Wall clock time and date at job start Mon Mar 30 2020 07:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47136 * 2 1 4 4 H 1.09010 * 109.46805 * 185.14869 * 3 2 1 5 5 C 1.50697 * 109.47172 * 305.14689 * 3 2 1 6 6 H 1.08002 * 120.00156 * 120.00532 * 5 3 2 7 7 C 1.37877 * 120.00255 * 299.99694 * 5 3 2 8 8 N 1.31514 * 119.99951 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00122 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46685 * 60.00857 * 9 7 5 11 11 H 1.48499 * 109.46950 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47170 * 300.00466 * 9 7 5 13 13 N 1.46893 * 109.47407 * 65.14901 * 3 2 1 14 14 C 1.46903 * 110.99949 * 85.83862 * 13 3 2 15 15 H 1.09002 * 109.47067 * 326.40433 * 14 13 3 16 16 C 1.52998 * 109.47217 * 86.40542 * 14 13 3 17 17 C 1.52995 * 109.47204 * 59.99859 * 16 14 13 18 18 C 1.52996 * 109.47152 * 60.00268 * 17 16 14 19 19 C 1.53000 * 109.47213 * 299.99977 * 18 17 16 20 20 H 1.09000 * 109.47358 * 299.99935 * 19 18 17 21 21 C 1.52996 * 109.47213 * 179.97438 * 19 18 17 22 22 C 1.53009 * 117.49889 * 128.74793 * 21 19 18 23 23 C 1.52998 * 117.50054 * 60.09077 * 21 19 18 24 24 C 1.53003 * 109.47262 * 59.99991 * 19 18 17 25 25 H 1.09001 * 109.46666 * 294.61398 * 1 2 3 26 26 H 1.08993 * 109.47108 * 54.60828 * 1 2 3 27 27 H 1.08997 * 109.47272 * 174.62108 * 1 2 3 28 28 H 1.09003 * 109.46443 * 240.00084 * 2 1 3 29 29 H 1.08997 * 109.46935 * 120.00492 * 2 1 3 30 30 H 0.97001 * 119.99860 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99820 * 321.88888 * 13 3 2 32 32 H 1.09004 * 109.47038 * 299.99512 * 16 14 13 33 33 H 1.09001 * 109.47093 * 180.02562 * 16 14 13 34 34 H 1.08992 * 109.47393 * 300.00020 * 17 16 14 35 35 H 1.09008 * 109.46992 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47246 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.47406 * 59.99679 * 18 17 16 38 38 H 1.09004 * 115.55323 * 274.41347 * 21 19 18 39 39 H 1.09000 * 117.49677 * 359.97438 * 22 21 19 40 40 H 1.08998 * 117.50069 * 145.01581 * 22 21 19 41 41 H 1.09006 * 117.49935 * 214.97858 * 23 21 19 42 42 H 1.08995 * 117.49832 * 359.96606 * 23 21 19 43 43 H 1.09000 * 109.46980 * 59.99712 * 24 19 18 44 44 H 1.08994 * 109.47286 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1262 1.4438 -0.0922 5 6 1.4363 2.1887 -1.1617 6 1 0.8272 3.0627 -0.9843 7 6 1.6617 1.7558 -2.4512 8 7 2.4032 0.6913 -2.6674 9 14 0.9128 2.6805 -3.8913 10 1 1.4074 4.0807 -3.8914 11 1 1.3022 2.0174 -5.1617 12 1 -0.5668 2.6780 -3.7655 13 7 1.6545 2.0982 1.2567 14 6 2.6422 1.8356 2.3120 15 1 3.0595 0.8375 2.1788 16 6 3.7641 2.8726 2.2300 17 6 3.1783 4.2736 2.4168 18 6 2.4992 4.3641 3.7848 19 6 1.3772 3.3271 3.8669 20 1 0.6444 3.5219 3.0839 21 6 0.6986 3.4173 5.2351 22 6 -0.8264 3.5400 5.2606 23 6 0.0451 4.7480 5.6133 24 6 1.9630 1.9261 3.6801 25 1 -0.3633 0.4280 0.9343 26 1 -0.3633 0.5951 -0.8377 27 1 -0.3633 -1.0231 -0.0963 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.5614 0.3866 -3.5746 31 1 0.7314 1.8112 1.5459 32 1 4.2480 2.8081 1.2554 33 1 4.4971 2.6775 3.0127 34 1 2.4455 4.4684 1.6338 35 1 3.9777 5.0124 2.3588 36 1 2.0822 5.3624 3.9181 37 1 3.2320 4.1693 4.5679 38 1 1.1706 2.8437 6.0328 39 1 -1.3460 3.5570 4.3026 40 1 -1.3574 3.0476 6.0752 41 1 0.0871 5.0498 6.6599 42 1 0.0992 5.5594 4.8876 43 1 2.6959 1.7313 4.4631 44 1 1.1637 1.1874 3.7381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081638750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:56 Heat of formation + Delta-G solvation = -5.568658 kcal Electronic energy + Delta-G solvation = -19745.097317 eV Core-core repulsion = 17082.667449 eV Total energy + Delta-G solvation = -2662.429868 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.17873 -36.86547 -35.04135 -32.11391 -30.59767 -30.18101 -28.05524 -25.73611 -23.40020 -22.94478 -22.55949 -21.50356 -19.93477 -19.57889 -18.20039 -16.14167 -15.89321 -14.88433 -14.65334 -14.39997 -14.09230 -13.67640 -13.47450 -12.80093 -12.75676 -12.48739 -12.06776 -11.83740 -11.72154 -11.48524 -11.39483 -11.26870 -10.86393 -10.69810 -10.62791 -10.48560 -10.30033 -10.22501 -10.06078 -9.94889 -9.67719 -9.56595 -9.40143 -9.32536 -8.87817 -8.28422 -7.07033 -5.92244 -3.93147 3.36585 3.41059 3.44225 3.89077 4.48274 4.71700 5.00132 5.01848 5.17779 5.31966 5.34866 5.39407 5.57741 5.65477 5.67603 5.83418 5.90309 5.94375 5.98921 6.01125 6.06865 6.18044 6.20248 6.30896 6.39012 6.39773 6.42001 6.44684 6.62147 6.70550 6.76612 6.79799 6.90080 6.95429 7.10714 7.35961 7.39698 7.57510 7.77210 7.96140 8.37944 8.66761 8.73133 9.12699 9.70319 11.14741 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.005838 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.226538 B = 4794.961539 C = 4845.599127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.145 4.145 3 C 0.216 3.784 4 H 0.032 0.968 5 C -0.484 4.484 6 H 0.060 0.940 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.279 1.279 11 H -0.290 1.290 12 H -0.279 1.279 13 N -0.674 5.674 14 C 0.086 3.914 15 H 0.033 0.967 16 C -0.101 4.101 17 C -0.109 4.109 18 C -0.103 4.103 19 C -0.049 4.049 20 H 0.083 0.917 21 C -0.144 4.144 22 C -0.183 4.183 23 C -0.183 4.183 24 C -0.109 4.109 25 H 0.026 0.974 26 H 0.068 0.932 27 H 0.021 0.979 28 H 0.091 0.909 29 H 0.009 0.991 30 H 0.258 0.742 31 H 0.325 0.675 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.044 0.956 36 H 0.052 0.948 37 H 0.049 0.951 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.093 0.907 43 H 0.056 0.944 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 3.889 13.795 14.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.185 4.185 3 C 0.108 3.892 4 H 0.050 0.950 5 C -0.523 4.523 6 H 0.078 0.922 7 C -0.144 4.144 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.216 1.216 12 H -0.205 1.205 13 N -0.305 5.305 14 C -0.025 4.025 15 H 0.051 0.949 16 C -0.140 4.140 17 C -0.147 4.147 18 C -0.140 4.140 19 C -0.068 4.068 20 H 0.101 0.899 21 C -0.162 4.162 22 C -0.220 4.220 23 C -0.220 4.220 24 C -0.147 4.147 25 H 0.045 0.955 26 H 0.087 0.913 27 H 0.040 0.960 28 H 0.109 0.891 29 H 0.027 0.973 30 H 0.068 0.932 31 H 0.143 0.857 32 H 0.081 0.919 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.114 0.886 39 H 0.113 0.887 40 H 0.105 0.895 41 H 0.105 0.895 42 H 0.112 0.888 43 H 0.075 0.925 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.382 4.390 13.464 14.228 hybrid contribution -0.559 -0.642 -0.589 1.035 sum -1.941 3.747 12.874 13.548 Atomic orbital electron populations 1.21588 0.97802 0.98551 1.00685 1.22104 0.94893 1.01425 1.00044 1.19210 0.95816 0.88317 0.85845 0.95034 1.21031 1.30266 1.11321 0.89710 0.92218 1.24904 0.95630 0.95170 0.98666 1.69875 1.39170 1.24018 1.20633 0.86676 0.79529 0.80013 0.81833 1.20429 1.21609 1.20487 1.60854 1.03389 1.62896 1.03406 1.21403 0.94045 0.96221 0.90789 0.94950 1.21452 0.96561 0.95233 1.00724 1.21377 0.99820 0.96139 0.97350 1.21469 0.97055 0.97900 0.97582 1.20661 0.97251 0.95105 0.93765 0.89868 1.22448 0.94395 0.99964 0.99430 1.23008 0.93600 1.02403 1.02964 1.22902 1.05355 0.92204 1.01504 1.21713 0.99309 0.96446 0.97188 0.95456 0.91273 0.95965 0.89102 0.97254 0.93191 0.85684 0.91931 0.93661 0.89853 0.93741 0.92883 0.93204 0.88564 0.88665 0.89467 0.89498 0.88812 0.92538 0.92657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.40 37.16 0.35 -2.40 16 2 C -0.15 -3.39 5.49 -26.73 -0.15 -3.54 16 3 C 0.22 5.22 2.14 -68.87 -0.15 5.07 16 4 H 0.03 0.86 7.22 -51.92 -0.37 0.48 16 5 C -0.48 -12.89 7.25 -34.44 -0.25 -13.14 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.54 5.28 -17.82 -0.09 1.44 16 8 N -0.90 -25.30 11.38 55.43 0.63 -24.67 16 9 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 13 N -0.67 -13.56 4.58 -100.95 -0.46 -14.02 16 14 C 0.09 1.51 2.61 -67.71 -0.18 1.33 16 15 H 0.03 0.62 7.16 -51.93 -0.37 0.25 16 16 C -0.10 -1.71 5.53 -26.73 -0.15 -1.86 16 17 C -0.11 -1.72 5.77 -26.74 -0.15 -1.87 16 18 C -0.10 -1.38 5.04 -26.73 -0.13 -1.52 16 19 C -0.05 -0.67 2.18 -90.62 -0.20 -0.87 16 20 H 0.08 1.29 7.20 -51.93 -0.37 0.92 16 21 C -0.14 -1.69 5.14 -90.62 -0.47 -2.16 16 22 C -0.18 -2.03 10.18 -26.69 -0.27 -2.30 16 23 C -0.18 -1.96 9.74 -26.70 -0.26 -2.22 16 24 C -0.11 -1.58 4.55 -26.73 -0.12 -1.70 16 25 H 0.03 0.52 6.64 -51.93 -0.34 0.17 16 26 H 0.07 1.62 6.85 -51.93 -0.36 1.27 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.09 2.40 6.22 -51.93 -0.32 2.07 16 29 H 0.01 0.19 7.46 -51.93 -0.39 -0.19 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.32 6.39 6.02 -39.29 -0.24 6.15 16 32 H 0.06 1.20 7.54 -51.93 -0.39 0.81 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 1.52 7.60 -51.93 -0.39 1.12 16 35 H 0.04 0.65 8.14 -51.92 -0.42 0.22 16 36 H 0.05 0.68 7.29 -51.93 -0.38 0.30 16 37 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.10 1.08 8.11 -51.93 -0.42 0.66 16 39 H 0.09 1.11 8.05 -51.93 -0.42 0.69 16 40 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.09 1.03 7.61 -51.93 -0.40 0.63 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 LS Contribution 329.36 15.07 4.96 4.96 Total: -1.00 -26.45 329.36 -10.20 -36.65 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -8.09 Total: 6.46 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: -2.22 Total: -25.73 kcal Atomic # 7 Polarization: -38.86 SS G_CDS: 0.17 Total: -38.69 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -26.45 -10.20 -36.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081638750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.082 kcal (2) G-P(sol) polarization free energy of solvation -26.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds