Wall clock time and date at job start Mon Mar 30 2020 06:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53009 * 109.46620 * 2 1 4 4 H 1.08998 * 109.47138 * 305.68442 * 3 2 1 5 5 C 1.52998 * 109.46920 * 65.68869 * 3 2 1 6 6 C 1.53002 * 109.47419 * 59.99817 * 5 3 2 7 7 C 1.53001 * 109.47118 * 59.99657 * 6 5 3 8 8 C 1.52998 * 109.47255 * 300.00443 * 7 6 5 9 9 C 1.53001 * 109.46796 * 185.68709 * 3 2 1 10 10 H 1.08997 * 109.46918 * 180.02562 * 9 3 2 11 11 N 1.46905 * 109.47148 * 59.99873 * 9 3 2 12 12 C 1.46905 * 110.99895 * 185.62582 * 11 9 3 13 13 C 1.50693 * 109.47103 * 299.59862 * 12 11 9 14 14 H 1.07994 * 120.00496 * 4.77041 * 13 12 11 15 15 C 1.37878 * 119.99938 * 184.76636 * 13 12 11 16 16 N 1.31514 * 119.99930 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00350 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47360 * 59.99783 * 17 15 13 19 19 H 1.48497 * 109.47249 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.47010 * 300.00202 * 17 15 13 21 21 C 1.46901 * 110.99654 * 61.67512 * 11 9 3 22 22 C 1.53002 * 117.49905 * 254.05951 * 21 11 9 23 23 C 1.53000 * 117.49469 * 185.39817 * 21 11 9 24 24 H 1.08998 * 109.47537 * 300.00020 * 1 2 3 25 25 H 1.09005 * 109.47370 * 60.00453 * 1 2 3 26 26 H 1.09007 * 109.46769 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47377 * 240.00297 * 2 1 3 28 28 H 1.08996 * 109.47513 * 119.99785 * 2 1 3 29 29 H 1.08998 * 109.46488 * 179.97438 * 5 3 2 30 30 H 1.08999 * 109.47105 * 299.99743 * 5 3 2 31 31 H 1.08995 * 109.47392 * 179.97438 * 6 5 3 32 32 H 1.08997 * 109.46827 * 300.00090 * 6 5 3 33 33 H 1.09003 * 109.47496 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.46940 * 59.99933 * 7 6 5 35 35 H 1.09007 * 109.47232 * 299.99882 * 8 7 6 36 36 H 1.09006 * 109.47446 * 180.02562 * 8 7 6 37 37 H 1.09003 * 109.46777 * 59.60021 * 12 11 9 38 38 H 1.08993 * 109.46641 * 179.59420 * 12 11 9 39 39 H 0.97004 * 120.00162 * 180.02562 * 16 15 13 40 40 H 1.09002 * 115.54994 * 39.73053 * 21 11 9 41 41 H 1.08998 * 117.49305 * 0.02562 * 22 21 11 42 42 H 1.08999 * 117.49842 * 145.02076 * 22 21 11 43 43 H 1.08998 * 117.49507 * 214.97510 * 23 21 11 44 44 H 1.08998 * 117.50334 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5958 1.9850 -0.8347 5 6 1.6499 2.1213 1.3146 6 6 2.2733 1.3600 2.4862 7 6 3.7966 1.3624 2.3433 8 6 4.1866 0.6837 1.0287 9 6 3.5632 1.4450 -0.1429 10 1 3.9265 2.4727 -0.1425 11 7 3.9376 0.7933 -1.4051 12 6 5.3963 0.6575 -1.5150 13 6 6.0320 2.0233 -1.4787 14 1 5.4228 2.8981 -1.3063 15 6 7.3916 2.1560 -1.6654 16 7 8.1335 1.0906 -1.8758 17 14 8.1799 3.8489 -1.6197 18 1 7.9375 4.4722 -0.2939 19 1 9.6418 3.7205 -1.8470 20 1 7.5871 4.6998 -2.6826 21 6 3.3884 1.5214 -2.5567 22 6 2.1981 0.8953 -3.2861 23 6 3.5813 0.9011 -3.9420 24 1 -0.3634 0.5138 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 2.0136 3.1489 1.3147 30 1 0.5647 2.1196 1.4164 31 1 1.9959 1.8438 3.4227 32 1 1.9100 0.3324 2.4862 33 1 4.2408 0.8205 3.1782 34 1 4.1599 2.3901 2.3432 35 1 3.8233 -0.3440 1.0286 36 1 5.2719 0.6850 0.9270 37 1 5.7693 0.0607 -0.6826 38 1 5.6455 0.1655 -2.4551 39 1 9.0902 1.1839 -2.0068 40 1 3.4186 2.6086 -2.4834 41 1 1.8223 -0.0567 -2.9112 42 1 1.4454 1.5706 -3.6930 43 1 3.7378 1.5802 -4.7801 44 1 4.1160 -0.0470 -3.9989 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111744031.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:29:14 Heat of formation + Delta-G solvation = -9.628946 kcal Electronic energy + Delta-G solvation = -20321.570651 eV Core-core repulsion = 17658.964715 eV Total energy + Delta-G solvation = -2662.605936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.85273 -38.17222 -35.61774 -34.08511 -33.80908 -30.38494 -29.98952 -27.79431 -25.04403 -24.27831 -23.10102 -22.88717 -22.17652 -20.80412 -19.23448 -18.15578 -17.33894 -16.79597 -16.36677 -15.75026 -15.57828 -15.37798 -14.79066 -14.35121 -14.08197 -13.94792 -13.77899 -13.42408 -13.09480 -12.98388 -12.89179 -12.64348 -12.47529 -12.21447 -12.09255 -12.03497 -11.89132 -11.84325 -11.78762 -11.40848 -11.15374 -11.06742 -10.74760 -10.65488 -10.57345 -10.39048 -8.93049 -8.11313 -6.29835 1.33262 1.33850 1.41870 2.36404 3.07588 3.13619 3.29067 3.89898 3.94709 4.14232 4.21020 4.26375 4.38529 4.41145 4.48073 4.54469 4.64914 4.71111 4.75418 4.85873 4.87102 4.89538 4.96433 5.00923 5.01826 5.16611 5.22475 5.25332 5.30024 5.33798 5.34345 5.38464 5.42709 5.45115 5.48468 5.60617 5.63128 5.70475 5.81941 5.88216 6.14100 6.35808 6.72172 6.92049 7.40307 8.89459 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020567 B = 0.008222 C = 0.006645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.104873 B = 3404.569937 C = 4212.378297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.108 4.108 3 C -0.068 4.068 4 H 0.061 0.939 5 C -0.112 4.112 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.106 4.106 9 C 0.107 3.893 10 H 0.007 0.993 11 N -0.502 5.502 12 C 0.205 3.795 13 C -0.541 4.541 14 H 0.047 0.953 15 C 0.013 3.987 16 N -0.926 5.926 17 Si 0.947 3.053 18 H -0.273 1.273 19 H -0.281 1.281 20 H -0.273 1.273 21 C 0.018 3.982 22 C -0.140 4.140 23 C -0.180 4.180 24 H 0.061 0.939 25 H 0.051 0.949 26 H 0.055 0.945 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.064 0.936 36 H 0.033 0.967 37 H 0.009 0.991 38 H 0.003 0.997 39 H 0.263 0.737 40 H 0.058 0.942 41 H 0.099 0.901 42 H 0.108 0.892 43 H 0.092 0.908 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.245 0.242 5.057 16.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.087 4.087 4 H 0.079 0.921 5 C -0.149 4.149 6 C -0.149 4.149 7 C -0.151 4.151 8 C -0.144 4.144 9 C -0.001 4.001 10 H 0.025 0.975 11 N -0.224 5.224 12 C 0.078 3.922 13 C -0.580 4.580 14 H 0.065 0.935 15 C -0.186 4.186 16 N -0.566 5.566 17 Si 0.773 3.227 18 H -0.198 1.198 19 H -0.207 1.207 20 H -0.198 1.198 21 C -0.091 4.091 22 C -0.178 4.178 23 C -0.217 4.217 24 H 0.080 0.920 25 H 0.070 0.930 26 H 0.074 0.926 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.086 0.914 34 H 0.064 0.936 35 H 0.083 0.917 36 H 0.052 0.948 37 H 0.027 0.973 38 H 0.021 0.979 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.117 0.883 42 H 0.126 0.874 43 H 0.110 0.890 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -15.261 -0.299 5.022 16.069 hybrid contribution 1.853 1.666 -0.317 2.512 sum -13.408 1.367 4.705 14.275 Atomic orbital electron populations 1.21780 0.95011 1.01537 1.01854 1.21477 0.95772 0.95468 1.01806 1.21069 0.92711 0.97425 0.97529 0.92108 1.21584 1.01036 0.98343 0.93976 1.21536 0.93764 1.01327 0.98237 1.21493 0.97430 0.99885 0.96332 1.21514 0.99016 0.99486 0.94405 1.21379 0.95336 0.94396 0.89025 0.97470 1.62292 1.11761 1.47763 1.00620 1.19386 0.83387 0.94374 0.95019 1.21873 0.93123 0.94528 1.48466 0.93484 1.25710 0.98079 0.99805 0.94976 1.70048 1.06153 1.30348 1.50097 0.85780 0.77519 0.80753 0.78673 1.19785 1.20675 1.19811 1.21997 1.02766 0.93909 0.90435 1.23109 0.90222 1.02820 1.01604 1.22855 1.01018 1.02233 0.95637 0.91992 0.92975 0.92634 0.92521 0.92328 0.93383 0.89827 0.90755 0.90926 0.91446 0.93587 0.91734 0.94840 0.97343 0.97928 0.92826 0.92390 0.88252 0.87359 0.88964 0.90581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.68 71.98 0.70 -2.23 16 2 C -0.11 -2.85 4.61 30.60 0.14 -2.71 16 3 C -0.07 -2.01 1.90 -10.79 -0.02 -2.03 16 4 H 0.06 1.83 6.92 -2.39 -0.02 1.81 16 5 C -0.11 -2.73 5.22 30.59 0.16 -2.57 16 6 C -0.11 -2.61 5.65 30.60 0.17 -2.44 16 7 C -0.11 -3.38 5.92 30.59 0.18 -3.20 16 8 C -0.11 -3.98 4.51 30.59 0.14 -3.85 16 9 C 0.11 4.11 1.21 44.92 0.05 4.16 16 10 H 0.01 0.33 6.60 -2.39 -0.02 0.31 16 11 N -0.50 -21.35 3.85 -850.39 -3.28 -24.62 16 12 C 0.20 10.83 4.51 85.55 0.39 11.22 16 13 C -0.54 -30.42 7.86 25.60 0.20 -30.22 16 14 H 0.05 2.66 6.26 -2.91 -0.02 2.64 16 15 C 0.01 0.76 5.46 84.65 0.46 1.22 16 16 N -0.93 -56.02 13.29 21.45 0.28 -55.73 16 17 Si 0.95 45.03 29.54 68.60 2.03 47.05 16 18 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 20 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 21 C 0.02 0.72 3.19 44.92 0.14 0.86 16 22 C -0.14 -4.23 9.87 30.62 0.30 -3.93 16 23 C -0.18 -6.59 9.78 30.62 0.30 -6.29 16 24 H 0.06 1.10 6.59 -2.39 -0.02 1.09 16 25 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.05 1.02 8.14 -2.38 -0.02 1.01 16 27 H 0.06 1.74 6.11 -2.38 -0.01 1.72 16 28 H 0.06 1.56 4.83 -2.39 -0.01 1.55 16 29 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.08 1.66 6.59 -2.39 -0.02 1.64 16 31 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.07 1.61 6.31 -2.39 -0.02 1.59 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.05 1.46 8.14 -2.39 -0.02 1.45 16 35 H 0.06 2.32 6.56 -2.38 -0.02 2.30 16 36 H 0.03 1.52 6.30 -2.38 -0.02 1.50 16 37 H 0.01 0.49 6.19 -2.39 -0.01 0.48 16 38 H 0.00 0.15 7.10 -2.39 -0.02 0.13 16 39 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 40 H 0.06 2.45 7.97 -2.39 -0.02 2.43 16 41 H 0.10 2.92 6.96 -2.39 -0.02 2.90 16 42 H 0.11 2.69 8.14 -2.39 -0.02 2.67 16 43 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 44 H 0.08 3.05 7.59 -2.39 -0.02 3.03 16 Total: -1.00 -61.66 319.69 3.31 -58.35 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: 0.96 Total: 16.96 kcal Atomic # 6 Polarization: -45.32 SS G_CDS: 3.32 Total: -42.01 kcal Atomic # 7 Polarization: -77.37 SS G_CDS: -2.99 Total: -80.36 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Total: -61.66 3.31 -58.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111744031.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.719 kcal (2) G-P(sol) polarization free energy of solvation -61.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds