Wall clock time and date at job start Mon Mar 30 2020 06:29:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46868 * 2 1 4 4 H 1.08996 * 109.47076 * 55.00326 * 3 2 1 5 5 C 1.52990 * 109.46991 * 295.00007 * 3 2 1 6 6 C 1.52999 * 109.47031 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47453 * 59.99816 * 6 5 3 8 8 C 1.53003 * 109.47138 * 300.00564 * 7 6 5 9 9 C 1.52999 * 109.47409 * 59.99409 * 8 7 6 10 10 H 1.09005 * 109.46843 * 60.00257 * 9 8 7 11 11 N 1.46901 * 109.47354 * 180.02562 * 9 8 7 12 12 C 1.46902 * 110.99693 * 58.95524 * 11 9 8 13 13 C 1.50705 * 109.46562 * 160.99518 * 12 11 9 14 14 H 1.07988 * 120.00166 * 354.08735 * 13 12 11 15 15 C 1.37877 * 119.99524 * 174.08648 * 13 12 11 16 16 N 1.31514 * 120.00415 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99998 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46951 * 90.00004 * 17 15 13 19 19 H 1.48498 * 109.47252 * 210.00214 * 17 15 13 20 20 H 1.48504 * 109.46879 * 330.00348 * 17 15 13 21 21 C 1.46899 * 110.99745 * 295.00366 * 11 9 8 22 22 C 1.53007 * 117.49466 * 261.66737 * 21 11 9 23 23 C 1.52997 * 59.99838 * 252.51193 * 22 21 11 24 24 H 1.09004 * 109.47170 * 299.99898 * 1 2 3 25 25 H 1.08993 * 109.47314 * 59.99985 * 1 2 3 26 26 H 1.09003 * 109.47296 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46646 * 239.99900 * 2 1 3 28 28 H 1.09005 * 109.46965 * 120.00168 * 2 1 3 29 29 H 1.09005 * 109.47272 * 300.00048 * 5 3 2 30 30 H 1.08998 * 109.47614 * 60.00438 * 5 3 2 31 31 H 1.08997 * 109.47575 * 180.02562 * 6 5 3 32 32 H 1.09004 * 109.47354 * 300.00082 * 6 5 3 33 33 H 1.09005 * 109.46980 * 60.00225 * 7 6 5 34 34 H 1.08994 * 109.47402 * 180.02562 * 7 6 5 35 35 H 1.09005 * 109.47310 * 179.97438 * 8 7 6 36 36 H 1.09005 * 109.46908 * 299.99705 * 8 7 6 37 37 H 1.09001 * 109.46918 * 280.99022 * 12 11 9 38 38 H 1.08997 * 109.47007 * 40.99564 * 12 11 9 39 39 H 0.96993 * 120.00455 * 179.97438 * 16 15 13 40 40 H 1.09001 * 115.55490 * 47.37660 * 21 11 9 41 41 H 1.08997 * 117.50140 * 0.02562 * 22 21 11 42 42 H 1.09004 * 117.49167 * 145.02135 * 22 21 11 43 43 H 1.08997 * 117.50133 * 252.51129 * 23 22 21 44 44 H 1.09000 * 117.49852 * 107.49406 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 2.1457 3.5688 -1.3076 7 6 3.6705 3.5702 -1.1821 8 6 4.0753 2.8861 0.1252 9 6 3.5648 1.4438 0.1255 10 1 3.9992 0.9046 -0.7164 11 7 3.9530 0.7872 1.3810 12 6 3.4044 1.5028 2.5407 13 6 3.4084 0.5915 3.7410 14 1 3.6907 -0.4450 3.6311 15 6 3.0517 1.0812 4.9795 16 7 2.7074 2.3434 5.1133 17 14 3.0559 -0.0484 6.4672 18 1 4.3925 -0.0112 7.1131 19 1 2.0254 0.4047 7.4357 20 1 2.7532 -1.4366 6.0355 21 6 5.4134 0.6639 1.4809 22 6 6.0368 -0.6795 1.0966 23 6 5.9718 -0.2588 2.5661 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0698 1.5875 -2.1491 30 1 0.5489 2.1253 -1.3969 31 1 1.8569 4.0563 -2.2387 32 1 1.7114 4.1082 -0.4657 33 1 4.1048 3.0310 -2.0240 34 1 4.0341 4.5978 -1.1818 35 1 5.1617 2.8867 0.2144 36 1 3.6410 3.4254 0.9671 37 1 4.0164 2.3804 2.7489 38 1 2.3827 1.8150 2.3250 39 1 2.4561 2.6879 5.9845 40 1 5.9785 1.5664 1.2479 41 1 5.3635 -1.4716 0.7692 42 1 7.0123 -0.6608 0.6104 43 1 6.9044 0.0366 3.0469 44 1 5.2556 -0.7742 3.2060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111744029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:10 Heat of formation + Delta-G solvation = 6.064695 kcal Electronic energy + Delta-G solvation = -20159.068032 eV Core-core repulsion = 17497.142624 eV Total energy + Delta-G solvation = -2661.925408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -39.33219 -36.63840 -33.52562 -33.30335 -32.24723 -29.04998 -28.20844 -26.19917 -23.45939 -22.55522 -21.84837 -21.40616 -20.29084 -19.50183 -18.44914 -16.65955 -15.36953 -14.80057 -14.41050 -14.33291 -14.21325 -13.71002 -13.38362 -13.21002 -12.89702 -12.55099 -12.11430 -12.09436 -11.79196 -11.51542 -11.12040 -10.99883 -10.96803 -10.77040 -10.68465 -10.64740 -10.55925 -10.35749 -9.85223 -9.79695 -9.68546 -9.60694 -9.42823 -9.00825 -8.93876 -8.31059 -7.10955 -5.95511 -3.94270 3.33977 3.40717 3.44051 4.45841 4.66000 4.78817 5.04239 5.13263 5.29412 5.39585 5.49231 5.57360 5.69439 5.71738 5.76980 5.83997 5.89426 5.90201 5.96707 6.01120 6.03655 6.15866 6.21773 6.25411 6.34222 6.34866 6.40477 6.48580 6.51551 6.56215 6.64167 6.73062 6.76354 6.82895 7.03381 7.08843 7.12338 7.38131 7.51073 7.93143 8.22527 8.32675 8.65939 9.12208 9.67812 11.14915 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.007861 C = 0.007042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.136763 B = 3561.217243 C = 3975.225352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.079 4.079 4 H 0.079 0.921 5 C -0.112 4.112 6 C -0.119 4.119 7 C -0.112 4.112 8 C -0.153 4.153 9 C 0.098 3.902 10 H 0.064 0.936 11 N -0.502 5.502 12 C 0.193 3.807 13 C -0.495 4.495 14 H 0.066 0.934 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.889 3.111 18 H -0.282 1.282 19 H -0.289 1.289 20 H -0.274 1.274 21 C 0.025 3.975 22 C -0.187 4.187 23 C -0.157 4.157 24 H 0.053 0.947 25 H 0.045 0.955 26 H 0.045 0.955 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.069 0.931 37 H -0.004 1.004 38 H 0.032 0.968 39 H 0.259 0.741 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.678 -0.802 -11.835 11.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.097 4.097 4 H 0.097 0.903 5 C -0.150 4.150 6 C -0.157 4.157 7 C -0.150 4.150 8 C -0.192 4.192 9 C -0.011 4.011 10 H 0.082 0.918 11 N -0.224 5.224 12 C 0.068 3.932 13 C -0.534 4.534 14 H 0.084 0.916 15 C -0.147 4.147 16 N -0.541 5.541 17 Si 0.718 3.282 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.199 1.199 21 C -0.084 4.084 22 C -0.225 4.225 23 C -0.194 4.194 24 H 0.072 0.928 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.065 0.935 28 H 0.104 0.896 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.088 0.912 37 H 0.014 0.986 38 H 0.050 0.950 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 0.407 -1.161 -11.679 11.744 hybrid contribution 0.402 0.471 0.954 1.138 sum 0.810 -0.690 -10.725 10.778 Atomic orbital electron populations 1.21822 0.97178 1.00658 1.01161 1.21419 0.94261 0.96440 1.02579 1.21227 0.94820 0.96464 0.97224 0.90297 1.21624 1.00161 0.95271 0.97973 1.21535 0.95909 0.97202 1.01026 1.21452 0.95844 0.99742 0.97949 1.22255 1.00547 0.98600 0.97835 1.21563 0.94700 0.91354 0.93471 0.91783 1.62122 1.06474 1.51470 1.02384 1.19761 0.94540 0.92634 0.86253 1.21264 1.43747 0.96606 0.91734 0.91610 1.24953 0.95931 0.94971 0.98814 1.69949 1.46778 1.13491 1.23851 0.86632 0.77583 0.81134 0.82884 1.20866 1.21452 1.19861 1.22068 0.89722 0.92026 1.04572 1.22988 1.00589 0.99363 0.99534 1.23112 1.01677 1.03332 0.91272 0.92768 0.93574 0.93602 0.93459 0.89645 0.92614 0.92129 0.92821 0.92049 0.92628 0.92882 0.92601 0.91211 0.98641 0.95034 0.93170 0.91322 0.89108 0.90507 0.90439 0.86449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.67 37.16 0.36 -1.85 16 2 C -0.11 -1.79 5.32 -26.73 -0.14 -1.94 16 3 C -0.08 -1.32 1.44 -90.62 -0.13 -1.45 16 4 H 0.08 1.55 6.08 -51.93 -0.32 1.23 16 5 C -0.11 -1.55 4.96 -26.74 -0.13 -1.68 16 6 C -0.12 -1.59 5.92 -26.73 -0.16 -1.75 16 7 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 8 C -0.15 -2.59 4.63 -26.73 -0.12 -2.72 16 9 C 0.10 1.73 1.68 -67.71 -0.11 1.62 16 10 H 0.06 1.10 8.13 -51.93 -0.42 0.67 16 11 N -0.50 -10.34 3.71 -220.14 -0.82 -11.16 16 12 C 0.19 4.79 3.56 -4.97 -0.02 4.78 16 13 C -0.49 -13.36 7.80 -34.44 -0.27 -13.63 16 14 H 0.07 1.76 5.66 -52.49 -0.30 1.47 16 15 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 16 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 17 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 20 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 21 C 0.03 0.49 4.66 -67.71 -0.32 0.18 16 22 C -0.19 -3.15 10.46 -26.73 -0.28 -3.43 16 23 C -0.16 -3.03 9.43 -26.73 -0.25 -3.28 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 25 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.08 1.66 7.45 -51.93 -0.39 1.27 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.79 6.57 -51.93 -0.34 0.44 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.95 6.43 -51.93 -0.33 0.61 16 36 H 0.07 1.36 6.83 -51.93 -0.35 1.01 16 37 H 0.00 -0.12 7.29 -51.93 -0.38 -0.50 16 38 H 0.03 0.84 5.60 -51.93 -0.29 0.55 16 39 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 40 H 0.07 1.33 6.44 -51.93 -0.33 0.99 16 41 H 0.09 1.55 8.14 -51.93 -0.42 1.12 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.12 2.54 5.36 -51.93 -0.28 2.26 16 LS Contribution 325.04 15.07 4.90 4.90 Total: -1.00 -27.69 325.04 -9.89 -37.58 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.86 Total: 3.34 kcal Atomic # 6 Polarization: -23.62 SS G_CDS: -1.83 Total: -25.45 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: -0.08 Total: -36.87 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.69 -9.89 -37.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111744029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.646 kcal (2) G-P(sol) polarization free energy of solvation -27.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds