Wall clock time and date at job start Mon Mar 30 2020 06:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47368 * 2 1 4 4 H 1.09002 * 109.46498 * 304.99957 * 3 2 1 5 5 C 1.52996 * 109.47140 * 64.99424 * 3 2 1 6 6 C 1.53000 * 109.46711 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47295 * 300.00253 * 6 5 3 8 8 C 1.52993 * 109.47148 * 59.99986 * 7 6 5 9 9 H 1.09003 * 109.47092 * 60.00328 * 8 7 6 10 10 N 1.46901 * 109.47121 * 180.02562 * 8 7 6 11 11 C 1.46901 * 111.00142 * 58.95494 * 10 8 7 12 12 C 1.50699 * 109.47114 * 161.02246 * 11 10 8 13 13 H 1.07998 * 120.00001 * 354.07109 * 12 11 10 14 14 C 1.37879 * 120.00013 * 174.07733 * 12 11 10 15 15 N 1.31516 * 119.99541 * 359.97438 * 14 12 11 16 16 Si 1.86793 * 119.99986 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47322 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47353 * 119.99856 * 16 14 12 19 19 H 1.48502 * 109.46897 * 239.99750 * 16 14 12 20 20 C 1.46899 * 111.00075 * 294.99892 * 10 8 7 21 21 C 1.53004 * 117.49928 * 261.68300 * 20 10 8 22 22 C 1.52991 * 117.50108 * 193.05922 * 20 10 8 23 23 C 1.52999 * 109.46825 * 185.00045 * 3 2 1 24 24 H 1.09005 * 109.46942 * 60.00133 * 1 2 3 25 25 H 1.08996 * 109.47387 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46970 * 300.00800 * 1 2 3 27 27 H 1.08992 * 109.47007 * 239.99425 * 2 1 3 28 28 H 1.09005 * 109.46808 * 119.99328 * 2 1 3 29 29 H 1.09002 * 109.46990 * 60.00834 * 5 3 2 30 30 H 1.09000 * 109.47554 * 299.99927 * 5 3 2 31 31 H 1.09002 * 109.47278 * 180.02562 * 6 5 3 32 32 H 1.08993 * 109.47383 * 60.00107 * 6 5 3 33 33 H 1.08996 * 109.47334 * 180.02562 * 7 6 5 34 34 H 1.09003 * 109.46856 * 300.00169 * 7 6 5 35 35 H 1.09002 * 109.46893 * 281.02289 * 11 10 8 36 36 H 1.09003 * 109.46898 * 41.01871 * 11 10 8 37 37 H 0.97003 * 119.99668 * 180.02562 * 15 14 12 38 38 H 1.08999 * 115.54800 * 47.38967 * 20 10 8 39 39 H 1.08998 * 117.49780 * 359.97438 * 21 20 10 40 40 H 1.09002 * 117.49420 * 145.02165 * 21 20 10 41 41 H 1.09001 * 117.50105 * 214.98179 * 22 20 10 42 42 H 1.09010 * 117.50028 * 359.97438 * 22 20 10 43 43 H 1.08996 * 109.47455 * 60.00066 * 23 3 2 44 44 H 1.08993 * 109.46941 * 299.99494 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6352 2.1266 1.3073 6 6 2.1448 3.5693 1.3069 7 6 3.6696 3.5716 1.1809 8 6 4.0744 2.8874 -0.1263 9 1 3.6395 3.4262 -0.9682 10 7 5.5384 2.8891 -0.2470 11 6 6.1609 2.1913 0.8860 12 6 7.5706 1.8017 0.5228 13 1 7.9332 1.9614 -0.4819 14 6 8.3975 1.2413 1.4732 15 7 7.9560 1.0472 2.6968 16 14 10.1447 0.7577 1.0229 17 1 10.3940 1.0769 -0.4058 18 1 11.1014 1.5107 1.8731 19 1 10.3273 -0.6995 1.2433 20 6 6.0550 4.2588 -0.3697 21 6 6.3765 4.7692 -1.7758 22 6 7.5110 4.4281 -0.8078 23 6 3.5649 1.4442 -0.1257 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5140 0.8899 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 2.0699 1.5876 2.1491 30 1 0.5489 2.1254 1.3968 31 1 1.8568 4.0566 2.2384 32 1 1.7099 4.1080 0.4651 33 1 4.0327 4.5993 1.1811 34 1 4.1045 3.0328 2.0228 35 1 6.1782 2.8508 1.7537 36 1 5.5856 1.2959 1.1216 37 1 8.5378 0.6532 3.3655 38 1 5.6587 4.9768 0.3483 39 1 6.2051 4.0886 -2.6097 40 1 6.1916 5.8233 -1.9831 41 1 8.0727 5.2577 -0.3782 42 1 8.0860 3.5231 -1.0045 43 1 3.8532 0.9569 -1.0571 44 1 3.9994 0.9052 0.7161 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071147917.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:21 Heat of formation + Delta-G solvation = -11.314602 kcal Electronic energy + Delta-G solvation = -19708.656276 eV Core-core repulsion = 17045.977245 eV Total energy + Delta-G solvation = -2662.679031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.65073 -38.35589 -35.53816 -34.81065 -33.42885 -30.76418 -29.77993 -27.96492 -24.76860 -24.59173 -23.02309 -22.84853 -22.08827 -20.70346 -19.96422 -18.65660 -16.89512 -16.62678 -16.02966 -15.82340 -15.71023 -15.12184 -15.05875 -14.51319 -14.30275 -14.20090 -13.79875 -13.72238 -13.26412 -12.96739 -12.82798 -12.62810 -12.53119 -12.40771 -12.22104 -12.05065 -11.81023 -11.75404 -11.52630 -11.32820 -11.17971 -11.16366 -10.98899 -10.77583 -10.58685 -10.44865 -8.87838 -8.13592 -6.20215 1.39165 1.40194 1.52843 2.42051 3.08630 3.17778 3.25005 3.75442 3.87501 4.01920 4.15726 4.20579 4.26918 4.32755 4.36610 4.50651 4.53571 4.57760 4.68939 4.71935 4.75395 4.83418 4.85932 4.90878 4.94497 5.07621 5.15423 5.16032 5.19451 5.24641 5.31748 5.33629 5.36406 5.37788 5.46270 5.47806 5.52536 5.58665 5.68485 5.80179 6.18105 6.51048 6.76636 6.96412 7.47038 8.96875 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020173 B = 0.006600 C = 0.005626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1387.641152 B = 4241.313488 C = 4975.973198 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.075 4.075 4 H 0.083 0.917 5 C -0.111 4.111 6 C -0.106 4.106 7 C -0.145 4.145 8 C 0.093 3.907 9 H 0.084 0.916 10 N -0.513 5.513 11 C 0.214 3.786 12 C -0.503 4.503 13 H 0.067 0.933 14 C -0.001 4.001 15 N -0.939 5.939 16 Si 0.959 3.041 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.282 1.282 20 C 0.000 4.000 21 C -0.146 4.146 22 C -0.174 4.174 23 C -0.101 4.101 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.040 0.960 30 H 0.086 0.914 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.029 0.971 35 H -0.040 1.040 36 H 0.008 0.992 37 H 0.260 0.740 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.210 4.299 -6.432 15.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C -0.094 4.094 4 H 0.101 0.899 5 C -0.148 4.148 6 C -0.144 4.144 7 C -0.185 4.185 8 C -0.016 4.016 9 H 0.102 0.898 10 N -0.236 5.236 11 C 0.088 3.912 12 C -0.542 4.542 13 H 0.085 0.915 14 C -0.198 4.198 15 N -0.581 5.581 16 Si 0.784 3.216 17 H -0.186 1.186 18 H -0.207 1.207 19 H -0.208 1.208 20 C -0.109 4.109 21 C -0.184 4.184 22 C -0.211 4.211 23 C -0.139 4.139 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.048 0.952 35 H -0.022 1.022 36 H 0.026 0.974 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.074 0.926 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -13.018 3.969 -6.713 15.175 hybrid contribution 1.202 -0.108 1.319 1.788 sum -11.816 3.861 -5.394 13.551 Atomic orbital electron populations 1.21773 0.94201 1.01957 1.02380 1.21547 0.97107 0.95761 1.01355 1.21109 0.93285 0.96522 0.98479 0.89902 1.21621 1.01238 0.95156 0.96833 1.21439 0.93319 0.97299 1.02314 1.22138 0.97935 0.99819 0.98561 1.21681 0.87419 0.96280 0.96200 0.89779 1.62066 1.04419 1.13286 1.43834 1.19331 0.93671 0.91616 0.86550 1.21635 0.97592 1.38246 0.96678 0.91520 1.25827 1.02740 0.96379 0.94862 1.70108 1.37816 1.46287 1.03839 0.85486 0.79751 0.77687 0.78653 1.18621 1.20742 1.20811 1.22212 0.99596 0.90816 0.98299 1.23031 1.01726 1.01432 0.92193 1.23058 0.91508 1.02687 1.03830 1.21617 0.95917 0.95582 1.00795 0.91913 0.92407 0.92127 0.92252 0.93495 0.94112 0.89602 0.91700 0.90379 0.92863 0.95167 1.02209 0.97439 0.93138 0.91088 0.89000 0.86883 0.89050 0.89251 0.92553 0.94619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.63 9.67 71.98 0.70 -1.93 16 2 C -0.12 -2.85 5.40 30.60 0.17 -2.68 16 3 C -0.08 -1.95 2.19 -10.79 -0.02 -1.97 16 4 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 5 C -0.11 -2.78 4.96 30.59 0.15 -2.63 16 6 C -0.11 -2.72 5.92 30.60 0.18 -2.54 16 7 C -0.15 -5.01 4.63 30.59 0.14 -4.87 16 8 C 0.09 3.33 2.23 44.93 0.10 3.43 16 9 H 0.08 2.72 8.13 -2.39 -0.02 2.70 16 10 N -0.51 -22.39 4.56 -850.32 -3.88 -26.27 16 11 C 0.21 11.51 3.56 85.56 0.30 11.81 16 12 C -0.50 -28.62 7.80 25.60 0.20 -28.42 16 13 H 0.07 3.74 5.66 -2.91 -0.02 3.72 16 14 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 15 N -0.94 -57.73 13.29 21.45 0.28 -57.45 16 16 Si 0.96 45.25 29.54 68.60 2.03 47.28 16 17 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 19 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 20 C 0.00 -0.01 4.66 44.91 0.21 0.20 16 21 C -0.15 -4.64 10.46 30.59 0.32 -4.32 16 22 C -0.17 -6.71 9.43 30.59 0.29 -6.42 16 23 C -0.10 -3.54 4.35 30.61 0.13 -3.40 16 24 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 1.02 6.56 -2.39 -0.02 1.01 16 27 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.70 6.57 -2.39 -0.02 1.68 16 31 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.05 1.82 6.43 -2.39 -0.02 1.81 16 34 H 0.03 1.26 6.83 -2.39 -0.02 1.24 16 35 H -0.04 -2.40 7.28 -2.39 -0.02 -2.41 16 36 H 0.01 0.45 5.60 -2.39 -0.01 0.43 16 37 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 38 H 0.07 2.76 6.44 -2.39 -0.02 2.75 16 39 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 41 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.09 3.98 5.36 -2.38 -0.01 3.97 16 43 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 44 H 0.04 1.50 6.08 -2.39 -0.01 1.48 16 Total: -1.00 -63.89 326.40 2.70 -61.19 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: 0.94 Total: 18.62 kcal Atomic # 6 Polarization: -46.69 SS G_CDS: 3.33 Total: -43.36 kcal Atomic # 7 Polarization: -80.13 SS G_CDS: -3.60 Total: -83.72 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Total: -63.89 2.70 -61.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071147917.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.874 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds