Wall clock time and date at job start Mon Mar 30 2020 06:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47135 * 2 1 4 4 H 1.08997 * 110.43348 * 52.45354 * 3 2 1 5 5 C 1.54885 * 110.59742 * 289.83652 * 3 2 1 6 6 C 1.54893 * 102.75009 * 203.32760 * 5 3 2 7 7 C 1.54262 * 104.19715 * 37.94062 * 6 5 3 8 8 H 1.08994 * 110.03404 * 217.11024 * 7 6 5 9 9 N 1.46900 * 110.03232 * 95.67704 * 7 6 5 10 10 C 1.46895 * 111.00149 * 85.01092 * 9 7 6 11 11 C 1.53006 * 109.47210 * 184.84767 * 10 9 7 12 12 C 1.50697 * 115.54529 * 304.86187 * 11 10 9 13 13 H 1.08005 * 119.99955 * 143.01503 * 12 11 10 14 14 C 1.37874 * 120.00158 * 323.00799 * 12 11 10 15 15 N 1.31513 * 119.99771 * 168.77943 * 14 12 11 16 16 Si 1.86802 * 120.00009 * 348.77430 * 14 12 11 17 17 H 1.48494 * 109.46950 * 95.63013 * 16 14 12 18 18 H 1.48505 * 109.47198 * 215.62679 * 16 14 12 19 19 H 1.48497 * 109.47102 * 335.62662 * 16 14 12 20 20 C 1.52997 * 117.49558 * 159.19012 * 11 10 9 21 21 C 1.53001 * 117.49665 * 90.53041 * 11 10 9 22 22 C 1.53877 * 106.59666 * 336.39398 * 7 6 5 23 23 H 1.09002 * 110.03111 * 240.71234 * 22 7 6 24 24 C 1.52999 * 110.03408 * 119.33436 * 22 7 6 25 25 H 1.08999 * 109.46617 * 60.00244 * 1 2 3 26 26 H 1.08992 * 109.47350 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47230 * 300.00656 * 1 2 3 28 28 H 1.08993 * 109.47230 * 239.99344 * 2 1 3 29 29 H 1.09002 * 109.46709 * 119.99236 * 2 1 3 30 30 H 1.09003 * 110.75711 * 321.63897 * 5 3 2 31 31 H 1.08999 * 110.75870 * 84.82702 * 5 3 2 32 32 H 1.09003 * 110.48104 * 279.26617 * 6 5 3 33 33 H 1.08996 * 110.48769 * 156.61992 * 6 5 3 34 34 H 1.00907 * 111.00023 * 321.05331 * 9 7 6 35 35 H 1.09004 * 109.46997 * 304.84264 * 10 9 7 36 36 H 1.08998 * 109.47537 * 64.84377 * 10 9 7 37 37 H 0.97009 * 119.99827 * 180.02562 * 15 14 12 38 38 H 1.08994 * 117.50381 * 0.02562 * 20 11 10 39 39 H 1.08998 * 117.49392 * 145.01735 * 20 11 10 40 40 H 1.08999 * 117.49484 * 214.97670 * 21 11 10 41 41 H 1.08991 * 117.50303 * 359.97438 * 21 11 10 42 42 H 1.09002 * 109.47192 * 63.33385 * 24 22 7 43 43 H 1.08997 * 109.47229 * 183.33321 * 24 22 7 44 44 H 1.08999 * 109.47121 * 303.33587 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5800 2.0088 0.8098 5 6 1.7578 2.1202 -1.3638 6 6 2.8150 3.2513 -1.4088 7 6 4.0700 2.6218 -0.7697 8 1 4.5954 3.3641 -0.1689 9 7 4.9592 2.0993 -1.8158 10 6 5.8377 3.1555 -2.3358 11 6 6.6614 2.6056 -3.5021 12 6 7.4652 1.3666 -3.2027 13 1 7.5732 0.5982 -3.9540 14 6 8.0630 1.2138 -1.9697 15 7 8.5740 0.0517 -1.6261 16 14 8.1472 2.6575 -0.7872 17 1 7.0099 2.5845 0.1648 18 1 9.4265 2.6072 -0.0348 19 1 8.0721 3.9284 -1.5516 20 6 7.2596 3.6161 -4.4828 21 6 6.0752 2.7448 -4.9085 22 6 3.5772 1.4717 0.1260 23 1 3.8636 1.6559 1.1615 24 6 4.1686 0.1443 -0.3527 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.9091 1.4174 -2.1831 31 1 0.7481 2.5301 -1.3899 32 1 2.4802 4.1097 -0.8264 33 1 3.0174 3.5436 -2.4391 34 1 4.4293 1.6708 -2.5600 35 1 5.2328 3.9937 -2.6817 36 1 6.5078 3.4929 -1.5450 37 1 8.9942 -0.0559 -0.7584 38 1 7.0668 4.6726 -4.2970 39 1 8.2345 3.3845 -4.9118 40 1 6.2714 1.9404 -5.6173 41 1 5.1027 3.2277 -5.0029 42 1 5.2535 0.1720 -0.2507 43 1 3.7678 -0.6705 0.2503 44 1 3.9060 -0.0144 -1.3986 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083854477.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:57 Heat of formation + Delta-G solvation = 4.380028 kcal Electronic energy + Delta-G solvation = -20024.649822 eV Core-core repulsion = 17362.651361 eV Total energy + Delta-G solvation = -2661.998461 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.61612 -38.75486 -35.54693 -34.17758 -32.64485 -31.91909 -28.58349 -27.30531 -26.05722 -25.46046 -23.53928 -23.05138 -21.04569 -20.77267 -19.38643 -18.39030 -17.41803 -16.97489 -16.10880 -15.79496 -15.35052 -15.15929 -15.00403 -14.80051 -14.41194 -14.06279 -13.89995 -13.61460 -13.37807 -12.97262 -12.76371 -12.47799 -12.38482 -12.22561 -12.13577 -11.89568 -11.78223 -11.64061 -11.47611 -11.31019 -11.20526 -11.11933 -10.99322 -10.96368 -10.46904 -10.21899 -8.92847 -8.19415 -6.13307 1.38013 1.43496 1.48548 2.45511 2.95244 3.35348 3.58907 3.68427 3.72839 3.98833 4.16955 4.25928 4.33597 4.39406 4.47233 4.50882 4.52961 4.56259 4.61306 4.73014 4.78204 4.82426 4.83970 4.87969 4.91316 5.01672 5.03579 5.07721 5.16049 5.22223 5.25707 5.30861 5.31380 5.36712 5.50255 5.51526 5.53074 5.64952 5.79754 5.80586 6.39344 6.44167 6.75456 6.84007 7.49922 8.97083 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023571 B = 0.007526 C = 0.006715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.629000 B = 3719.770063 C = 4168.786895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.078 4.078 4 H 0.081 0.919 5 C -0.107 4.107 6 C -0.146 4.146 7 C 0.077 3.923 8 H 0.055 0.945 9 N -0.663 5.663 10 C 0.089 3.911 11 C -0.016 4.016 12 C -0.467 4.467 13 H 0.026 0.974 14 C 0.049 3.951 15 N -0.942 5.942 16 Si 0.956 3.044 17 H -0.268 1.268 18 H -0.322 1.322 19 H -0.255 1.255 20 C -0.203 4.203 21 C -0.172 4.172 22 C -0.082 4.082 23 H 0.058 0.942 24 C -0.109 4.109 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.343 0.657 35 H 0.036 0.964 36 H 0.046 0.954 37 H 0.260 0.740 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.099 0.901 42 H 0.023 0.977 43 H 0.051 0.949 44 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.806 6.243 3.309 18.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C -0.097 4.097 4 H 0.099 0.901 5 C -0.145 4.145 6 C -0.185 4.185 7 C -0.033 4.033 8 H 0.073 0.927 9 N -0.294 5.294 10 C -0.039 4.039 11 C -0.017 4.017 12 C -0.504 4.504 13 H 0.044 0.956 14 C -0.149 4.149 15 N -0.582 5.582 16 Si 0.787 3.213 17 H -0.194 1.194 18 H -0.252 1.252 19 H -0.180 1.180 20 C -0.241 4.241 21 C -0.209 4.209 22 C -0.101 4.101 23 H 0.077 0.923 24 C -0.166 4.166 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.080 0.920 34 H 0.162 0.838 35 H 0.054 0.946 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.117 0.883 42 H 0.042 0.958 43 H 0.070 0.930 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.250 5.892 3.877 17.715 hybrid contribution 0.337 0.689 -0.026 0.767 sum -15.913 6.581 3.852 17.646 Atomic orbital electron populations 1.21762 0.94924 1.01721 1.02029 1.21596 0.96260 0.95786 1.01666 1.22001 0.93193 0.96516 0.97977 0.90109 1.22464 0.98539 0.96625 0.96839 1.23010 0.96070 0.98908 1.00555 1.22306 0.92096 0.95337 0.93552 0.92673 1.60425 1.23122 1.30238 1.15596 1.21736 0.94414 0.92300 0.95457 1.19357 0.98388 0.95495 0.88469 1.20235 1.29922 1.01705 0.98557 0.95556 1.25403 0.93930 0.96817 0.98746 1.70069 1.41157 1.24981 1.22010 0.85908 0.74851 0.81225 0.79281 1.19414 1.25191 1.18033 1.23122 0.97142 0.96207 1.07676 1.22802 0.96917 1.02165 0.98995 1.21781 0.95540 0.94909 0.97866 0.92335 1.21408 0.99139 0.95785 1.00313 0.92398 0.92648 0.92395 0.92460 0.92407 0.92121 0.90097 0.90464 0.92044 0.83761 0.94620 0.93687 0.93125 0.89089 0.90824 0.90916 0.88281 0.95790 0.93045 0.93224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.79 71.98 0.70 -1.75 16 2 C -0.12 -2.43 4.09 30.59 0.13 -2.31 16 3 C -0.08 -1.74 2.77 -9.72 -0.03 -1.77 16 4 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 5 C -0.11 -2.27 5.68 31.89 0.18 -2.09 16 6 C -0.15 -3.54 6.15 31.67 0.19 -3.34 16 7 C 0.08 2.45 3.19 45.64 0.15 2.59 16 8 H 0.05 1.87 7.91 -2.39 -0.02 1.85 16 9 N -0.66 -25.47 3.93 -487.84 -1.92 -27.38 16 10 C 0.09 3.63 4.13 86.31 0.36 3.98 16 11 C -0.02 -0.73 1.40 -52.93 -0.07 -0.80 16 12 C -0.47 -26.59 9.27 25.60 0.24 -26.35 16 13 H 0.03 1.68 8.06 -2.91 -0.02 1.66 16 14 C 0.05 2.89 5.41 84.65 0.46 3.35 16 15 N -0.94 -59.59 13.96 21.45 0.30 -59.29 16 16 Si 0.96 47.66 24.02 68.60 1.65 49.31 16 17 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 18 H -0.32 -16.45 7.11 99.48 0.71 -15.75 16 19 H -0.25 -11.83 6.37 99.48 0.63 -11.19 16 20 C -0.20 -8.21 9.96 30.62 0.30 -7.90 16 21 C -0.17 -6.62 9.93 30.62 0.30 -6.31 16 22 C -0.08 -2.42 3.42 -10.07 -0.03 -2.46 16 23 H 0.06 1.75 8.14 -2.39 -0.02 1.74 16 24 C -0.11 -3.79 6.97 71.98 0.50 -3.28 16 25 H 0.06 0.91 7.56 -2.39 -0.02 0.89 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.06 1.34 6.88 -2.39 -0.02 1.32 16 29 H 0.06 1.25 7.39 -2.39 -0.02 1.23 16 30 H 0.06 1.39 7.97 -2.39 -0.02 1.37 16 31 H 0.08 1.40 8.05 -2.39 -0.02 1.38 16 32 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.53 7.55 -2.39 -0.02 1.51 16 34 H 0.34 12.80 7.78 -89.69 -0.70 12.10 16 35 H 0.04 1.26 7.55 -2.39 -0.02 1.24 16 36 H 0.05 1.99 2.60 -2.39 -0.01 1.99 16 37 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 38 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 39 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 40 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 41 H 0.10 3.20 8.14 -2.39 -0.02 3.18 16 42 H 0.02 1.03 7.94 -2.39 -0.02 1.01 16 43 H 0.05 1.58 6.50 -2.39 -0.02 1.56 16 44 H 0.05 1.75 6.82 -2.39 -0.02 1.73 16 Total: -1.00 -63.84 326.82 3.59 -60.25 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: 0.18 Total: 25.56 kcal Atomic # 6 Polarization: -51.82 SS G_CDS: 3.38 Total: -48.44 kcal Atomic # 7 Polarization: -85.05 SS G_CDS: -1.62 Total: -86.67 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 1.65 Total: 49.31 kcal Total: -63.84 3.59 -60.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083854477.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.628 kcal (2) G-P(sol) polarization free energy of solvation -63.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds