Wall clock time and date at job start Mon Mar 30 2020 06:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47135 * 2 1 4 4 H 1.08997 * 110.43348 * 52.45354 * 3 2 1 5 5 C 1.54885 * 110.59742 * 289.83652 * 3 2 1 6 6 C 1.54893 * 102.75009 * 203.32760 * 5 3 2 7 7 C 1.54262 * 104.19715 * 37.94062 * 6 5 3 8 8 H 1.08994 * 110.03404 * 217.11024 * 7 6 5 9 9 N 1.46900 * 110.03232 * 95.67704 * 7 6 5 10 10 C 1.46895 * 111.00149 * 85.01092 * 9 7 6 11 11 C 1.53006 * 109.47210 * 184.84767 * 10 9 7 12 12 C 1.50697 * 115.54529 * 304.86187 * 11 10 9 13 13 H 1.08005 * 119.99955 * 143.01503 * 12 11 10 14 14 C 1.37874 * 120.00158 * 323.00799 * 12 11 10 15 15 N 1.31513 * 119.99771 * 168.77943 * 14 12 11 16 16 Si 1.86802 * 120.00009 * 348.77430 * 14 12 11 17 17 H 1.48494 * 109.46950 * 95.63013 * 16 14 12 18 18 H 1.48505 * 109.47198 * 215.62679 * 16 14 12 19 19 H 1.48497 * 109.47102 * 335.62662 * 16 14 12 20 20 C 1.52997 * 117.49558 * 159.19012 * 11 10 9 21 21 C 1.53001 * 117.49665 * 90.53041 * 11 10 9 22 22 C 1.53877 * 106.59666 * 336.39398 * 7 6 5 23 23 H 1.09002 * 110.03111 * 240.71234 * 22 7 6 24 24 C 1.52999 * 110.03408 * 119.33436 * 22 7 6 25 25 H 1.08999 * 109.46617 * 60.00244 * 1 2 3 26 26 H 1.08992 * 109.47350 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47230 * 300.00656 * 1 2 3 28 28 H 1.08993 * 109.47230 * 239.99344 * 2 1 3 29 29 H 1.09002 * 109.46709 * 119.99236 * 2 1 3 30 30 H 1.09003 * 110.75711 * 321.63897 * 5 3 2 31 31 H 1.08999 * 110.75870 * 84.82702 * 5 3 2 32 32 H 1.09003 * 110.48104 * 279.26617 * 6 5 3 33 33 H 1.08996 * 110.48769 * 156.61992 * 6 5 3 34 34 H 1.00907 * 111.00023 * 321.05331 * 9 7 6 35 35 H 1.09004 * 109.46997 * 304.84264 * 10 9 7 36 36 H 1.08998 * 109.47537 * 64.84377 * 10 9 7 37 37 H 0.97009 * 119.99827 * 180.02562 * 15 14 12 38 38 H 1.08994 * 117.50381 * 0.02562 * 20 11 10 39 39 H 1.08998 * 117.49392 * 145.01735 * 20 11 10 40 40 H 1.08999 * 117.49484 * 214.97670 * 21 11 10 41 41 H 1.08991 * 117.50303 * 359.97438 * 21 11 10 42 42 H 1.09002 * 109.47192 * 63.33385 * 24 22 7 43 43 H 1.08997 * 109.47229 * 183.33321 * 24 22 7 44 44 H 1.08999 * 109.47121 * 303.33587 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 2.0088 0.8098 5 6 1.7578 2.1202 -1.3638 6 6 2.8150 3.2513 -1.4088 7 6 4.0700 2.6218 -0.7697 8 1 4.5954 3.3641 -0.1689 9 7 4.9592 2.0993 -1.8158 10 6 5.8377 3.1555 -2.3358 11 6 6.6614 2.6056 -3.5021 12 6 7.4652 1.3666 -3.2027 13 1 7.5732 0.5982 -3.9540 14 6 8.0630 1.2138 -1.9697 15 7 8.5740 0.0517 -1.6261 16 14 8.1472 2.6575 -0.7872 17 1 7.0099 2.5845 0.1648 18 1 9.4265 2.6072 -0.0348 19 1 8.0721 3.9284 -1.5516 20 6 7.2596 3.6161 -4.4828 21 6 6.0752 2.7448 -4.9085 22 6 3.5772 1.4717 0.1260 23 1 3.8636 1.6559 1.1615 24 6 4.1686 0.1443 -0.3527 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.9091 1.4174 -2.1831 31 1 0.7481 2.5301 -1.3899 32 1 2.4802 4.1097 -0.8264 33 1 3.0174 3.5436 -2.4391 34 1 4.4293 1.6708 -2.5600 35 1 5.2328 3.9937 -2.6817 36 1 6.5078 3.4929 -1.5450 37 1 8.9942 -0.0559 -0.7584 38 1 7.0668 4.6726 -4.2970 39 1 8.2345 3.3845 -4.9118 40 1 6.2714 1.9404 -5.6173 41 1 5.1027 3.2277 -5.0029 42 1 5.2535 0.1720 -0.2507 43 1 3.7678 -0.6705 0.2503 44 1 3.9060 -0.0144 -1.3986 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083854477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:58 Heat of formation + Delta-G solvation = 20.189349 kcal Electronic energy + Delta-G solvation = -20023.964279 eV Core-core repulsion = 17362.651361 eV Total energy + Delta-G solvation = -2661.312917 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.38928 -37.08550 -34.27784 -32.01235 -31.46061 -30.70228 -27.12920 -25.56562 -24.78624 -23.85039 -22.60277 -21.37234 -19.73763 -19.03496 -18.16966 -16.59829 -15.85598 -15.26005 -14.82172 -14.45513 -14.20119 -13.72274 -13.35629 -13.29994 -12.84177 -12.61287 -12.57170 -12.22403 -11.88993 -11.83796 -11.30810 -11.20862 -10.91134 -10.72361 -10.60327 -10.53127 -10.41069 -10.24661 -10.14119 -10.07893 -9.81812 -9.62021 -9.29022 -9.12689 -8.59250 -8.19020 -7.46546 -5.97902 -3.90089 3.45159 3.46524 3.50866 4.56961 4.60000 4.78013 4.82499 4.92339 5.14387 5.30149 5.35779 5.40721 5.54336 5.66444 5.73353 5.74551 5.80762 5.85427 5.89841 5.92464 5.98483 6.00745 6.06848 6.14476 6.21088 6.25594 6.26866 6.29234 6.35108 6.40440 6.53775 6.59965 6.65388 6.71531 6.78910 6.87141 7.03718 7.19530 7.26792 7.82425 7.97357 8.21624 8.64174 9.04471 9.70573 11.14626 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023571 B = 0.007526 C = 0.006715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.629000 B = 3719.770063 C = 4168.786895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.088 4.088 4 H 0.065 0.935 5 C -0.113 4.113 6 C -0.156 4.156 7 C 0.083 3.917 8 H 0.067 0.933 9 N -0.645 5.645 10 C 0.081 3.919 11 C 0.016 3.984 12 C -0.470 4.470 13 H 0.071 0.929 14 C 0.097 3.903 15 N -0.893 5.893 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.311 1.311 19 H -0.272 1.272 20 C -0.211 4.211 21 C -0.194 4.194 22 C -0.080 4.080 23 H 0.061 0.939 24 C -0.121 4.121 25 H 0.052 0.948 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.342 0.658 35 H 0.009 0.991 36 H 0.063 0.937 37 H 0.262 0.738 38 H 0.063 0.937 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.036 0.964 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.007 3.941 3.204 14.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.107 4.107 4 H 0.084 0.916 5 C -0.151 4.151 6 C -0.195 4.195 7 C -0.028 4.028 8 H 0.086 0.914 9 N -0.275 5.275 10 C -0.047 4.047 11 C 0.015 3.985 12 C -0.507 4.507 13 H 0.089 0.911 14 C -0.106 4.106 15 N -0.530 5.530 16 Si 0.730 3.270 17 H -0.200 1.200 18 H -0.240 1.240 19 H -0.199 1.199 20 C -0.250 4.250 21 C -0.232 4.232 22 C -0.100 4.100 23 H 0.080 0.920 24 C -0.179 4.179 25 H 0.071 0.929 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.161 0.839 35 H 0.027 0.973 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.103 0.897 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -13.429 3.568 3.793 14.403 hybrid contribution -0.545 1.489 0.093 1.588 sum -13.974 5.056 3.886 15.361 Atomic orbital electron populations 1.21809 0.96694 1.01050 1.01365 1.21626 0.94732 0.96560 1.02385 1.22060 0.95835 0.95652 0.97152 0.91627 1.22488 0.97795 0.97325 0.97474 1.23117 0.97453 0.98148 1.00822 1.22219 0.91259 0.95098 0.94219 0.91442 1.60504 1.22013 1.29891 1.15052 1.21926 0.94430 0.91302 0.97035 1.19381 0.96912 0.96188 0.86032 1.20102 1.29808 1.00923 0.99833 0.91052 1.24750 0.94010 0.94836 0.97013 1.69936 1.38940 1.22731 1.21396 0.86843 0.75537 0.83420 0.81198 1.19971 1.23973 1.19926 1.23122 0.97110 0.95150 1.09610 1.22783 0.95694 1.02876 1.01836 1.21764 0.93176 0.96590 0.98431 0.92023 1.21566 1.02295 0.93720 1.00291 0.92905 0.93198 0.93286 0.91252 0.92064 0.91399 0.92397 0.92119 0.91882 0.83872 0.97257 0.91928 0.92876 0.91808 0.89720 0.90059 0.91577 0.91010 0.94538 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.79 37.16 0.36 -1.14 16 2 C -0.12 -1.34 4.09 -26.73 -0.11 -1.45 16 3 C -0.09 -1.10 2.77 -88.96 -0.25 -1.35 16 4 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 5 C -0.11 -1.40 5.68 -24.74 -0.14 -1.54 16 6 C -0.16 -2.15 6.15 -25.07 -0.15 -2.31 16 7 C 0.08 1.38 3.19 -66.60 -0.21 1.17 16 8 H 0.07 1.20 7.91 -51.93 -0.41 0.79 16 9 N -0.64 -12.64 3.93 -105.55 -0.41 -13.06 16 10 C 0.08 1.73 4.13 -3.82 -0.02 1.72 16 11 C 0.02 0.38 1.40 -155.66 -0.22 0.16 16 12 C -0.47 -13.01 9.27 -34.44 -0.32 -13.33 16 13 H 0.07 2.17 8.06 -52.48 -0.42 1.75 16 14 C 0.10 2.76 5.41 -17.82 -0.10 2.66 16 15 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 16 Si 0.90 22.60 24.02 -169.99 -4.08 18.52 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.31 -8.01 7.11 56.52 0.40 -7.61 16 19 H -0.27 -6.67 6.37 56.52 0.36 -6.31 16 20 C -0.21 -4.53 9.96 -26.69 -0.27 -4.80 16 21 C -0.19 -3.98 9.93 -26.69 -0.27 -4.25 16 22 C -0.08 -1.24 3.42 -89.50 -0.31 -1.54 16 23 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 24 C -0.12 -2.08 6.97 37.16 0.26 -1.82 16 25 H 0.05 0.51 7.56 -51.93 -0.39 0.12 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.86 6.88 -51.93 -0.36 0.50 16 29 H 0.06 0.72 7.39 -51.93 -0.38 0.33 16 30 H 0.07 0.87 7.97 -51.93 -0.41 0.46 16 31 H 0.06 0.64 8.05 -51.93 -0.42 0.22 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.90 7.55 -51.93 -0.39 0.51 16 34 H 0.34 6.51 7.78 -39.29 -0.31 6.21 16 35 H 0.01 0.18 7.55 -51.93 -0.39 -0.21 16 36 H 0.06 1.45 2.60 -51.93 -0.14 1.31 16 37 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 38 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 40 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 42 H 0.07 1.52 7.94 -51.93 -0.41 1.10 16 43 H 0.04 0.55 6.50 -51.93 -0.34 0.21 16 44 H 0.06 0.98 6.82 -51.93 -0.35 0.62 16 LS Contribution 326.82 15.07 4.93 4.93 Total: -1.00 -28.49 326.82 -8.64 -37.13 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -8.11 Total: 6.47 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: -1.73 Total: -27.81 kcal Atomic # 7 Polarization: -39.60 SS G_CDS: 0.36 Total: -39.24 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -4.08 Total: 18.52 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.49 -8.64 -37.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.320 kcal (2) G-P(sol) polarization free energy of solvation -28.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds