Wall clock time and date at job start Mon Mar 30 2020 06:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46620 * 2 1 4 4 H 1.08998 * 109.47138 * 305.68442 * 3 2 1 5 5 C 1.52998 * 109.46920 * 65.68869 * 3 2 1 6 6 C 1.53002 * 109.47419 * 59.99817 * 5 3 2 7 7 C 1.53001 * 109.47118 * 59.99657 * 6 5 3 8 8 C 1.52998 * 109.47255 * 300.00443 * 7 6 5 9 9 C 1.53001 * 109.46796 * 185.68709 * 3 2 1 10 10 H 1.08997 * 109.46918 * 180.02562 * 9 3 2 11 11 N 1.46905 * 109.47148 * 59.99873 * 9 3 2 12 12 C 1.46905 * 110.99895 * 185.62582 * 11 9 3 13 13 C 1.50693 * 109.47103 * 299.59862 * 12 11 9 14 14 H 1.07994 * 120.00496 * 4.77041 * 13 12 11 15 15 C 1.37878 * 119.99938 * 184.76636 * 13 12 11 16 16 N 1.31514 * 119.99930 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00350 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47360 * 59.99783 * 17 15 13 19 19 H 1.48497 * 109.47249 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47010 * 300.00202 * 17 15 13 21 21 C 1.46901 * 110.99654 * 61.67512 * 11 9 3 22 22 C 1.53002 * 117.49905 * 254.05951 * 21 11 9 23 23 C 1.53000 * 117.49469 * 185.39817 * 21 11 9 24 24 H 1.08998 * 109.47537 * 300.00020 * 1 2 3 25 25 H 1.09005 * 109.47370 * 60.00453 * 1 2 3 26 26 H 1.09007 * 109.46769 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47377 * 240.00297 * 2 1 3 28 28 H 1.08996 * 109.47513 * 119.99785 * 2 1 3 29 29 H 1.08998 * 109.46488 * 179.97438 * 5 3 2 30 30 H 1.08999 * 109.47105 * 299.99743 * 5 3 2 31 31 H 1.08995 * 109.47392 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.46827 * 300.00090 * 6 5 3 33 33 H 1.09003 * 109.47496 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.46940 * 59.99933 * 7 6 5 35 35 H 1.09007 * 109.47232 * 299.99882 * 8 7 6 36 36 H 1.09006 * 109.47446 * 180.02562 * 8 7 6 37 37 H 1.09003 * 109.46777 * 59.60021 * 12 11 9 38 38 H 1.08993 * 109.46641 * 179.59420 * 12 11 9 39 39 H 0.97004 * 120.00162 * 180.02562 * 16 15 13 40 40 H 1.09002 * 115.54994 * 39.73053 * 21 11 9 41 41 H 1.08998 * 117.49305 * 0.02562 * 22 21 11 42 42 H 1.08999 * 117.49842 * 145.02076 * 22 21 11 43 43 H 1.08998 * 117.49507 * 214.97510 * 23 21 11 44 44 H 1.08998 * 117.50334 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5958 1.9850 -0.8347 5 6 1.6499 2.1213 1.3146 6 6 2.2733 1.3600 2.4862 7 6 3.7966 1.3624 2.3433 8 6 4.1866 0.6837 1.0287 9 6 3.5632 1.4450 -0.1429 10 1 3.9265 2.4727 -0.1425 11 7 3.9376 0.7933 -1.4051 12 6 5.3963 0.6575 -1.5150 13 6 6.0320 2.0233 -1.4787 14 1 5.4228 2.8981 -1.3063 15 6 7.3916 2.1560 -1.6654 16 7 8.1335 1.0906 -1.8758 17 14 8.1799 3.8489 -1.6197 18 1 7.9375 4.4722 -0.2939 19 1 9.6418 3.7205 -1.8470 20 1 7.5871 4.6998 -2.6826 21 6 3.3884 1.5214 -2.5567 22 6 2.1981 0.8953 -3.2861 23 6 3.5813 0.9011 -3.9420 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0136 3.1489 1.3147 30 1 0.5647 2.1196 1.4164 31 1 1.9959 1.8438 3.4227 32 1 1.9100 0.3324 2.4862 33 1 4.2408 0.8205 3.1782 34 1 4.1599 2.3901 2.3432 35 1 3.8233 -0.3440 1.0286 36 1 5.2719 0.6850 0.9270 37 1 5.7693 0.0607 -0.6826 38 1 5.6455 0.1655 -2.4551 39 1 9.0902 1.1839 -2.0068 40 1 3.4186 2.6086 -2.4834 41 1 1.8223 -0.0567 -2.9112 42 1 1.4454 1.5706 -3.6930 43 1 3.7378 1.5802 -4.7801 44 1 4.1160 -0.0470 -3.9989 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111744031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:15 Heat of formation + Delta-G solvation = 4.335124 kcal Electronic energy + Delta-G solvation = -20320.965123 eV Core-core repulsion = 17658.964715 eV Total energy + Delta-G solvation = -2662.000408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -39.43584 -36.71726 -33.86878 -32.71538 -32.05716 -29.08906 -28.49228 -25.93494 -23.41051 -22.90346 -21.78286 -21.47762 -20.72779 -19.17000 -17.82441 -16.22893 -15.78924 -15.24617 -14.68134 -14.28823 -14.15261 -13.95835 -13.37064 -12.94037 -12.60159 -12.48605 -12.20426 -12.03063 -11.70927 -11.54236 -11.25874 -11.00585 -10.91438 -10.88775 -10.65987 -10.60778 -10.31996 -10.17206 -10.04977 -9.87686 -9.76326 -9.62019 -9.36666 -9.28802 -8.89103 -8.36745 -7.12101 -5.98145 -4.06038 3.29514 3.34746 3.37066 4.43190 4.61425 4.80132 5.11047 5.18339 5.32982 5.33766 5.52826 5.57306 5.65392 5.70789 5.73123 5.82951 5.89315 5.99812 6.04315 6.06740 6.10853 6.19008 6.20827 6.23749 6.32215 6.39672 6.44545 6.53197 6.55895 6.59795 6.63271 6.73541 6.83431 6.91725 6.97608 7.09707 7.12117 7.38163 7.60063 7.95669 8.14509 8.35765 8.42417 9.03833 9.59921 11.06671 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.008222 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.104873 B = 3404.569937 C = 4212.378297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.113 4.113 3 C -0.077 4.077 4 H 0.063 0.937 5 C -0.114 4.114 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.112 4.112 9 C 0.106 3.894 10 H 0.042 0.958 11 N -0.509 5.509 12 C 0.187 3.813 13 C -0.539 4.539 14 H 0.053 0.947 15 C 0.065 3.935 16 N -0.892 5.892 17 Si 0.884 3.116 18 H -0.278 1.278 19 H -0.287 1.287 20 H -0.279 1.279 21 C 0.047 3.953 22 C -0.185 4.185 23 C -0.168 4.168 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.044 0.956 27 H 0.077 0.923 28 H 0.059 0.941 29 H 0.054 0.946 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.057 0.943 35 H 0.060 0.940 36 H 0.077 0.923 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.261 0.739 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.633 -0.504 4.302 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.096 4.096 4 H 0.082 0.918 5 C -0.152 4.152 6 C -0.155 4.155 7 C -0.154 4.154 8 C -0.149 4.149 9 C -0.003 4.003 10 H 0.060 0.940 11 N -0.232 5.232 12 C 0.062 3.938 13 C -0.578 4.578 14 H 0.071 0.929 15 C -0.137 4.137 16 N -0.531 5.531 17 Si 0.712 3.288 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.204 1.204 21 C -0.063 4.063 22 C -0.223 4.223 23 C -0.206 4.206 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.096 0.904 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.110 0.890 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.628 -1.051 4.266 13.370 hybrid contribution 1.036 1.927 -0.067 2.189 sum -11.592 0.876 4.199 12.360 Atomic orbital electron populations 1.21845 0.97490 1.00506 1.01025 1.21553 0.93715 0.96918 1.02805 1.21148 0.96055 0.96165 0.96242 0.91828 1.21576 0.99416 0.99011 0.95187 1.21563 0.96166 1.00481 0.97324 1.21510 0.95119 1.00906 0.97889 1.21599 1.01897 0.98804 0.92610 1.21313 0.92453 0.96692 0.89858 0.94031 1.62305 1.14875 1.46988 0.99074 1.19794 0.80297 0.95868 0.97805 1.21678 0.92900 0.93984 1.49285 0.92908 1.24923 0.97422 0.96177 0.95156 1.69926 1.05913 1.28295 1.48976 0.86787 0.78332 0.85177 0.78485 1.20368 1.21279 1.20433 1.21949 0.99357 0.94631 0.90346 1.23097 0.91266 1.02707 1.05239 1.22826 0.98902 1.02927 0.95939 0.93344 0.93309 0.93691 0.90491 0.92239 0.92678 0.92507 0.93155 0.91895 0.92709 0.92423 0.92149 0.90433 0.94933 0.94892 0.92895 0.90838 0.88989 0.90360 0.89950 0.88823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.68 37.16 0.36 -1.46 16 2 C -0.11 -1.61 4.61 -26.73 -0.12 -1.74 16 3 C -0.08 -1.19 1.90 -90.62 -0.17 -1.36 16 4 H 0.06 1.02 6.92 -51.93 -0.36 0.66 16 5 C -0.11 -1.55 5.22 -26.73 -0.14 -1.69 16 6 C -0.12 -1.55 5.65 -26.73 -0.15 -1.70 16 7 C -0.12 -1.77 5.92 -26.73 -0.16 -1.93 16 8 C -0.11 -2.02 4.51 -26.73 -0.12 -2.14 16 9 C 0.11 1.98 1.21 -67.71 -0.08 1.89 16 10 H 0.04 0.89 6.60 -51.93 -0.34 0.55 16 11 N -0.51 -10.44 3.85 -220.14 -0.85 -11.29 16 12 C 0.19 4.67 4.51 -4.98 -0.02 4.65 16 13 C -0.54 -14.52 7.86 -34.44 -0.27 -14.79 16 14 H 0.05 1.43 6.26 -52.49 -0.33 1.10 16 15 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 16 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 17 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 C 0.05 0.91 3.19 -67.71 -0.22 0.69 16 22 C -0.19 -2.97 9.87 -26.69 -0.26 -3.24 16 23 C -0.17 -3.08 9.78 -26.69 -0.26 -3.34 16 24 H 0.05 0.54 6.59 -51.93 -0.34 0.20 16 25 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.24 6.11 -51.93 -0.32 0.92 16 28 H 0.06 0.86 4.83 -51.93 -0.25 0.61 16 29 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.69 6.59 -51.93 -0.34 0.35 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.81 6.31 -51.93 -0.33 0.48 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 35 H 0.06 1.06 6.56 -51.93 -0.34 0.72 16 36 H 0.08 1.65 6.30 -51.93 -0.33 1.33 16 37 H 0.03 0.87 6.19 -51.93 -0.32 0.55 16 38 H 0.03 0.90 7.10 -51.93 -0.37 0.53 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.07 1.52 7.97 -51.93 -0.41 1.11 16 41 H 0.09 1.46 6.96 -51.93 -0.36 1.10 16 42 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.09 1.81 7.59 -51.93 -0.39 1.42 16 LS Contribution 319.69 15.07 4.82 4.82 Total: -1.00 -27.35 319.69 -9.69 -37.03 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.65 Total: 2.69 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -1.72 Total: -24.42 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: -0.11 Total: -36.59 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -27.35 -9.69 -37.03 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111744031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.368 kcal (2) G-P(sol) polarization free energy of solvation -27.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds