Wall clock time and date at job start Mon Mar 30 2020 07:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46999 * 2 1 4 4 H 1.08999 * 109.47375 * 55.00180 * 3 2 1 5 5 C 1.50702 * 109.46688 * 174.99701 * 3 2 1 6 6 H 1.07999 * 119.99692 * 120.39489 * 5 3 2 7 7 C 1.37881 * 120.00439 * 300.38474 * 5 3 2 8 8 N 1.31513 * 119.99355 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00162 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47276 * 60.00375 * 9 7 5 11 11 H 1.48504 * 109.47208 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47117 * 299.99994 * 9 7 5 13 13 N 1.46896 * 109.47162 * 294.99583 * 3 2 1 14 14 C 1.47951 * 111.00105 * 184.60164 * 13 3 2 15 15 C 1.53987 * 86.19502 * 137.59528 * 14 13 3 16 16 C 1.47964 * 110.99893 * 283.95932 * 13 3 2 17 17 C 1.54176 * 111.88738 * 88.39903 * 15 14 13 18 18 C 1.54017 * 112.38510 * 90.61745 * 17 15 14 19 19 C 1.50606 * 111.30452 * 319.00839 * 18 17 15 20 20 C 1.53405 * 108.56132 * 94.52685 * 19 18 17 21 21 C 1.45952 * 113.42807 * 276.71654 * 20 19 18 22 22 C 1.50672 * 113.81319 * 221.75808 * 15 14 13 23 23 H 1.09003 * 109.47179 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47420 * 300.00130 * 1 2 3 25 25 H 1.08997 * 109.46687 * 60.00453 * 1 2 3 26 26 H 1.09002 * 109.47306 * 239.99461 * 2 1 3 27 27 H 1.09000 * 109.46640 * 120.00080 * 2 1 3 28 28 H 0.97006 * 119.99842 * 180.02562 * 8 7 5 29 29 H 1.09005 * 113.75710 * 23.27425 * 14 13 3 30 30 H 1.08994 * 113.76021 * 251.91983 * 14 13 3 31 31 H 1.08999 * 113.75676 * 108.08203 * 16 13 3 32 32 H 1.09001 * 113.75721 * 336.72274 * 16 13 3 33 33 H 1.09003 * 108.89798 * 329.86940 * 17 15 14 34 34 H 1.09002 * 108.90180 * 211.36418 * 17 15 14 35 35 H 1.08994 * 109.10141 * 79.46102 * 18 17 15 36 36 H 1.09006 * 109.09787 * 198.55733 * 18 17 15 37 37 H 1.09002 * 109.62569 * 214.15058 * 19 18 17 38 38 H 1.09003 * 109.62992 * 334.72248 * 19 18 17 39 39 H 1.09002 * 108.70933 * 155.69543 * 20 19 18 40 40 H 1.09003 * 108.60171 * 37.66127 * 20 19 18 41 41 H 1.09000 * 109.08101 * 301.84436 * 21 20 19 42 42 H 1.09006 * 109.02660 * 182.83922 * 21 20 19 43 43 H 1.08999 * 109.52885 * 80.69671 * 22 15 14 44 44 H 1.09004 * 109.52677 * 200.83998 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1470 1.8944 -0.6492 7 6 4.1436 0.8713 1.2243 8 7 3.4068 0.3228 2.1654 9 14 6.0052 0.8741 1.3781 10 1 6.4990 2.2745 1.3879 11 1 6.3985 0.2012 2.6422 12 1 6.5982 0.1481 0.2263 13 7 1.6515 2.0992 -1.2552 14 6 2.2214 3.4620 -1.3392 15 6 2.5382 3.1280 -2.8086 16 6 2.5078 1.6507 -2.3755 17 6 1.3631 3.4771 -3.7436 18 6 1.4576 4.9127 -4.2936 19 6 1.9089 5.8778 -3.2291 20 6 3.4305 6.0429 -3.3329 21 6 4.1763 4.9931 -2.6460 22 6 3.8944 3.6030 -3.2617 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8300 -0.0800 2.9398 29 1 3.1074 3.6063 -0.7208 30 1 1.4834 4.2548 -1.2183 31 1 1.9985 0.9961 -3.0827 32 1 3.4775 1.2655 -2.0600 33 1 0.4292 3.3713 -3.1915 34 1 1.3577 2.7783 -4.5801 35 1 2.1700 4.9325 -5.1182 36 1 0.4781 5.2191 -4.6610 37 1 1.4262 6.8431 -3.3817 38 1 1.6482 5.4865 -2.2457 39 1 3.7077 7.0059 -2.9041 40 1 3.7097 6.0373 -4.3865 41 1 3.8893 4.9819 -1.5945 42 1 5.2425 5.2069 -2.7218 43 1 4.6566 2.8970 -2.9319 44 1 3.9107 3.6751 -4.3492 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093965750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:59 Heat of formation + Delta-G solvation = 16.392008 kcal Electronic energy + Delta-G solvation = -20382.880122 eV Core-core repulsion = 17721.402540 eV Total energy + Delta-G solvation = -2661.477582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.42273 -36.87168 -33.82444 -32.12646 -31.57776 -30.08181 -26.93397 -25.37896 -24.81904 -24.31119 -22.60978 -21.15185 -19.80819 -19.01111 -17.41623 -16.20346 -15.71537 -15.34016 -14.48266 -14.18937 -13.84632 -13.67010 -13.35359 -12.95222 -12.80292 -12.47342 -12.38263 -11.84305 -11.63129 -11.59925 -11.46056 -11.07566 -10.84094 -10.71121 -10.50820 -10.34126 -10.26544 -10.15963 -10.02458 -9.75466 -9.69472 -9.47790 -9.41969 -9.22036 -8.86408 -8.34104 -7.38071 -6.00012 -4.11528 3.26655 3.32335 3.34350 4.38371 4.84103 4.87862 5.10246 5.21857 5.24902 5.33510 5.48150 5.54905 5.61610 5.68215 5.84844 5.97551 6.05009 6.23460 6.24887 6.32043 6.36628 6.40919 6.43383 6.49000 6.50568 6.54454 6.60383 6.61117 6.63814 6.71294 6.76047 6.81480 6.90820 6.95916 7.13841 7.20673 7.28700 7.55783 7.73735 8.02315 8.14506 8.16108 8.45711 8.99252 9.54580 11.00788 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021419 B = 0.008265 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.939635 B = 3386.973326 C = 4296.911190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.107 4.107 3 C 0.182 3.818 4 H 0.035 0.965 5 C -0.543 4.543 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.884 5.884 9 Si 0.885 3.115 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.277 1.277 13 N -0.483 5.483 14 C 0.015 3.985 15 C -0.087 4.087 16 C 0.012 3.988 17 C -0.086 4.086 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.109 4.109 21 C -0.124 4.124 22 C -0.098 4.098 23 H 0.024 0.976 24 H 0.038 0.962 25 H 0.046 0.954 26 H 0.028 0.972 27 H 0.091 0.909 28 H 0.261 0.739 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.090 0.910 33 H 0.068 0.932 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.052 0.948 43 H 0.062 0.938 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.372 7.479 -10.084 12.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C 0.075 3.925 4 H 0.053 0.947 5 C -0.582 4.582 6 H 0.082 0.918 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.205 5.205 14 C -0.113 4.113 15 C -0.088 4.088 16 C -0.117 4.117 17 C -0.124 4.124 18 C -0.151 4.151 19 C -0.166 4.166 20 C -0.147 4.147 21 C -0.161 4.161 22 C -0.136 4.136 23 H 0.043 0.957 24 H 0.057 0.943 25 H 0.065 0.935 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.071 0.929 29 H 0.100 0.900 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.091 0.909 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.090 7.265 -9.897 12.453 hybrid contribution 1.966 -0.076 0.379 2.004 sum -0.124 7.188 -9.518 11.928 Atomic orbital electron populations 1.21709 0.99024 0.98341 1.00453 1.21486 0.92078 0.99251 1.01712 1.19626 0.93310 0.91715 0.87875 0.94695 1.21713 0.92661 1.37955 1.05867 0.91820 1.24919 0.97693 0.95074 0.95722 1.69873 1.34847 1.37791 1.09670 0.86773 0.86304 0.78246 0.77407 1.20291 1.21290 1.20308 1.68628 1.44022 1.02237 1.05644 1.24101 0.98956 0.93858 0.94426 1.22085 0.94082 0.97180 0.95447 1.24122 0.99011 0.94080 0.94461 1.21660 0.98035 0.94845 0.97823 1.21360 1.00250 0.95503 0.98019 1.21416 0.95452 0.98485 1.01201 1.20361 0.95533 0.98467 1.00325 1.20641 0.99136 0.94890 1.01427 1.21318 0.96524 0.96225 0.99491 0.95670 0.94320 0.93473 0.95295 0.89092 0.92885 0.90021 0.91637 0.92327 0.89255 0.91293 0.93009 0.92749 0.93007 0.92941 0.90072 0.93235 0.93028 0.90943 0.92935 0.91901 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 9.80 37.16 0.36 -2.54 16 2 C -0.11 -2.58 5.30 -26.73 -0.14 -2.72 16 3 C 0.18 4.48 1.93 -68.87 -0.13 4.34 16 4 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 5 C -0.54 -14.06 6.24 -34.44 -0.21 -14.27 16 6 H 0.06 1.62 5.30 -52.49 -0.28 1.34 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -24.73 11.26 55.43 0.62 -24.10 16 9 Si 0.88 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 N -0.48 -10.18 5.42 -231.14 -1.25 -11.43 16 14 C 0.02 0.29 4.53 -2.75 -0.01 0.27 16 15 C -0.09 -1.43 0.78 -154.07 -0.12 -1.55 16 16 C 0.01 0.24 6.02 -2.74 -0.02 0.22 16 17 C -0.09 -1.25 4.92 -25.59 -0.13 -1.38 16 18 C -0.11 -1.41 5.44 -27.40 -0.15 -1.56 16 19 C -0.13 -1.60 5.57 -27.72 -0.15 -1.76 16 20 C -0.11 -1.34 5.19 -29.86 -0.16 -1.50 16 21 C -0.12 -1.73 5.26 -29.21 -0.15 -1.89 16 22 C -0.10 -1.47 5.17 -27.04 -0.14 -1.61 16 23 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 24 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 26 H 0.03 0.69 7.63 -51.93 -0.40 0.29 16 27 H 0.09 2.44 5.92 -51.93 -0.31 2.13 16 28 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.08 1.72 5.06 -51.93 -0.26 1.46 16 30 H 0.07 1.18 5.93 -51.93 -0.31 0.87 16 31 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 32 H 0.09 1.94 5.08 -51.93 -0.26 1.67 16 33 H 0.07 1.09 7.77 -51.93 -0.40 0.69 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 35 H 0.05 0.65 6.89 -51.93 -0.36 0.29 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 1.14 4.43 -51.93 -0.23 0.91 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.60 7.35 -51.93 -0.38 0.22 16 41 H 0.07 1.13 5.62 -51.93 -0.29 0.84 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 1.03 7.58 -51.93 -0.39 0.63 16 44 H 0.05 0.76 7.47 -51.93 -0.39 0.37 16 LS Contribution 310.26 15.07 4.68 4.68 Total: -1.00 -26.30 310.26 -9.82 -36.12 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -7.60 Total: 3.16 kcal Atomic # 6 Polarization: -22.94 SS G_CDS: -1.25 Total: -24.18 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: -0.63 Total: -35.53 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -26.30 -9.82 -36.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.508 kcal (2) G-P(sol) polarization free energy of solvation -26.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds