Wall clock time and date at job start Mon Mar 30 2020 07:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46999 * 2 1 4 4 H 1.08999 * 109.47375 * 55.00180 * 3 2 1 5 5 C 1.50702 * 109.46688 * 174.99701 * 3 2 1 6 6 H 1.07999 * 119.99692 * 120.39489 * 5 3 2 7 7 C 1.37881 * 120.00439 * 300.38474 * 5 3 2 8 8 N 1.31513 * 119.99355 * 0.02562 * 7 5 3 9 9 Si 1.86790 * 120.00162 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47276 * 60.00375 * 9 7 5 11 11 H 1.48504 * 109.47208 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47117 * 299.99994 * 9 7 5 13 13 N 1.46896 * 109.47162 * 294.99583 * 3 2 1 14 14 C 1.47951 * 111.00105 * 184.60164 * 13 3 2 15 15 C 1.53987 * 86.19502 * 137.59528 * 14 13 3 16 16 C 1.47964 * 110.99893 * 283.95932 * 13 3 2 17 17 C 1.54176 * 111.88738 * 88.39903 * 15 14 13 18 18 C 1.54017 * 112.38510 * 90.61745 * 17 15 14 19 19 C 1.50606 * 111.30452 * 319.00839 * 18 17 15 20 20 C 1.53405 * 108.56132 * 94.52685 * 19 18 17 21 21 C 1.45952 * 113.42807 * 276.71654 * 20 19 18 22 22 C 1.50672 * 113.81319 * 221.75808 * 15 14 13 23 23 H 1.09003 * 109.47179 * 179.97438 * 1 2 3 24 24 H 1.08996 * 109.47420 * 300.00130 * 1 2 3 25 25 H 1.08997 * 109.46687 * 60.00453 * 1 2 3 26 26 H 1.09002 * 109.47306 * 239.99461 * 2 1 3 27 27 H 1.09000 * 109.46640 * 120.00080 * 2 1 3 28 28 H 0.97006 * 119.99842 * 180.02562 * 8 7 5 29 29 H 1.09005 * 113.75710 * 23.27425 * 14 13 3 30 30 H 1.08994 * 113.76021 * 251.91983 * 14 13 3 31 31 H 1.08999 * 113.75676 * 108.08203 * 16 13 3 32 32 H 1.09001 * 113.75721 * 336.72274 * 16 13 3 33 33 H 1.09003 * 108.89798 * 329.86940 * 17 15 14 34 34 H 1.09002 * 108.90180 * 211.36418 * 17 15 14 35 35 H 1.08994 * 109.10141 * 79.46102 * 18 17 15 36 36 H 1.09006 * 109.09787 * 198.55733 * 18 17 15 37 37 H 1.09002 * 109.62569 * 214.15058 * 19 18 17 38 38 H 1.09003 * 109.62992 * 334.72248 * 19 18 17 39 39 H 1.09002 * 108.70933 * 155.69543 * 20 19 18 40 40 H 1.09003 * 108.60171 * 37.66127 * 20 19 18 41 41 H 1.09000 * 109.08101 * 301.84436 * 21 20 19 42 42 H 1.09006 * 109.02660 * 182.83922 * 21 20 19 43 43 H 1.08999 * 109.52885 * 80.69671 * 22 15 14 44 44 H 1.09004 * 109.52677 * 200.83998 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4442 0.1239 6 1 4.1470 1.8944 -0.6492 7 6 4.1436 0.8713 1.2243 8 7 3.4068 0.3228 2.1654 9 14 6.0052 0.8741 1.3781 10 1 6.4990 2.2745 1.3879 11 1 6.3985 0.2012 2.6422 12 1 6.5982 0.1481 0.2263 13 7 1.6515 2.0992 -1.2552 14 6 2.2214 3.4620 -1.3392 15 6 2.5382 3.1280 -2.8086 16 6 2.5078 1.6507 -2.3755 17 6 1.3631 3.4771 -3.7436 18 6 1.4576 4.9127 -4.2936 19 6 1.9089 5.8778 -3.2291 20 6 3.4305 6.0429 -3.3329 21 6 4.1763 4.9931 -2.6460 22 6 3.8944 3.6030 -3.2617 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 3.8300 -0.0800 2.9398 29 1 3.1074 3.6063 -0.7208 30 1 1.4834 4.2548 -1.2183 31 1 1.9985 0.9961 -3.0827 32 1 3.4775 1.2655 -2.0600 33 1 0.4292 3.3713 -3.1915 34 1 1.3577 2.7783 -4.5801 35 1 2.1700 4.9325 -5.1182 36 1 0.4781 5.2191 -4.6610 37 1 1.4262 6.8431 -3.3817 38 1 1.6482 5.4865 -2.2457 39 1 3.7077 7.0059 -2.9041 40 1 3.7097 6.0373 -4.3865 41 1 3.8893 4.9819 -1.5945 42 1 5.2425 5.2069 -2.7218 43 1 4.6566 2.8970 -2.9319 44 1 3.9107 3.6751 -4.3492 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093965750.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:22:59 Heat of formation + Delta-G solvation = 2.379496 kcal Electronic energy + Delta-G solvation = -20383.487750 eV Core-core repulsion = 17721.402540 eV Total energy + Delta-G solvation = -2662.085210 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.88292 -38.24887 -35.58371 -33.52277 -33.21450 -31.52672 -28.74484 -26.94030 -26.32250 -25.64525 -24.22594 -22.62007 -20.93486 -20.83507 -18.88260 -18.09869 -17.29416 -16.61875 -16.22205 -15.45211 -15.32911 -15.05782 -14.88651 -14.64556 -14.03939 -13.92479 -13.86184 -13.41549 -13.28896 -13.03030 -12.91552 -12.72083 -12.59768 -12.48023 -12.11078 -11.76795 -11.60842 -11.47745 -11.38014 -11.26793 -11.12701 -11.11261 -11.04737 -10.72567 -10.48322 -10.37280 -9.17800 -8.05137 -6.23532 1.37856 1.38460 1.45310 2.39737 3.15807 3.50172 3.55810 3.91790 4.00241 4.26373 4.30661 4.35387 4.46699 4.52011 4.54485 4.63749 4.69958 4.81839 4.85632 4.90567 4.94335 5.06014 5.08329 5.09336 5.11881 5.23042 5.23931 5.29886 5.33594 5.37058 5.40078 5.43710 5.50968 5.52940 5.57889 5.66255 5.68819 5.72046 5.81995 6.06200 6.14673 6.29000 6.46996 6.98864 7.45484 8.93369 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021419 B = 0.008265 C = 0.006515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.939635 B = 3386.973326 C = 4296.911190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.189 3.811 4 H -0.005 1.005 5 C -0.545 4.545 6 H 0.065 0.935 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.944 3.056 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.486 5.486 14 C 0.016 3.984 15 C -0.063 4.063 16 C 0.008 3.992 17 C -0.083 4.083 18 C -0.108 4.108 19 C -0.129 4.129 20 C -0.108 4.108 21 C -0.120 4.120 22 C -0.097 4.097 23 H 0.045 0.955 24 H 0.031 0.969 25 H 0.054 0.946 26 H 0.025 0.975 27 H 0.061 0.939 28 H 0.260 0.740 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.067 0.933 41 H 0.049 0.951 42 H 0.061 0.939 43 H 0.045 0.955 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.163 8.697 -12.368 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.141 4.141 3 C 0.081 3.919 4 H 0.013 0.987 5 C -0.583 4.583 6 H 0.083 0.917 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.197 1.197 13 N -0.208 5.208 14 C -0.113 4.113 15 C -0.063 4.063 16 C -0.121 4.121 17 C -0.121 4.121 18 C -0.146 4.146 19 C -0.167 4.167 20 C -0.145 4.145 21 C -0.158 4.158 22 C -0.135 4.135 23 H 0.064 0.936 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.881 8.491 -12.194 14.978 hybrid contribution 1.870 -0.445 1.089 2.209 sum -0.012 8.046 -11.105 13.714 Atomic orbital electron populations 1.21569 0.96544 0.99743 1.00460 1.21341 0.94286 0.98479 0.99977 1.19398 0.92475 0.91782 0.88243 0.98698 1.21972 0.93563 1.37116 1.05685 0.91666 1.25645 1.01724 0.95091 0.95641 1.70015 1.36339 1.38798 1.10137 0.85825 0.81522 0.78326 0.77314 1.19768 1.21258 1.19723 1.68582 1.44496 1.03319 1.04434 1.24073 0.98094 0.92872 0.96246 1.21970 0.95922 0.94173 0.94243 1.24100 0.97460 0.96498 0.94067 1.21640 0.96035 0.97002 0.97408 1.21331 1.01601 0.93530 0.98095 1.21415 0.95786 0.99367 1.00085 1.20339 0.95096 0.98066 1.01042 1.20614 1.00101 0.94847 1.00206 1.21310 0.94843 0.96472 1.00860 0.93557 0.95000 0.92650 0.95645 0.92009 0.93107 0.92529 0.90741 0.91441 0.91689 0.92714 0.91929 0.91386 0.91494 0.91198 0.92159 0.92250 0.91426 0.93205 0.92038 0.93642 0.90428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 9.80 71.98 0.71 -4.58 16 2 C -0.10 -5.06 5.30 30.59 0.16 -4.89 16 3 C 0.19 9.62 1.93 44.17 0.09 9.71 16 4 H 0.00 -0.29 8.14 -2.39 -0.02 -0.31 16 5 C -0.54 -29.03 6.24 25.60 0.16 -28.87 16 6 H 0.07 3.40 5.30 -2.91 -0.02 3.38 16 7 C 0.02 1.02 5.29 84.66 0.45 1.46 16 8 N -0.91 -52.78 11.26 21.45 0.24 -52.54 16 9 Si 0.94 43.38 29.54 68.60 2.03 45.41 16 10 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 N -0.49 -20.78 5.42 -885.21 -4.79 -25.57 16 14 C 0.02 0.60 4.53 86.42 0.39 0.99 16 15 C -0.06 -1.98 0.78 -51.86 -0.04 -2.02 16 16 C 0.01 0.30 6.02 86.42 0.52 0.82 16 17 C -0.08 -2.22 4.92 31.34 0.15 -2.06 16 18 C -0.11 -2.28 5.44 30.16 0.16 -2.12 16 19 C -0.13 -2.85 5.57 29.95 0.17 -2.68 16 20 C -0.11 -2.32 5.19 28.57 0.15 -2.17 16 21 C -0.12 -3.16 5.26 28.99 0.15 -3.01 16 22 C -0.10 -2.76 5.17 30.40 0.16 -2.60 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.05 2.21 7.75 -2.39 -0.02 2.19 16 26 H 0.02 1.23 7.63 -2.39 -0.02 1.21 16 27 H 0.06 3.43 5.92 -2.39 -0.01 3.42 16 28 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 29 H 0.06 2.47 5.06 -2.38 -0.01 2.45 16 30 H 0.07 2.70 5.93 -2.39 -0.01 2.68 16 31 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 32 H 0.07 2.86 5.08 -2.39 -0.01 2.85 16 33 H 0.05 1.62 7.77 -2.39 -0.02 1.61 16 34 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.07 1.29 6.89 -2.39 -0.02 1.28 16 36 H 0.07 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.59 4.43 -2.39 -0.01 1.58 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.27 7.35 -2.39 -0.02 1.26 16 41 H 0.05 1.54 5.62 -2.39 -0.01 1.52 16 42 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.04 1.45 7.58 -2.39 -0.02 1.43 16 44 H 0.08 1.87 7.47 -2.39 -0.02 1.86 16 Total: -1.00 -57.66 310.26 1.81 -55.86 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 0.96 Total: 18.87 kcal Atomic # 6 Polarization: -45.39 SS G_CDS: 3.37 Total: -42.02 kcal Atomic # 7 Polarization: -73.56 SS G_CDS: -4.55 Total: -78.11 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -57.66 1.81 -55.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965750.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.236 kcal (2) G-P(sol) polarization free energy of solvation -57.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds