Wall clock time and date at job start Mon Mar 30 2020 06:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47253 * 2 1 4 4 H 1.09003 * 108.89361 * 59.45274 * 3 2 1 5 5 C 1.54072 * 108.97417 * 300.69558 * 3 2 1 6 6 C 1.54296 * 112.28355 * 198.27020 * 5 3 2 7 7 C 1.50466 * 113.03588 * 318.29802 * 6 5 3 8 8 C 1.54512 * 108.84899 * 92.15406 * 7 6 5 9 9 C 1.45865 * 111.59188 * 282.81029 * 8 7 6 10 10 N 1.44264 * 108.97952 * 178.22228 * 3 2 1 11 11 C 1.46896 * 111.00053 * 339.95230 * 10 3 2 12 12 C 1.53005 * 109.47039 * 169.15286 * 11 10 3 13 13 C 1.50704 * 115.55959 * 145.88881 * 12 11 10 14 14 H 1.07995 * 120.00147 * 142.63142 * 13 12 11 15 15 C 1.37878 * 120.00180 * 322.62472 * 13 12 11 16 16 N 1.31514 * 119.99954 * 348.73120 * 15 13 12 17 17 Si 1.86797 * 120.00180 * 168.72836 * 15 13 12 18 18 H 1.48500 * 109.46827 * 60.00115 * 17 15 13 19 19 H 1.48502 * 109.47202 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47008 * 300.00693 * 17 15 13 21 21 C 1.52991 * 117.49728 * 291.57370 * 12 11 10 22 22 C 1.53000 * 60.00296 * 107.49200 * 21 12 11 23 23 H 1.08992 * 109.47496 * 65.45621 * 1 2 3 24 24 H 1.08997 * 109.46845 * 185.46174 * 1 2 3 25 25 H 1.09002 * 109.46816 * 305.45717 * 1 2 3 26 26 H 1.08997 * 109.46872 * 240.00038 * 2 1 3 27 27 H 1.08997 * 109.47350 * 119.99401 * 2 1 3 28 28 H 1.09002 * 108.92302 * 77.54897 * 5 3 2 29 29 H 1.08996 * 108.92119 * 318.98716 * 5 3 2 30 30 H 1.09004 * 108.76886 * 197.38561 * 6 5 3 31 31 H 1.09000 * 108.77366 * 79.21896 * 6 5 3 32 32 H 1.09000 * 109.57150 * 332.34750 * 7 6 5 33 33 H 1.08996 * 109.57405 * 211.96808 * 7 6 5 34 34 H 1.09000 * 109.04985 * 162.26740 * 8 7 6 35 35 H 1.09003 * 108.99906 * 43.31906 * 8 7 6 36 36 H 1.09000 * 108.79242 * 300.44141 * 9 8 7 37 37 H 1.09001 * 108.78918 * 182.22005 * 9 8 7 38 38 H 1.08995 * 109.47426 * 49.15530 * 11 10 3 39 39 H 1.09002 * 109.47352 * 289.15272 * 11 10 3 40 40 H 0.97001 * 120.00463 * 185.00192 * 16 15 13 41 41 H 1.08999 * 117.50320 * 0.02562 * 21 12 11 42 42 H 1.09004 * 117.50219 * 214.97705 * 21 12 11 43 43 H 1.09004 * 117.50193 * 107.48422 * 22 21 12 44 44 H 1.09000 * 117.49762 * 252.49088 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6635 1.9500 0.8882 5 6 1.5058 2.1628 -1.2529 6 6 2.3053 3.4417 -1.5781 7 6 2.6444 4.2509 -0.3557 8 6 4.0319 3.8124 0.1642 9 6 3.9594 2.5465 0.8853 10 7 3.4820 1.4303 0.0423 11 6 3.9832 0.1426 0.5406 12 6 5.4951 0.0637 0.3197 13 6 6.2682 -0.6850 1.3747 14 1 7.1092 -1.3009 1.0926 15 6 5.9019 -0.5835 2.7000 16 7 5.0302 0.3277 3.0734 17 14 6.6438 -1.7402 3.9653 18 1 8.1188 -1.5701 3.9867 19 1 6.0893 -1.4275 5.3070 20 1 6.3125 -3.1429 3.6078 21 6 5.9941 -0.0324 -1.1234 22 6 6.1770 1.2664 -0.3357 23 1 -0.3634 0.4268 -0.9347 24 1 -0.3633 -1.0230 0.0978 25 1 -0.3633 0.5962 0.8371 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 0.4621 2.4307 -1.0885 29 1 1.5648 1.4834 -2.1032 30 1 1.7170 4.0602 -2.2560 31 1 3.2310 3.1588 -2.0793 32 1 1.8942 4.0785 0.4160 33 1 2.6690 5.3095 -0.6138 34 1 4.4206 4.5809 0.8323 35 1 4.7092 3.7013 -0.6826 36 1 3.2817 2.6626 1.7311 37 1 4.9515 2.3011 1.2643 38 1 3.4946 -0.6701 0.0031 39 1 3.7665 0.0558 1.6054 40 1 4.8268 0.4477 4.0142 41 1 5.2453 -0.0391 -1.9154 42 1 6.8816 -0.6371 -1.3098 43 1 7.1848 1.5162 -0.0038 44 1 5.5487 2.1139 -0.6097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124990006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:21 Heat of formation + Delta-G solvation = 31.402774 kcal Electronic energy + Delta-G solvation = -20586.332418 eV Core-core repulsion = 17925.505752 eV Total energy + Delta-G solvation = -2660.826667 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -39.37908 -36.16953 -34.52464 -32.58058 -32.11436 -30.04836 -26.98717 -25.51238 -24.74871 -23.60502 -21.54378 -20.82029 -20.11458 -18.88745 -17.88168 -16.19646 -15.40801 -15.00012 -14.76633 -14.64888 -13.85220 -13.39936 -13.25773 -13.02953 -12.79125 -12.64173 -12.04045 -11.63205 -11.57521 -11.40842 -11.18307 -10.97519 -10.94412 -10.72950 -10.60228 -10.28330 -10.19782 -10.12079 -9.92543 -9.78530 -9.66787 -9.54654 -8.97244 -8.94161 -8.52040 -7.89829 -7.15138 -5.96620 -4.04952 3.27923 3.33395 3.37044 4.37146 4.80276 5.05898 5.20465 5.28468 5.38791 5.50384 5.56091 5.71195 5.75960 5.82625 5.86461 5.94291 6.11469 6.14328 6.21670 6.27753 6.31799 6.37110 6.44698 6.51744 6.56728 6.62019 6.72784 6.73364 6.78172 6.81820 6.84546 6.93981 6.98438 7.09136 7.27088 7.38201 7.52949 7.63861 7.65279 8.00722 8.22249 8.34511 8.63706 8.92266 9.52234 10.96919 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.008012 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.223681 B = 3493.951485 C = 3877.192239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.090 3.910 4 H 0.036 0.964 5 C -0.100 4.100 6 C -0.106 4.106 7 C -0.114 4.114 8 C -0.113 4.113 9 C 0.056 3.944 10 N -0.520 5.520 11 C 0.071 3.929 12 C 0.054 3.946 13 C -0.485 4.485 14 H 0.057 0.943 15 C 0.068 3.932 16 N -0.878 5.878 17 Si 0.891 3.109 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.277 1.277 21 C -0.207 4.207 22 C -0.202 4.202 23 H 0.051 0.949 24 H 0.048 0.952 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.048 0.952 29 H 0.055 0.945 30 H 0.041 0.959 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.065 0.935 36 H 0.020 0.980 37 H 0.103 0.897 38 H 0.048 0.952 39 H 0.098 0.902 40 H 0.260 0.740 41 H 0.067 0.933 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.401 4.461 -5.082 10.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.171 4.171 3 C -0.020 4.020 4 H 0.054 0.946 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.152 4.152 8 C -0.151 4.151 9 C -0.071 4.071 10 N -0.243 5.243 11 C -0.056 4.056 12 C 0.053 3.947 13 C -0.522 4.522 14 H 0.076 0.924 15 C -0.133 4.133 16 N -0.516 5.516 17 Si 0.719 3.281 18 H -0.204 1.204 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.245 4.245 22 C -0.240 4.240 23 H 0.070 0.930 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.039 0.961 37 H 0.121 0.879 38 H 0.066 0.934 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -7.357 4.535 -5.386 10.183 hybrid contribution 0.155 -0.649 1.429 1.577 sum -7.202 3.886 -3.958 9.090 Atomic orbital electron populations 1.21817 0.96803 1.00881 1.01208 1.22054 0.94698 0.97555 1.02780 1.21386 0.89940 0.94370 0.96279 0.94595 1.21982 0.97416 0.96321 0.98075 1.21159 1.00439 0.95489 0.97255 1.21347 0.97856 0.98036 0.97955 1.20739 0.96358 0.97431 1.00557 1.20950 1.03436 0.89952 0.92739 1.61726 1.06011 1.04718 1.51882 1.22156 0.93848 0.87452 1.02102 1.18989 0.91408 0.95767 0.88542 1.20652 1.13466 1.27472 0.90645 0.92433 1.24944 0.94852 0.95239 0.98279 1.69782 1.33768 1.32082 1.15977 0.86679 0.79387 0.81709 0.80370 1.20363 1.21320 1.20222 1.22778 1.01877 1.02635 0.97162 1.23208 1.00753 0.92780 1.07284 0.93020 0.93331 0.93248 0.91595 0.90966 0.93360 0.92638 0.94060 0.91587 0.92669 0.93203 0.92914 0.91678 0.96133 0.87891 0.93386 0.88457 0.92936 0.91473 0.91847 0.92062 0.88972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.43 37.16 0.35 -1.66 16 2 C -0.13 -2.19 3.94 -26.73 -0.11 -2.30 16 3 C 0.09 1.56 1.91 -68.56 -0.13 1.43 16 4 H 0.04 0.66 6.51 -51.93 -0.34 0.32 16 5 C -0.10 -1.48 4.61 -25.49 -0.12 -1.60 16 6 C -0.11 -1.54 5.42 -27.32 -0.15 -1.69 16 7 C -0.11 -1.68 5.60 -27.20 -0.15 -1.83 16 8 C -0.11 -1.91 5.36 -29.31 -0.16 -2.06 16 9 C 0.06 1.13 3.68 -6.71 -0.02 1.11 16 10 N -0.52 -10.26 3.36 -231.43 -0.78 -11.04 16 11 C 0.07 1.61 3.46 -3.82 -0.01 1.60 16 12 C 0.05 1.32 1.86 -155.66 -0.29 1.03 16 13 C -0.48 -13.05 9.03 -34.44 -0.31 -13.36 16 14 H 0.06 1.57 7.84 -52.49 -0.41 1.16 16 15 C 0.07 1.80 5.16 -17.82 -0.09 1.71 16 16 N -0.88 -23.17 10.44 55.43 0.58 -22.59 16 17 Si 0.89 20.62 29.56 -169.99 -5.02 15.60 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C -0.21 -4.68 9.95 -26.74 -0.27 -4.95 16 22 C -0.20 -4.66 7.97 -26.73 -0.21 -4.87 16 23 H 0.05 0.63 7.10 -51.93 -0.37 0.27 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 1.11 7.39 -51.93 -0.38 0.73 16 27 H 0.07 1.34 6.40 -51.93 -0.33 1.00 16 28 H 0.05 0.65 7.52 -51.93 -0.39 0.26 16 29 H 0.05 0.83 7.96 -51.93 -0.41 0.41 16 30 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.07 1.06 7.38 -51.93 -0.38 0.67 16 32 H 0.05 0.83 7.15 -51.93 -0.37 0.46 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.06 1.13 5.98 -51.93 -0.31 0.82 16 36 H 0.02 0.43 7.24 -51.93 -0.38 0.06 16 37 H 0.10 2.42 5.40 -51.93 -0.28 2.14 16 38 H 0.05 1.07 5.48 -51.93 -0.28 0.79 16 39 H 0.10 2.48 4.80 -51.93 -0.25 2.23 16 40 H 0.26 6.68 8.32 -40.82 -0.34 6.34 16 41 H 0.07 1.45 8.14 -51.93 -0.42 1.02 16 42 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 44 H 0.09 2.00 3.85 -51.93 -0.20 1.80 16 LS Contribution 313.50 15.07 4.72 4.72 Total: -1.00 -25.59 313.50 -9.78 -35.37 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -7.61 Total: 5.38 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: -1.67 Total: -27.45 kcal Atomic # 7 Polarization: -33.43 SS G_CDS: -0.20 Total: -33.63 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -25.59 -9.78 -35.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124990006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.777 kcal (2) G-P(sol) polarization free energy of solvation -25.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.374 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds