69597 -14.39190 -14.28248 -13.76984 -13.51776 -13.18970 -13.17291 -12.65743 -12.29254 -12.00999 -11.78856 -11.46881 -11.38084 -11.12027 -11.03142 -10.90159 -10.77146 -10.63329 -10.47445 -10.45130 -10.05805 -9.81566 -9.71016 -9.68263 -9.49047 -9.01153 -8.96568 -8.31627 -7.13304 -5.96034 -3.94794 3.33267 3.41093 3.45175 4.45412 4.65660 4.70788 4.94041 5.06053 5.21756 5.30662 5.38825 5.39776 5.49620 5.62320 5.71977 5.74700 5.81234 5.88943 5.91907 5.94414 5.97613 6.02657 6.10586 6.17041 6.22388 6.24620 6.29211 6.32818 6.40891 6.48655 6.58599 6.64981 6.66449 6.76585 6.88321 6.96469 7.09524 7.36489 7.50311 7.93076 8.21816 8.31914 8.65563 9.12002 9.67367 11.14530 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.006600 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.641152 B = 4241.313488 C = 4975.973198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.084 4.084 4 H 0.064 0.936 5 C -0.114 4.114 6 C -0.112 4.112 7 C -0.153 4.153 8 C 0.094 3.906 9 H 0.064 0.936 10 N -0.506 5.506 11 C 0.191 3.809 12 C -0.495 4.495 13 H 0.067 0.933 14 C 0.053 3.947 15 N -0.901 5.901 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.286 1.286 20 C 0.025 3.975 21 C -0.187 4.187 22 C -0.157 4.157 23 C -0.106 4.106 24 H 0.050 0.950 25 H 0.048 0.952 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.069 0.931 35 H -0.003 1.003 36 H 0.032 0.968 37 H 0.258 0.742 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.118 0.882 43 H 0.065 0.935 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.902 3.221 -4.634 13.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.103 4.103 4 H 0.082 0.918 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.192 4.192 8 C -0.015 4.015 9 H 0.082 0.918 10 N -0.229 5.229 11 C 0.067 3.933 12 C -0.534 4.534 13 H 0.085 0.915 14 C -0.148 4.148 15 N -0.541 5.541 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.084 4.084 21 C -0.225 4.225 22 C -0.194 4.194 23 C -0.144 4.144 24 H 0.069 0.931 25 H 0.067 0.933 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.015 0.985 36 H 0.050 0.950 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.136 0.864 43 H 0.083 0.917 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -11.698 2.882 -4.896 13.005 hybrid contribution 0.804 0.209 0.771 1.133 sum -10.894 3.091 -4.126 12.052 Atomic orbital electron populations 1.21817 0.96446 1.01033 1.01577 1.21560 0.95205 0.96856 1.02123 1.21153 0.96273 0.95273 0.97552 0.91783 1.21625 0.99675 0.95875 0.97926 1.21456 0.96279 0.96551 1.00749 1.22252 0.95278 1.00918 1.00725 1.21546 0.89399 0.95457 0.95074 0.91803 1.62125 1.02379 1.12175 1.46217 1.19783 0.94259 0.92901 0.86393 1.21318 0.96614 1.38766 0.96699 0.91541 1.24967 0.98441 0.96343 0.95001 1.69968 1.36214 1.45222 1.02716 0.86548 0.84933 0.78085 0.78510 1.19687 1.21244 1.21195 1.22066 0.99116 0.91549 0.95700 1.22996 1.05668 0.99609 0.94233 1.23120 0.91413 1.03166 1.01699 1.21679 0.93124 0.96628 1.02981 0.93070 0.93254 0.92687 0.92065 0.91965 0.92016 0.92497 0.92821 0.92626 0.92660 0.91208 0.98515 0.95020 0.93203 0.91250 0.89111 0.90432 0.90381 0.86418 0.91673 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.67 37.16 0.36 -1.20 16 2 C -0.12 -1.48 5.40 -26.73 -0.14 -1.62 16 3 C -0.08 -1.13 2.19 -90.62 -0.20 -1.33 16 4 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 5 C -0.11 -1.50 4.96 -26.73 -0.13 -1.63 16 6 C -0.11 -1.54 5.92 -26.73 -0.16 -1.70 16 7 C -0.15 -2.59 4.63 -26.73 -0.12 -2.72 16 8 C 0.09 1.69 2.23 -67.69 -0.15 1.54 16 9 H 0.06 1.10 8.13 -51.93 -0.42 0.68 16 10 N -0.51 -10.78 4.56 -220.12 -1.00 -11.78 16 11 C 0.19 4.85 3.56 -4.98 -0.02 4.84 16 12 C -0.50 -13.60 7.80 -34.44 -0.27 -13.87 16 13 H 0.07 1.82 5.66 -52.49 -0.30 1.52 16 14 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 15 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 16 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 C 0.02 0.49 4.66 -67.72 -0.32 0.18 16 21 C -0.19 -3.21 10.46 -26.73 -0.28 -3.49 16 22 C -0.16 -3.07 9.43 -26.74 -0.25 -3.32 16 23 C -0.11 -1.81 4.35 -26.70 -0.12 -1.93 16 24 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.55 6.56 -51.93 -0.34 0.21 16 27 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.06 0.65 6.57 -51.93 -0.34 0.31 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.05 0.94 6.43 -51.93 -0.33 0.61 16 34 H 0.07 1.37 6.83 -51.93 -0.35 1.01 16 35 H 0.00 -0.09 7.28 -51.93 -0.38 -0.46 16 36 H 0.03 0.85 5.60 -51.93 -0.29 0.56 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 38 H 0.07 1.36 6.44 -51.93 -0.33 1.02 16 39 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 40 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.12 2.60 5.36 -51.92 -0.28 2.32 16 43 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.07 1.42 6.08 -51.93 -0.32 1.11 16 LS Contribution 326.40 15.07 4.92 4.92 Total: -1.00 -28.34 326.40 -10.16 -38.50 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.90 Total: 2.54 kcal Atomic # 6 Polarization: -22.98 SS G_CDS: -1.90 Total: -24.87 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: -0.27 Total: -37.70 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -28.34 -10.16 -38.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071147917.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.231 kcal (2) G-P(sol) polarization free energy of solvation -28.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds