Wall clock time and date at job start Mon Mar 30 2020 06:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46868 * 2 1 4 4 H 1.08996 * 109.47076 * 55.00326 * 3 2 1 5 5 C 1.52990 * 109.46991 * 295.00007 * 3 2 1 6 6 C 1.52999 * 109.47031 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47453 * 59.99816 * 6 5 3 8 8 C 1.53003 * 109.47138 * 300.00564 * 7 6 5 9 9 C 1.52999 * 109.47409 * 59.99409 * 8 7 6 10 10 H 1.09005 * 109.46843 * 60.00257 * 9 8 7 11 11 N 1.46901 * 109.47354 * 180.02562 * 9 8 7 12 12 C 1.46902 * 110.99693 * 58.95524 * 11 9 8 13 13 C 1.50705 * 109.46562 * 160.99518 * 12 11 9 14 14 H 1.07988 * 120.00166 * 354.08735 * 13 12 11 15 15 C 1.37877 * 119.99524 * 174.08648 * 13 12 11 16 16 N 1.31514 * 120.00415 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 119.99998 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46951 * 90.00004 * 17 15 13 19 19 H 1.48498 * 109.47252 * 210.00214 * 17 15 13 20 20 H 1.48504 * 109.46879 * 330.00348 * 17 15 13 21 21 C 1.46899 * 110.99745 * 295.00366 * 11 9 8 22 22 C 1.53007 * 117.49466 * 261.66737 * 21 11 9 23 23 C 1.52997 * 59.99838 * 252.51193 * 22 21 11 24 24 H 1.09004 * 109.47170 * 299.99898 * 1 2 3 25 25 H 1.08993 * 109.47314 * 59.99985 * 1 2 3 26 26 H 1.09003 * 109.47296 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.46646 * 239.99900 * 2 1 3 28 28 H 1.09005 * 109.46965 * 120.00168 * 2 1 3 29 29 H 1.09005 * 109.47272 * 300.00048 * 5 3 2 30 30 H 1.08998 * 109.47614 * 60.00438 * 5 3 2 31 31 H 1.08997 * 109.47575 * 180.02562 * 6 5 3 32 32 H 1.09004 * 109.47354 * 300.00082 * 6 5 3 33 33 H 1.09005 * 109.46980 * 60.00225 * 7 6 5 34 34 H 1.08994 * 109.47402 * 180.02562 * 7 6 5 35 35 H 1.09005 * 109.47310 * 179.97438 * 8 7 6 36 36 H 1.09005 * 109.46908 * 299.99705 * 8 7 6 37 37 H 1.09001 * 109.46918 * 280.99022 * 12 11 9 38 38 H 1.08997 * 109.47007 * 40.99564 * 12 11 9 39 39 H 0.96993 * 120.00455 * 179.97438 * 16 15 13 40 40 H 1.09001 * 115.55490 * 47.37660 * 21 11 9 41 41 H 1.08997 * 117.50140 * 0.02562 * 22 21 11 42 42 H 1.09004 * 117.49167 * 145.02135 * 22 21 11 43 43 H 1.08997 * 117.50133 * 252.51129 * 23 22 21 44 44 H 1.09000 * 117.49852 * 107.49406 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3073 6 6 2.1457 3.5688 -1.3076 7 6 3.6705 3.5702 -1.1821 8 6 4.0753 2.8861 0.1252 9 6 3.5648 1.4438 0.1255 10 1 3.9992 0.9046 -0.7164 11 7 3.9530 0.7872 1.3810 12 6 3.4044 1.5028 2.5407 13 6 3.4084 0.5915 3.7410 14 1 3.6907 -0.4450 3.6311 15 6 3.0517 1.0812 4.9795 16 7 2.7074 2.3434 5.1133 17 14 3.0559 -0.0484 6.4672 18 1 4.3925 -0.0112 7.1131 19 1 2.0254 0.4047 7.4357 20 1 2.7532 -1.4366 6.0355 21 6 5.4134 0.6639 1.4809 22 6 6.0368 -0.6795 1.0966 23 6 5.9718 -0.2588 2.5661 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 2.0698 1.5875 -2.1491 30 1 0.5489 2.1253 -1.3969 31 1 1.8569 4.0563 -2.2387 32 1 1.7114 4.1082 -0.4657 33 1 4.1048 3.0310 -2.0240 34 1 4.0341 4.5978 -1.1818 35 1 5.1617 2.8867 0.2144 36 1 3.6410 3.4254 0.9671 37 1 4.0164 2.3804 2.7489 38 1 2.3827 1.8150 2.3250 39 1 2.4561 2.6879 5.9845 40 1 5.9785 1.5664 1.2479 41 1 5.3635 -1.4716 0.7692 42 1 7.0123 -0.6608 0.6104 43 1 6.9044 0.0366 3.0469 44 1 5.2556 -0.7742 3.2060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111744029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:08 Heat of formation + Delta-G solvation = -7.984285 kcal Electronic energy + Delta-G solvation = -20159.677242 eV Core-core repulsion = 17497.142624 eV Total energy + Delta-G solvation = -2662.534618 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.79 seconds Orbital eigenvalues (eV) -40.76557 -38.09119 -35.19068 -34.70993 -34.06863 -30.50343 -29.69890 -27.96541 -24.77767 -24.46539 -23.23487 -22.87285 -21.54029 -20.90574 -20.00546 -18.62558 -16.93080 -16.63844 -16.00163 -15.79493 -15.58206 -14.98414 -14.94521 -14.59976 -14.20767 -14.09139 -13.85360 -13.62637 -13.25994 -13.13505 -12.81749 -12.63983 -12.40864 -12.31872 -12.19686 -12.02850 -11.91787 -11.62334 -11.54044 -11.28254 -11.19734 -11.05929 -10.99616 -10.67904 -10.55341 -10.41897 -8.81727 -8.11752 -6.17912 1.39599 1.40107 1.50885 2.42493 3.10849 3.19841 3.29778 3.76010 3.91004 4.07419 4.20918 4.25229 4.28182 4.36259 4.47184 4.50039 4.58320 4.63256 4.64215 4.67412 4.82306 4.90991 4.91391 4.92734 4.96889 5.11462 5.18438 5.19202 5.22823 5.26653 5.29987 5.38320 5.39122 5.43325 5.50012 5.51468 5.54512 5.73086 5.75911 5.82394 6.20695 6.54384 6.80025 6.98778 7.49055 8.98260 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.018415 B = 0.007861 C = 0.007042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.136763 B = 3561.217243 C = 3975.225352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.105 4.105 3 C -0.076 4.076 4 H 0.037 0.963 5 C -0.105 4.105 6 C -0.119 4.119 7 C -0.105 4.105 8 C -0.148 4.148 9 C 0.097 3.903 10 H 0.083 0.917 11 N -0.503 5.503 12 C 0.218 3.782 13 C -0.500 4.500 14 H 0.067 0.933 15 C -0.001 4.001 16 N -0.938 5.938 17 Si 0.955 3.045 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.265 1.265 21 C 0.001 3.999 22 C -0.145 4.145 23 C -0.174 4.174 24 H 0.031 0.969 25 H 0.069 0.931 26 H 0.057 0.943 27 H 0.068 0.932 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.040 0.960 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.029 0.971 37 H -0.044 1.044 38 H 0.007 0.993 39 H 0.259 0.741 40 H 0.069 0.931 41 H 0.092 0.908 42 H 0.111 0.889 43 H 0.089 0.911 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.200 -2.071 -14.174 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.143 4.143 3 C -0.095 4.095 4 H 0.055 0.945 5 C -0.143 4.143 6 C -0.156 4.156 7 C -0.143 4.143 8 C -0.187 4.187 9 C -0.012 4.012 10 H 0.101 0.899 11 N -0.226 5.226 12 C 0.092 3.908 13 C -0.538 4.538 14 H 0.085 0.915 15 C -0.197 4.197 16 N -0.580 5.580 17 Si 0.780 3.220 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.189 1.189 21 C -0.109 4.109 22 C -0.183 4.183 23 C -0.211 4.211 24 H 0.050 0.950 25 H 0.088 0.912 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.059 0.941 33 H 0.096 0.904 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.048 0.952 37 H -0.026 1.026 38 H 0.025 0.975 39 H 0.068 0.932 40 H 0.087 0.913 41 H 0.111 0.889 42 H 0.129 0.871 43 H 0.107 0.893 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.937 -2.445 -14.036 14.278 hybrid contribution 0.268 0.871 1.654 1.888 sum 1.205 -1.573 -12.382 12.540 Atomic orbital electron populations 1.21777 0.95824 1.01512 1.01211 1.21340 0.95493 0.95795 1.01632 1.21175 0.93954 0.96694 0.97693 0.94469 1.21584 1.01060 0.95261 0.96375 1.21547 0.95346 0.97034 1.01684 1.21432 0.96380 1.00173 0.96356 1.22160 0.99923 0.98131 0.98461 1.21695 0.95509 0.91667 0.92285 0.89913 1.62060 1.07497 1.50973 1.02072 1.19276 0.92664 0.91104 0.87722 1.21591 1.42774 0.96832 0.92619 0.91537 1.25790 0.95726 0.96329 1.01888 1.70094 1.48086 1.15348 1.24470 0.85596 0.77719 0.79420 0.79215 1.20123 1.21272 1.18945 1.22210 0.88955 0.93513 1.06176 1.23013 1.01550 0.96737 0.97004 1.23047 1.01634 1.03968 0.92485 0.94994 0.91204 0.92357 0.91357 0.93431 0.90463 0.90993 0.89806 0.94122 0.90428 0.91941 0.92953 0.95239 1.02588 0.97489 0.93232 0.91344 0.88911 0.87101 0.89280 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.14 9.67 71.98 0.70 -3.44 16 2 C -0.10 -3.38 5.32 30.60 0.16 -3.22 16 3 C -0.08 -2.56 1.44 -10.79 -0.02 -2.58 16 4 H 0.04 1.56 6.08 -2.39 -0.01 1.54 16 5 C -0.11 -2.65 4.96 30.59 0.15 -2.50 16 6 C -0.12 -2.94 5.92 30.59 0.18 -2.76 16 7 C -0.11 -2.72 5.92 30.59 0.18 -2.54 16 8 C -0.15 -5.08 4.63 30.59 0.14 -4.94 16 9 C 0.10 3.41 1.68 44.92 0.08 3.49 16 10 H 0.08 2.64 8.13 -2.38 -0.02 2.62 16 11 N -0.50 -21.34 3.71 -850.38 -3.16 -24.50 16 12 C 0.22 11.55 3.56 85.56 0.30 11.86 16 13 C -0.50 -28.12 7.80 25.60 0.20 -27.92 16 14 H 0.07 3.68 5.66 -2.92 -0.02 3.66 16 15 C 0.00 -0.03 5.46 84.65 0.46 0.43 16 16 N -0.94 -57.56 13.29 21.45 0.28 -57.27 16 17 Si 0.95 45.21 29.54 68.60 2.03 47.24 16 18 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 19 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 20 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 21 C 0.00 0.02 4.66 44.92 0.21 0.23 16 22 C -0.15 -4.56 10.46 30.60 0.32 -4.24 16 23 C -0.17 -6.67 9.43 30.59 0.29 -6.39 16 24 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.07 1.64 6.56 -2.39 -0.02 1.62 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.05 1.88 7.45 -2.38 -0.02 1.87 16 29 H 0.08 1.67 8.14 -2.38 -0.02 1.66 16 30 H 0.07 1.67 6.57 -2.39 -0.02 1.66 16 31 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 33 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 34 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.05 1.80 6.43 -2.38 -0.02 1.78 16 36 H 0.03 1.23 6.83 -2.38 -0.02 1.21 16 37 H -0.04 -2.61 7.29 -2.39 -0.02 -2.63 16 38 H 0.01 0.41 5.60 -2.39 -0.01 0.40 16 39 H 0.26 15.10 8.31 -92.71 -0.77 14.32 16 40 H 0.07 2.66 6.44 -2.39 -0.02 2.64 16 41 H 0.09 2.91 8.14 -2.39 -0.02 2.89 16 42 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 43 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 44 H 0.09 3.96 5.36 -2.39 -0.01 3.95 16 Total: -1.00 -63.22 325.04 3.46 -59.76 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: 0.95 Total: 19.32 kcal Atomic # 6 Polarization: -47.90 SS G_CDS: 3.36 Total: -44.54 kcal Atomic # 7 Polarization: -78.90 SS G_CDS: -2.87 Total: -81.77 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -63.22 3.46 -59.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111744029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.774 kcal (2) G-P(sol) polarization free energy of solvation -63.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds