Wall clock time and date at job start Mon Mar 30 2020 07:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47136 * 2 1 4 4 H 1.09010 * 109.46805 * 185.14869 * 3 2 1 5 5 C 1.50697 * 109.47172 * 305.14689 * 3 2 1 6 6 H 1.08002 * 120.00156 * 120.00532 * 5 3 2 7 7 C 1.37877 * 120.00255 * 299.99694 * 5 3 2 8 8 N 1.31514 * 119.99951 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00122 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.46685 * 60.00857 * 9 7 5 11 11 H 1.48499 * 109.46950 * 180.02562 * 9 7 5 12 12 H 1.48493 * 109.47170 * 300.00466 * 9 7 5 13 13 N 1.46893 * 109.47407 * 65.14901 * 3 2 1 14 14 C 1.46903 * 110.99949 * 85.83862 * 13 3 2 15 15 H 1.09002 * 109.47067 * 326.40433 * 14 13 3 16 16 C 1.52998 * 109.47217 * 86.40542 * 14 13 3 17 17 C 1.52995 * 109.47204 * 59.99859 * 16 14 13 18 18 C 1.52996 * 109.47152 * 60.00268 * 17 16 14 19 19 C 1.53000 * 109.47213 * 299.99977 * 18 17 16 20 20 H 1.09000 * 109.47358 * 299.99935 * 19 18 17 21 21 C 1.52996 * 109.47213 * 179.97438 * 19 18 17 22 22 C 1.53009 * 117.49889 * 128.74793 * 21 19 18 23 23 C 1.52998 * 117.50054 * 60.09077 * 21 19 18 24 24 C 1.53003 * 109.47262 * 59.99991 * 19 18 17 25 25 H 1.09001 * 109.46666 * 294.61398 * 1 2 3 26 26 H 1.08993 * 109.47108 * 54.60828 * 1 2 3 27 27 H 1.08997 * 109.47272 * 174.62108 * 1 2 3 28 28 H 1.09003 * 109.46443 * 240.00084 * 2 1 3 29 29 H 1.08997 * 109.46935 * 120.00492 * 2 1 3 30 30 H 0.97001 * 119.99860 * 179.97438 * 8 7 5 31 31 H 1.00904 * 110.99820 * 321.88888 * 13 3 2 32 32 H 1.09004 * 109.47038 * 299.99512 * 16 14 13 33 33 H 1.09001 * 109.47093 * 180.02562 * 16 14 13 34 34 H 1.08992 * 109.47393 * 300.00020 * 17 16 14 35 35 H 1.09008 * 109.46992 * 179.97438 * 17 16 14 36 36 H 1.09002 * 109.47246 * 179.97438 * 18 17 16 37 37 H 1.09005 * 109.47406 * 59.99679 * 18 17 16 38 38 H 1.09004 * 115.55323 * 274.41347 * 21 19 18 39 39 H 1.09000 * 117.49677 * 359.97438 * 22 21 19 40 40 H 1.08998 * 117.50069 * 145.01581 * 22 21 19 41 41 H 1.09006 * 117.49935 * 214.97858 * 23 21 19 42 42 H 1.08995 * 117.49832 * 359.96606 * 23 21 19 43 43 H 1.09000 * 109.46980 * 59.99712 * 24 19 18 44 44 H 1.08994 * 109.47286 * 180.02562 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1262 1.4438 -0.0922 5 6 1.4363 2.1887 -1.1617 6 1 0.8272 3.0627 -0.9843 7 6 1.6617 1.7558 -2.4512 8 7 2.4032 0.6913 -2.6674 9 14 0.9128 2.6805 -3.8913 10 1 1.4074 4.0807 -3.8914 11 1 1.3022 2.0174 -5.1617 12 1 -0.5668 2.6780 -3.7655 13 7 1.6545 2.0982 1.2567 14 6 2.6422 1.8356 2.3120 15 1 3.0595 0.8375 2.1788 16 6 3.7641 2.8726 2.2300 17 6 3.1783 4.2736 2.4168 18 6 2.4992 4.3641 3.7848 19 6 1.3772 3.3271 3.8669 20 1 0.6444 3.5219 3.0839 21 6 0.6986 3.4173 5.2351 22 6 -0.8264 3.5400 5.2606 23 6 0.0451 4.7480 5.6133 24 6 1.9630 1.9261 3.6801 25 1 -0.3633 0.4280 0.9343 26 1 -0.3633 0.5951 -0.8377 27 1 -0.3633 -1.0231 -0.0963 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8899 30 1 2.5614 0.3866 -3.5746 31 1 0.7314 1.8112 1.5459 32 1 4.2480 2.8081 1.2554 33 1 4.4971 2.6775 3.0127 34 1 2.4455 4.4684 1.6338 35 1 3.9777 5.0124 2.3588 36 1 2.0822 5.3624 3.9181 37 1 3.2320 4.1693 4.5679 38 1 1.1706 2.8437 6.0328 39 1 -1.3460 3.5570 4.3026 40 1 -1.3574 3.0476 6.0752 41 1 0.0871 5.0498 6.6599 42 1 0.0992 5.5594 4.8876 43 1 2.6959 1.7313 4.4631 44 1 1.1637 1.1874 3.7381 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081638750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:56 Heat of formation + Delta-G solvation = -17.794441 kcal Electronic energy + Delta-G solvation = -19745.627467 eV Core-core repulsion = 17082.667449 eV Total energy + Delta-G solvation = -2662.960018 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.42279 -38.18413 -36.55681 -33.98063 -32.25708 -31.39477 -29.63411 -27.65529 -25.20587 -24.17679 -23.58126 -22.60612 -21.45837 -20.85842 -19.67406 -18.11566 -17.03540 -16.71887 -16.24831 -15.58693 -15.39339 -15.09492 -14.97069 -14.42971 -14.25800 -13.95747 -13.82287 -13.22829 -13.11972 -12.82927 -12.76757 -12.51784 -12.43571 -12.41300 -12.29600 -11.91203 -11.83983 -11.60861 -11.45982 -11.28503 -11.21727 -11.12515 -10.91152 -10.63212 -10.45268 -10.38446 -8.77076 -8.02134 -6.09638 1.43771 1.44333 1.51642 2.47120 3.02335 3.26631 3.65362 3.81465 4.00354 4.02035 4.20441 4.25757 4.36685 4.49414 4.54609 4.60424 4.62804 4.72140 4.74190 4.80291 4.81396 4.86500 4.90973 4.95223 5.05636 5.13520 5.15138 5.21344 5.28041 5.36881 5.42891 5.46032 5.50064 5.53353 5.55624 5.63887 5.71966 5.77221 5.82934 5.92528 6.38730 6.79009 6.97202 7.07041 7.58205 9.03018 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024681 B = 0.005838 C = 0.005777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1134.226538 B = 4794.961539 C = 4845.599127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.138 4.138 3 C 0.225 3.775 4 H -0.007 1.007 5 C -0.493 4.493 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.922 5.922 9 Si 0.947 3.053 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.272 1.272 13 N -0.670 5.670 14 C 0.084 3.916 15 H 0.015 0.985 16 C -0.100 4.100 17 C -0.105 4.105 18 C -0.095 4.095 19 C -0.045 4.045 20 H 0.060 0.940 21 C -0.148 4.148 22 C -0.186 4.186 23 C -0.175 4.175 24 C -0.100 4.100 25 H 0.049 0.951 26 H 0.044 0.956 27 H 0.039 0.961 28 H 0.058 0.942 29 H 0.021 0.979 30 H 0.257 0.743 31 H 0.329 0.671 32 H 0.027 0.973 33 H 0.069 0.931 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.084 0.916 40 H 0.101 0.899 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.582 4.567 15.902 16.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.178 4.178 3 C 0.116 3.884 4 H 0.011 0.989 5 C -0.531 4.531 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.563 5.563 9 Si 0.774 3.226 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.197 1.197 13 N -0.301 5.301 14 C -0.027 4.027 15 H 0.033 0.967 16 C -0.138 4.138 17 C -0.143 4.143 18 C -0.133 4.133 19 C -0.063 4.063 20 H 0.078 0.922 21 C -0.166 4.166 22 C -0.223 4.223 23 C -0.212 4.212 24 C -0.137 4.137 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.147 0.853 32 H 0.046 0.954 33 H 0.088 0.912 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.127 0.873 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.122 0.878 42 H 0.107 0.893 43 H 0.095 0.905 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.240 5.077 15.584 16.543 hybrid contribution -0.250 -0.850 -1.227 1.514 sum -2.490 4.227 14.357 15.172 Atomic orbital electron populations 1.21457 0.95937 0.99428 1.00793 1.21955 0.96460 1.00419 0.98985 1.18909 0.93233 0.89039 0.87213 0.98915 1.21251 1.29954 1.11101 0.90841 0.93089 1.25572 0.96070 0.95896 1.00974 1.70015 1.40233 1.25203 1.20871 0.85774 0.79055 0.78755 0.78985 1.20279 1.21423 1.19712 1.60734 1.04165 1.62306 1.02935 1.21490 0.93848 0.95454 0.91872 0.96730 1.21437 0.96729 0.96020 0.99641 1.21308 0.99479 0.95466 0.98036 1.21417 0.97171 0.98500 0.96194 1.20549 0.96832 0.94395 0.94531 0.92160 1.22350 0.94682 1.01240 0.98345 1.23055 0.93265 1.02938 1.03021 1.22963 1.04229 0.91596 1.02393 1.21642 0.99581 0.97247 0.95274 0.93253 0.93648 0.94178 0.92329 0.96044 0.93401 0.85255 0.95427 0.91219 0.92986 0.92653 0.91880 0.91528 0.87336 0.89764 0.88055 0.87754 0.89300 0.90513 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.00 9.40 71.98 0.68 -4.32 16 2 C -0.14 -6.57 5.49 30.59 0.17 -6.41 16 3 C 0.22 11.22 2.14 44.17 0.09 11.32 16 4 H -0.01 -0.40 7.22 -2.38 -0.02 -0.42 16 5 C -0.49 -26.89 7.25 25.60 0.19 -26.70 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 7 C 0.01 0.70 5.28 84.65 0.45 1.15 16 8 N -0.92 -53.47 11.38 21.45 0.24 -53.22 16 9 Si 0.95 44.36 29.54 68.60 2.03 46.39 16 10 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 13 N -0.67 -27.37 4.58 -473.31 -2.17 -29.54 16 14 C 0.08 2.92 2.61 44.92 0.12 3.04 16 15 H 0.01 0.57 7.16 -2.39 -0.02 0.55 16 16 C -0.10 -3.38 5.53 30.59 0.17 -3.21 16 17 C -0.11 -3.24 5.77 30.59 0.18 -3.07 16 18 C -0.10 -2.35 5.04 30.59 0.15 -2.20 16 19 C -0.04 -1.12 2.18 -10.79 -0.02 -1.15 16 20 H 0.06 1.81 7.20 -2.39 -0.02 1.80 16 21 C -0.15 -3.03 5.14 -10.79 -0.06 -3.08 16 22 C -0.19 -3.65 10.18 30.62 0.31 -3.34 16 23 C -0.17 -3.21 9.74 30.62 0.30 -2.91 16 24 C -0.10 -2.69 4.55 30.60 0.14 -2.55 16 25 H 0.05 1.83 6.64 -2.39 -0.02 1.81 16 26 H 0.04 2.12 6.85 -2.39 -0.02 2.10 16 27 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.06 3.18 6.22 -2.39 -0.01 3.16 16 29 H 0.02 0.93 7.46 -2.39 -0.02 0.91 16 30 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 31 H 0.33 12.85 6.02 -89.69 -0.54 12.31 16 32 H 0.03 1.10 7.54 -2.39 -0.02 1.08 16 33 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.05 1.92 7.60 -2.39 -0.02 1.91 16 35 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.06 1.45 7.29 -2.39 -0.02 1.43 16 37 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 38 H 0.11 2.00 8.11 -2.38 -0.02 1.99 16 39 H 0.08 1.84 8.05 -2.39 -0.02 1.82 16 40 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.09 1.73 7.61 -2.39 -0.02 1.71 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 Total: -1.00 -58.05 329.36 3.36 -54.68 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: 0.41 Total: 25.14 kcal Atomic # 6 Polarization: -46.30 SS G_CDS: 2.86 Total: -43.44 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -1.93 Total: -82.77 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -58.05 3.36 -54.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081638750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.889 kcal (2) G-P(sol) polarization free energy of solvation -58.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds