Wall clock time and date at job start Mon Mar 30 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47253 * 2 1 4 4 H 1.09003 * 108.89361 * 59.45274 * 3 2 1 5 5 C 1.54072 * 108.97417 * 300.69558 * 3 2 1 6 6 C 1.54296 * 112.28355 * 198.27020 * 5 3 2 7 7 C 1.50466 * 113.03588 * 318.29802 * 6 5 3 8 8 C 1.54512 * 108.84899 * 92.15406 * 7 6 5 9 9 C 1.45865 * 111.59188 * 282.81029 * 8 7 6 10 10 N 1.44264 * 108.97952 * 178.22228 * 3 2 1 11 11 C 1.46896 * 111.00053 * 339.95230 * 10 3 2 12 12 C 1.53005 * 109.47039 * 169.15286 * 11 10 3 13 13 C 1.50704 * 115.55959 * 145.88881 * 12 11 10 14 14 H 1.07995 * 120.00147 * 142.63142 * 13 12 11 15 15 C 1.37878 * 120.00180 * 322.62472 * 13 12 11 16 16 N 1.31514 * 119.99954 * 348.73120 * 15 13 12 17 17 Si 1.86797 * 120.00180 * 168.72836 * 15 13 12 18 18 H 1.48500 * 109.46827 * 60.00115 * 17 15 13 19 19 H 1.48502 * 109.47202 * 180.02562 * 17 15 13 20 20 H 1.48497 * 109.47008 * 300.00693 * 17 15 13 21 21 C 1.52991 * 117.49728 * 291.57370 * 12 11 10 22 22 C 1.53000 * 60.00296 * 107.49200 * 21 12 11 23 23 H 1.08992 * 109.47496 * 65.45621 * 1 2 3 24 24 H 1.08997 * 109.46845 * 185.46174 * 1 2 3 25 25 H 1.09002 * 109.46816 * 305.45717 * 1 2 3 26 26 H 1.08997 * 109.46872 * 240.00038 * 2 1 3 27 27 H 1.08997 * 109.47350 * 119.99401 * 2 1 3 28 28 H 1.09002 * 108.92302 * 77.54897 * 5 3 2 29 29 H 1.08996 * 108.92119 * 318.98716 * 5 3 2 30 30 H 1.09004 * 108.76886 * 197.38561 * 6 5 3 31 31 H 1.09000 * 108.77366 * 79.21896 * 6 5 3 32 32 H 1.09000 * 109.57150 * 332.34750 * 7 6 5 33 33 H 1.08996 * 109.57405 * 211.96808 * 7 6 5 34 34 H 1.09000 * 109.04985 * 162.26740 * 8 7 6 35 35 H 1.09003 * 108.99906 * 43.31906 * 8 7 6 36 36 H 1.09000 * 108.79242 * 300.44141 * 9 8 7 37 37 H 1.09001 * 108.78918 * 182.22005 * 9 8 7 38 38 H 1.08995 * 109.47426 * 49.15530 * 11 10 3 39 39 H 1.09002 * 109.47352 * 289.15272 * 11 10 3 40 40 H 0.97001 * 120.00463 * 185.00192 * 16 15 13 41 41 H 1.08999 * 117.50320 * 0.02562 * 21 12 11 42 42 H 1.09004 * 117.50219 * 214.97705 * 21 12 11 43 43 H 1.09004 * 117.50193 * 107.48422 * 22 21 12 44 44 H 1.09000 * 117.49762 * 252.49088 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6635 1.9500 0.8882 5 6 1.5058 2.1628 -1.2529 6 6 2.3053 3.4417 -1.5781 7 6 2.6444 4.2509 -0.3557 8 6 4.0319 3.8124 0.1642 9 6 3.9594 2.5465 0.8853 10 7 3.4820 1.4303 0.0423 11 6 3.9832 0.1426 0.5406 12 6 5.4951 0.0637 0.3197 13 6 6.2682 -0.6850 1.3747 14 1 7.1092 -1.3009 1.0926 15 6 5.9019 -0.5835 2.7000 16 7 5.0302 0.3277 3.0734 17 14 6.6438 -1.7402 3.9653 18 1 8.1188 -1.5701 3.9867 19 1 6.0893 -1.4275 5.3070 20 1 6.3125 -3.1429 3.6078 21 6 5.9941 -0.0324 -1.1234 22 6 6.1770 1.2664 -0.3357 23 1 -0.3634 0.4268 -0.9347 24 1 -0.3633 -1.0230 0.0978 25 1 -0.3633 0.5962 0.8371 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5137 0.8900 28 1 0.4621 2.4307 -1.0885 29 1 1.5648 1.4834 -2.1032 30 1 1.7170 4.0602 -2.2560 31 1 3.2310 3.1588 -2.0793 32 1 1.8942 4.0785 0.4160 33 1 2.6690 5.3095 -0.6138 34 1 4.4206 4.5809 0.8323 35 1 4.7092 3.7013 -0.6826 36 1 3.2817 2.6626 1.7311 37 1 4.9515 2.3011 1.2643 38 1 3.4946 -0.6701 0.0031 39 1 3.7665 0.0558 1.6054 40 1 4.8268 0.4477 4.0142 41 1 5.2453 -0.0391 -1.9154 42 1 6.8816 -0.6371 -1.3098 43 1 7.1848 1.5162 -0.0038 44 1 5.5487 2.1139 -0.6097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124990006.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:20 Heat of formation + Delta-G solvation = 19.780858 kcal Electronic energy + Delta-G solvation = -20586.836382 eV Core-core repulsion = 17925.505752 eV Total energy + Delta-G solvation = -2661.330631 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.90945 -37.89150 -35.85475 -34.23693 -33.95058 -31.33650 -28.58432 -27.46983 -26.06404 -25.12595 -22.99872 -22.52561 -21.68130 -20.47903 -19.43437 -18.10193 -16.90380 -16.69278 -16.43921 -16.13259 -15.46413 -14.86232 -14.68651 -14.41067 -14.25890 -14.05909 -13.69604 -13.22830 -12.97818 -12.92806 -12.84386 -12.77364 -12.50767 -12.29150 -12.10791 -11.93816 -11.80454 -11.43538 -11.41486 -11.25444 -11.07258 -11.04957 -10.88216 -10.74309 -10.39132 -9.78903 -8.84542 -7.95484 -6.13079 1.40606 1.43194 1.49857 2.42004 3.02116 3.33477 3.78365 3.93505 4.00427 4.09654 4.31501 4.33993 4.44924 4.49718 4.56443 4.61285 4.71293 4.75565 4.81925 4.87059 4.92071 4.94153 5.00766 5.08301 5.15357 5.16331 5.23378 5.27145 5.30881 5.37780 5.40805 5.47010 5.54936 5.57693 5.61449 5.64824 5.68504 5.73512 5.82777 6.12467 6.38133 6.61570 6.80603 6.91411 7.45543 8.92613 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.022337 B = 0.008012 C = 0.007220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.223681 B = 3493.951485 C = 3877.192239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.129 4.129 3 C 0.086 3.914 4 H 0.024 0.976 5 C -0.094 4.094 6 C -0.105 4.105 7 C -0.107 4.107 8 C -0.112 4.112 9 C 0.070 3.930 10 N -0.514 5.514 11 C 0.085 3.915 12 C 0.028 3.972 13 C -0.514 4.514 14 H 0.045 0.955 15 C 0.032 3.968 16 N -0.888 5.888 17 Si 0.947 3.053 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.274 1.274 21 C -0.193 4.193 22 C -0.194 4.194 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.042 0.958 28 H 0.070 0.930 29 H 0.058 0.942 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.002 0.998 37 H 0.065 0.935 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.259 0.741 41 H 0.081 0.919 42 H 0.062 0.938 43 H 0.046 0.954 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.829 5.241 -6.161 11.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C -0.023 4.023 4 H 0.042 0.958 5 C -0.132 4.132 6 C -0.143 4.143 7 C -0.145 4.145 8 C -0.149 4.149 9 C -0.057 4.057 10 N -0.238 5.238 11 C -0.042 4.042 12 C 0.027 3.973 13 C -0.552 4.552 14 H 0.063 0.937 15 C -0.169 4.169 16 N -0.526 5.526 17 Si 0.773 3.227 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.200 1.200 21 C -0.230 4.230 22 C -0.231 4.231 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.020 0.980 37 H 0.083 0.917 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.099 0.901 42 H 0.081 0.919 43 H 0.065 0.935 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.790 5.322 -6.474 12.145 hybrid contribution 0.610 -0.894 1.786 2.088 sum -8.180 4.428 -4.689 10.417 Atomic orbital electron populations 1.21748 0.94029 1.01836 1.02266 1.21955 0.97123 0.96584 1.01070 1.21523 0.88177 0.95233 0.97388 0.95776 1.21941 0.98523 0.96338 0.96401 1.21159 1.00132 0.95582 0.97405 1.21299 0.95795 0.99531 0.97850 1.20686 0.98210 0.95833 1.00217 1.20798 1.00711 0.91481 0.92751 1.61789 1.07825 1.03214 1.50923 1.21842 0.92967 0.89089 1.00328 1.19116 0.92330 0.96706 0.89124 1.20875 1.13965 1.28375 0.92001 0.93700 1.25532 0.95358 0.96315 0.99674 1.69930 1.34044 1.32586 1.15996 0.85793 0.78565 0.79949 0.78347 1.20302 1.20826 1.19973 1.22765 1.01894 1.01945 0.96441 1.23121 0.99951 0.93136 1.06920 0.91149 0.92360 0.93068 0.92017 0.93952 0.91122 0.92336 0.91354 0.93107 0.93016 0.90726 0.92102 0.92040 0.97994 0.91654 0.93407 0.91348 0.93133 0.90089 0.91907 0.93501 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.43 71.98 0.68 -2.81 16 2 C -0.13 -4.19 3.94 30.59 0.12 -4.07 16 3 C 0.09 2.90 1.91 45.77 0.09 2.99 16 4 H 0.02 0.88 6.51 -2.39 -0.02 0.86 16 5 C -0.09 -2.52 4.61 31.40 0.14 -2.38 16 6 C -0.11 -2.72 5.42 30.21 0.16 -2.56 16 7 C -0.11 -2.86 5.60 30.29 0.17 -2.70 16 8 C -0.11 -3.65 5.36 28.92 0.15 -3.50 16 9 C 0.07 2.85 3.68 83.94 0.31 3.16 16 10 N -0.51 -20.32 3.36 -886.12 -2.98 -23.30 16 11 C 0.08 3.96 3.46 86.31 0.30 4.26 16 12 C 0.03 1.40 1.86 -52.93 -0.10 1.30 16 13 C -0.51 -28.47 9.03 25.60 0.23 -28.24 16 14 H 0.04 2.52 7.84 -2.91 -0.02 2.49 16 15 C 0.03 1.70 5.16 84.65 0.44 2.14 16 16 N -0.89 -48.19 10.44 21.45 0.22 -47.97 16 17 Si 0.95 43.02 29.56 68.60 2.03 45.05 16 18 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 20 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 21 C -0.19 -8.72 9.95 30.59 0.30 -8.41 16 22 C -0.19 -9.01 7.97 30.60 0.24 -8.76 16 23 H 0.07 1.49 7.10 -2.39 -0.02 1.47 16 24 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.06 2.03 7.39 -2.39 -0.02 2.01 16 27 H 0.04 1.60 6.40 -2.39 -0.02 1.59 16 28 H 0.07 1.61 7.52 -2.39 -0.02 1.60 16 29 H 0.06 1.56 7.96 -2.39 -0.02 1.54 16 30 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.05 1.49 7.38 -2.39 -0.02 1.47 16 32 H 0.05 1.43 7.15 -2.39 -0.02 1.42 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.06 2.06 5.98 -2.39 -0.01 2.05 16 36 H 0.00 0.08 7.24 -2.39 -0.02 0.06 16 37 H 0.06 3.16 5.40 -2.39 -0.01 3.14 16 38 H 0.05 2.18 5.48 -2.39 -0.01 2.17 16 39 H 0.07 3.62 4.80 -2.39 -0.01 3.61 16 40 H 0.26 13.60 8.32 -92.71 -0.77 12.83 16 41 H 0.08 3.40 8.14 -2.39 -0.02 3.38 16 42 H 0.06 2.81 8.14 -2.38 -0.02 2.79 16 43 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 44 H 0.10 4.55 3.85 -2.39 -0.01 4.55 16 Total: -1.00 -55.75 313.50 3.47 -52.27 By element: Atomic # 1 Polarization: 22.57 SS G_CDS: 0.96 Total: 23.53 kcal Atomic # 6 Polarization: -52.83 SS G_CDS: 3.24 Total: -49.59 kcal Atomic # 7 Polarization: -68.51 SS G_CDS: -2.75 Total: -71.27 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 2.03 Total: 45.05 kcal Total: -55.75 3.47 -52.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124990006.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.055 kcal (2) G-P(sol) polarization free energy of solvation -55.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds