Wall clock time and date at job start Mon Mar 30 2020 07:23:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46858 * 2 1 4 4 H 1.09003 * 109.47063 * 304.99458 * 3 2 1 5 5 C 1.50704 * 109.46818 * 185.00310 * 3 2 1 6 6 H 1.08004 * 119.99549 * 239.87762 * 5 3 2 7 7 C 1.37872 * 120.00247 * 59.87161 * 5 3 2 8 8 N 1.31512 * 120.00281 * 0.02562 * 7 5 3 9 9 Si 1.86806 * 119.99834 * 180.02562 * 7 5 3 10 10 H 1.48494 * 109.47066 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46879 * 120.00144 * 9 7 5 12 12 H 1.48497 * 109.47018 * 240.00179 * 9 7 5 13 13 N 1.46896 * 109.47545 * 64.99827 * 3 2 1 14 14 C 1.47496 * 110.99824 * 74.05010 * 13 3 2 15 15 C 1.53432 * 87.90102 * 138.70109 * 14 13 3 16 16 C 1.47503 * 110.99946 * 170.02291 * 13 3 2 17 17 C 1.54157 * 112.35203 * 85.50415 * 15 14 13 18 18 C 1.54009 * 112.35713 * 91.99308 * 17 15 14 19 19 C 1.50611 * 111.30433 * 318.99787 * 18 17 15 20 20 C 1.53434 * 108.51536 * 94.48689 * 19 18 17 21 21 C 1.45951 * 113.52008 * 276.66983 * 20 19 18 22 22 C 1.50627 * 114.36820 * 220.07201 * 15 14 13 23 23 H 1.08998 * 109.46807 * 300.00642 * 1 2 3 24 24 H 1.08994 * 109.47266 * 60.00108 * 1 2 3 25 25 H 1.09000 * 109.46997 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47200 * 240.00024 * 2 1 3 27 27 H 1.08998 * 109.47000 * 119.99465 * 2 1 3 28 28 H 0.96995 * 119.99962 * 180.02562 * 8 7 5 29 29 H 1.09004 * 113.48196 * 253.46213 * 14 13 3 30 30 H 1.08999 * 113.48379 * 23.94595 * 14 13 3 31 31 H 1.08996 * 113.48256 * 336.05839 * 16 13 3 32 32 H 1.09000 * 113.47769 * 106.54762 * 16 13 3 33 33 H 1.08998 * 108.90469 * 212.73542 * 17 15 14 34 34 H 1.09001 * 108.90671 * 331.25200 * 17 15 14 35 35 H 1.09002 * 109.11204 * 198.52780 * 18 17 15 36 36 H 1.09007 * 109.06396 * 79.43781 * 18 17 15 37 37 H 1.08999 * 109.62931 * 334.77828 * 19 18 17 38 38 H 1.09002 * 109.78735 * 214.28796 * 19 18 17 39 39 H 1.09004 * 108.67432 * 155.62515 * 20 19 18 40 40 H 1.09001 * 108.57471 * 37.64074 * 20 19 18 41 41 H 1.09001 * 109.08768 * 301.86359 * 21 20 19 42 42 H 1.08997 * 109.03469 * 182.84481 * 21 20 19 43 43 H 1.08998 * 109.53043 * 79.22266 * 22 15 14 44 44 H 1.08999 * 109.52904 * 199.45038 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 -0.8419 5 6 3.5419 1.4444 -0.1239 6 1 4.1471 1.8907 0.6513 7 6 4.1434 0.8761 -1.2268 8 7 3.4064 0.3330 -2.1709 9 14 6.0051 0.8778 -1.3799 10 1 6.5988 1.5446 -0.1933 11 1 6.4966 -0.5214 -1.4584 12 1 6.4000 1.6108 -2.6095 13 7 1.6514 2.0994 1.2551 14 6 2.4737 1.6172 2.3807 15 6 2.5420 3.0670 2.8782 16 6 2.3217 3.4055 1.3978 17 6 1.3293 3.4449 3.7516 18 6 1.5885 3.2027 5.2503 19 6 2.3286 1.9104 5.4757 20 6 3.8299 2.2164 5.5564 21 6 4.4753 2.3145 4.2510 22 6 3.8882 3.4769 3.4154 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8934 -0.5137 0.8900 28 1 3.8296 -0.0671 -2.9466 29 1 1.9373 0.9510 3.0563 30 1 3.4400 1.2178 2.0728 31 1 3.2474 3.4832 0.8276 32 1 1.6564 4.2545 1.2408 33 1 1.0990 4.4993 3.5990 34 1 0.4709 2.8492 3.4409 35 1 0.6343 3.1639 5.7758 36 1 2.1810 4.0272 5.6470 37 1 2.1377 1.2296 4.6462 38 1 1.9974 1.4534 6.4082 39 1 4.3169 1.4263 6.1280 40 1 3.9639 3.1609 6.0838 41 1 4.3308 1.3789 3.7108 42 1 5.5428 2.4820 4.3939 43 1 4.5579 3.7039 2.5859 44 1 3.7757 4.3586 4.0463 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000093965751.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:01 Heat of formation + Delta-G solvation = 3.845631 kcal Electronic energy + Delta-G solvation = -20438.963242 eV Core-core repulsion = 17776.941608 eV Total energy + Delta-G solvation = -2662.021634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.03464 -38.28364 -35.65420 -33.56146 -33.20684 -31.54428 -28.77384 -26.78736 -26.39002 -25.65157 -24.29709 -22.49751 -21.15011 -20.78512 -19.03783 -17.98263 -17.20191 -16.58043 -16.16134 -15.81987 -15.21662 -15.08706 -14.75683 -14.57110 -14.32392 -13.88299 -13.74193 -13.42411 -13.29909 -13.05656 -12.93883 -12.76364 -12.50826 -12.32646 -12.26627 -11.82085 -11.65656 -11.47041 -11.38229 -11.26105 -11.14339 -11.06093 -11.02857 -10.65158 -10.56662 -10.38609 -9.25137 -8.06774 -6.24808 1.35088 1.38455 1.47721 2.38988 3.14808 3.52088 3.57657 3.91876 4.02588 4.26398 4.32867 4.34729 4.47022 4.50327 4.55205 4.63856 4.68929 4.81971 4.85095 4.90215 4.95502 5.02722 5.05750 5.09364 5.12944 5.22716 5.24269 5.28407 5.32880 5.35575 5.39042 5.44007 5.51243 5.53133 5.58001 5.65552 5.66703 5.71937 5.82197 6.04787 6.13355 6.23711 6.46701 6.98134 7.44306 8.92558 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.021450 B = 0.008271 C = 0.006769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.018669 B = 3384.630666 C = 4135.518998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.102 4.102 3 C 0.187 3.813 4 H -0.004 1.004 5 C -0.544 4.544 6 H 0.067 0.933 7 C 0.018 3.982 8 N -0.914 5.914 9 Si 0.945 3.055 10 H -0.265 1.265 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.481 5.481 14 C 0.018 3.982 15 C -0.065 4.065 16 C 0.002 3.998 17 C -0.082 4.082 18 C -0.108 4.108 19 C -0.129 4.129 20 C -0.108 4.108 21 C -0.119 4.119 22 C -0.095 4.095 23 H 0.054 0.946 24 H 0.031 0.969 25 H 0.046 0.954 26 H 0.062 0.938 27 H 0.026 0.974 28 H 0.260 0.740 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.048 0.952 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.641 4.760 14.684 15.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.141 4.141 3 C 0.079 3.921 4 H 0.014 0.986 5 C -0.583 4.583 6 H 0.085 0.915 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.771 3.229 10 H -0.189 1.189 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.202 5.202 14 C -0.111 4.111 15 C -0.066 4.066 16 C -0.128 4.128 17 C -0.119 4.119 18 C -0.145 4.145 19 C -0.166 4.166 20 C -0.146 4.146 21 C -0.157 4.157 22 C -0.133 4.133 23 H 0.073 0.927 24 H 0.050 0.950 25 H 0.065 0.935 26 H 0.080 0.920 27 H 0.045 0.955 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.067 0.933 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.386 4.597 14.487 15.262 hybrid contribution 1.823 -0.295 -1.242 2.226 sum 0.438 4.302 13.245 13.933 Atomic orbital electron populations 1.21574 0.96518 0.99807 1.00476 1.21340 0.94313 0.98345 1.00057 1.19426 0.92600 0.91802 0.88303 0.98650 1.22021 0.93510 1.37256 1.05510 0.91487 1.25649 1.01779 0.95062 0.95630 1.70027 1.36241 1.39059 1.09976 0.85704 0.81477 0.77648 0.78076 1.18915 1.20870 1.21004 1.68989 1.43219 1.03661 1.04373 1.23953 0.97259 0.96475 0.93400 1.21686 0.96123 0.95489 0.93272 1.23954 0.98351 0.94185 0.96282 1.21595 0.95365 1.00740 0.94225 1.21325 1.00592 0.97824 0.94760 1.21404 0.95231 0.98159 1.01813 1.20344 0.95567 1.02015 0.96633 1.20608 0.99644 0.98505 0.96918 1.21274 0.94286 0.98694 0.99001 0.92693 0.94968 0.93458 0.91991 0.95523 0.93094 0.91481 0.91796 0.92188 0.91733 0.91959 0.92772 0.91519 0.91311 0.92296 0.91195 0.92238 0.91369 0.93306 0.91928 0.93547 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.30 9.80 71.98 0.71 -4.60 16 2 C -0.10 -5.03 5.28 30.60 0.16 -4.86 16 3 C 0.19 9.52 2.01 44.17 0.09 9.61 16 4 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 5 C -0.54 -28.98 6.22 25.60 0.16 -28.82 16 6 H 0.07 3.50 5.08 -2.91 -0.01 3.48 16 7 C 0.02 1.00 5.29 84.65 0.45 1.45 16 8 N -0.91 -52.72 11.29 21.45 0.24 -52.48 16 9 Si 0.94 43.32 29.54 68.60 2.03 45.35 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 13 N -0.48 -20.65 5.54 -906.89 -5.02 -25.67 16 14 C 0.02 0.67 3.64 83.57 0.30 0.98 16 15 C -0.07 -2.06 0.81 -52.26 -0.04 -2.10 16 16 C 0.00 0.06 6.53 83.58 0.55 0.61 16 17 C -0.08 -2.19 4.98 31.33 0.16 -2.04 16 18 C -0.11 -2.28 5.44 30.16 0.16 -2.12 16 19 C -0.13 -2.85 5.58 29.97 0.17 -2.68 16 20 C -0.11 -2.31 5.19 28.58 0.15 -2.16 16 21 C -0.12 -3.11 5.27 29.02 0.15 -2.96 16 22 C -0.09 -2.66 5.19 30.41 0.16 -2.51 16 23 H 0.05 2.19 7.75 -2.39 -0.02 2.17 16 24 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 26 H 0.06 3.43 5.94 -2.39 -0.01 3.42 16 27 H 0.03 1.28 7.55 -2.39 -0.02 1.26 16 28 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 29 H 0.07 2.47 5.93 -2.39 -0.01 2.45 16 30 H 0.06 2.79 4.46 -2.39 -0.01 2.78 16 31 H 0.06 2.65 5.52 -2.39 -0.01 2.64 16 32 H 0.06 2.39 8.09 -2.39 -0.02 2.37 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.05 1.63 7.72 -2.39 -0.02 1.61 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.07 1.30 6.89 -2.38 -0.02 1.29 16 37 H 0.06 1.58 4.51 -2.39 -0.01 1.57 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.07 1.27 7.34 -2.39 -0.02 1.25 16 41 H 0.05 1.49 5.78 -2.39 -0.01 1.48 16 42 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.05 1.46 7.61 -2.39 -0.02 1.44 16 44 H 0.08 1.87 7.48 -2.39 -0.02 1.86 16 Total: -1.00 -57.75 309.99 1.52 -56.23 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: 0.96 Total: 18.78 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 3.32 Total: -42.21 kcal Atomic # 7 Polarization: -73.37 SS G_CDS: -4.78 Total: -78.15 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -57.75 1.52 -56.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093965751.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.078 kcal (2) G-P(sol) polarization free energy of solvation -57.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds