Wall clock time and date at job start Mon Mar 30 2020 07:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46796 * 2 1 4 4 H 1.09003 * 109.46543 * 56.00669 * 3 2 1 5 5 C 1.50698 * 109.46654 * 176.00174 * 3 2 1 6 6 H 1.08005 * 119.99623 * 114.49587 * 5 3 2 7 7 C 1.37874 * 120.00365 * 294.48716 * 5 3 2 8 8 N 1.31517 * 120.00004 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99998 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.46983 * 89.99811 * 9 7 5 11 11 H 1.48498 * 109.47072 * 209.99840 * 9 7 5 12 12 H 1.48500 * 109.47021 * 329.99728 * 9 7 5 13 13 N 1.46893 * 109.47316 * 296.00415 * 3 2 1 14 14 C 1.46868 * 111.00062 * 300.63216 * 13 3 2 15 15 C 1.53029 * 109.57133 * 174.28276 * 14 13 3 16 16 C 1.53145 * 109.32709 * 59.06336 * 15 14 13 17 17 C 1.53082 * 109.09265 * 302.40675 * 16 15 14 18 18 H 1.09001 * 109.49382 * 297.86883 * 17 16 15 19 19 C 1.52969 * 109.59720 * 177.73860 * 17 16 15 20 20 C 1.53023 * 109.39189 * 180.15545 * 19 17 16 21 21 C 1.52983 * 109.60790 * 59.79840 * 20 19 17 22 22 C 1.53022 * 109.53810 * 300.19872 * 21 20 19 23 23 C 1.46818 * 110.97848 * 176.52398 * 13 3 2 24 24 H 1.08999 * 109.37422 * 66.00552 * 23 13 3 25 25 H 1.09003 * 109.47317 * 175.15788 * 1 2 3 26 26 H 1.09000 * 109.47193 * 295.15323 * 1 2 3 27 27 H 1.08997 * 109.47550 * 55.15813 * 1 2 3 28 28 H 1.09007 * 109.46858 * 240.00848 * 2 1 3 29 29 H 1.08996 * 109.47370 * 120.00488 * 2 1 3 30 30 H 0.97004 * 119.99639 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.45002 * 54.26394 * 14 13 3 32 32 H 1.08993 * 109.45085 * 294.30773 * 14 13 3 33 33 H 1.09000 * 109.49275 * 179.02059 * 15 14 13 34 34 H 1.08996 * 109.49423 * 299.10688 * 15 14 13 35 35 H 1.09003 * 109.53158 * 62.29302 * 16 15 14 36 36 H 1.09004 * 109.53265 * 182.52235 * 16 15 14 37 37 H 1.08993 * 109.48550 * 300.03415 * 19 17 16 38 38 H 1.09002 * 109.48362 * 60.08937 * 19 17 16 39 39 H 1.09002 * 109.38882 * 299.77922 * 20 19 17 40 40 H 1.08997 * 109.45422 * 179.86055 * 20 19 17 41 41 H 1.09007 * 109.46248 * 180.17512 * 21 20 19 42 42 H 1.08998 * 109.45013 * 60.21055 * 21 20 19 43 43 H 1.08997 * 109.47886 * 299.94489 * 22 21 20 44 44 H 1.09000 * 109.49267 * 179.91844 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6192 1.9765 0.8521 5 6 3.5436 1.4437 0.0991 6 1 4.1387 1.8120 -0.7236 7 6 4.1598 0.9747 1.2398 8 7 5.4721 0.9762 1.3264 9 14 3.1306 0.3372 2.6624 10 1 2.8956 -1.1189 2.4898 11 1 3.8504 0.5744 3.9394 12 1 1.8277 1.0492 2.6889 13 7 1.6306 2.1066 -1.2447 14 6 2.1679 1.4042 -2.4173 15 6 1.6079 2.0352 -3.6940 16 6 1.9954 3.5162 -3.7394 17 6 1.4632 4.2118 -2.4839 18 1 0.3750 4.1506 -2.4678 19 6 1.8922 5.6801 -2.4900 20 6 1.3612 6.3698 -1.2315 21 6 1.9237 5.6757 0.0104 22 6 1.4964 4.2064 0.0133 23 6 2.0323 3.5188 -1.2437 24 1 3.1201 3.5853 -1.2579 25 1 -0.3634 -1.0240 -0.0867 26 1 -0.3633 0.4368 0.9302 27 1 -0.3634 0.5871 -0.8434 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.9055 0.6465 2.1292 31 1 1.8795 0.3539 -2.3749 32 1 3.2551 1.4823 -2.4205 33 1 2.0210 1.5243 -4.5637 34 1 0.5219 1.9431 -3.6991 35 1 3.0810 3.6079 -3.7746 36 1 1.5604 3.9797 -4.6250 37 1 2.9803 5.7409 -2.5045 38 1 1.4883 6.1732 -3.3743 39 1 0.2728 6.3111 -1.2185 40 1 1.6684 7.4155 -1.2335 41 1 1.5416 6.1668 0.9054 42 1 3.0119 5.7374 -0.0010 43 1 0.4083 4.1444 0.0258 44 1 1.8988 3.7123 0.8976 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218008675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:18 Heat of formation + Delta-G solvation = -23.497788 kcal Electronic energy + Delta-G solvation = -20637.318026 eV Core-core repulsion = 17974.110693 eV Total energy + Delta-G solvation = -2663.207334 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.57269 -36.25292 -34.33755 -32.11066 -31.55900 -29.60611 -28.80639 -26.97276 -23.85936 -22.75656 -22.31047 -21.53776 -19.51811 -19.32093 -18.76087 -16.59400 -15.66940 -14.68920 -14.47433 -14.35988 -13.82907 -13.68199 -13.28434 -13.16796 -12.81410 -12.59278 -12.42171 -12.00228 -11.80360 -11.54265 -11.35755 -11.12888 -11.10388 -10.83769 -10.70658 -10.57683 -10.33107 -10.27959 -10.02661 -9.97694 -9.68917 -9.59006 -9.44235 -9.24190 -8.92720 -8.54055 -7.04523 -6.09020 -4.08523 3.26714 3.37195 3.38982 4.39530 4.78979 5.07374 5.13911 5.21435 5.28945 5.45231 5.60560 5.63654 5.77208 5.81749 5.93749 5.98418 6.02540 6.06226 6.09167 6.13095 6.18584 6.26439 6.32105 6.34061 6.40142 6.46288 6.50999 6.56333 6.60710 6.69780 6.72925 6.74091 6.85167 6.89364 6.92933 7.03833 7.10603 7.21723 7.33265 7.63566 8.20832 8.28570 8.49954 8.94585 9.55307 11.03961 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.009114 C = 0.007941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.141374 B = 3071.292523 C = 3525.111228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C 0.176 3.824 4 H 0.046 0.954 5 C -0.537 4.537 6 H 0.074 0.926 7 C 0.074 3.926 8 N -0.900 5.900 9 Si 0.878 3.122 10 H -0.278 1.278 11 H -0.296 1.296 12 H -0.262 1.262 13 N -0.522 5.522 14 C 0.057 3.943 15 C -0.116 4.116 16 C -0.113 4.113 17 C -0.079 4.079 18 H 0.069 0.931 19 C -0.112 4.112 20 C -0.116 4.116 21 C -0.117 4.117 22 C -0.110 4.110 23 C 0.103 3.897 24 H 0.048 0.952 25 H 0.032 0.968 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.058 0.942 29 H 0.046 0.954 30 H 0.262 0.738 31 H 0.068 0.932 32 H 0.040 0.960 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.061 0.939 43 H 0.056 0.944 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.009 6.085 -6.350 12.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C 0.068 3.932 4 H 0.063 0.937 5 C -0.576 4.576 6 H 0.092 0.908 7 C -0.128 4.128 8 N -0.538 5.538 9 Si 0.707 3.293 10 H -0.205 1.205 11 H -0.224 1.224 12 H -0.187 1.187 13 N -0.246 5.246 14 C -0.071 4.071 15 C -0.154 4.154 16 C -0.150 4.150 17 C -0.098 4.098 18 H 0.087 0.913 19 C -0.150 4.150 20 C -0.153 4.153 21 C -0.155 4.155 22 C -0.148 4.148 23 C -0.006 4.006 24 H 0.066 0.934 25 H 0.051 0.949 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.369 6.013 -6.260 12.772 hybrid contribution 0.636 -0.496 0.945 1.243 sum -8.733 5.517 -5.315 11.617 Atomic orbital electron populations 1.21751 0.97550 0.99402 1.01489 1.21949 0.93864 0.99588 1.00640 1.19797 0.94285 0.90267 0.88809 0.93661 1.21614 0.90614 1.42436 1.02927 0.90766 1.24954 0.94619 0.95050 0.98167 1.69923 1.08358 1.47021 1.28465 0.86953 0.80885 0.79576 0.81843 1.20459 1.22363 1.18683 1.62304 1.58387 1.01066 1.02824 1.21951 0.97906 0.97746 0.89476 1.21609 1.00878 0.95320 0.97550 1.21593 1.00494 0.95852 0.97088 1.21202 1.00323 0.93396 0.94867 0.91252 1.21558 1.00795 0.95526 0.97113 1.21511 1.00231 0.98352 0.95225 1.21518 1.00936 0.96173 0.96908 1.21570 1.00227 0.94049 0.98966 1.21302 0.97926 0.88431 0.92919 0.93380 0.94925 0.94169 0.91783 0.92356 0.93564 0.92792 0.91337 0.94172 0.92740 0.92076 0.92532 0.92983 0.92242 0.92659 0.92412 0.92834 0.92649 0.92044 0.92486 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.85 37.16 0.37 -2.27 16 2 C -0.12 -2.63 4.75 -26.73 -0.13 -2.76 16 3 C 0.18 4.01 0.92 -68.87 -0.06 3.94 16 4 H 0.05 1.09 4.69 -51.93 -0.24 0.85 16 5 C -0.54 -14.43 7.69 -34.44 -0.26 -14.70 16 6 H 0.07 2.20 6.09 -52.48 -0.32 1.88 16 7 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 8 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 9 Si 0.88 21.67 24.68 -169.99 -4.20 17.47 16 10 H -0.28 -6.76 6.86 56.52 0.39 -6.37 16 11 H -0.30 -7.38 7.11 56.52 0.40 -6.98 16 12 H -0.26 -6.20 6.39 56.52 0.36 -5.84 16 13 N -0.52 -10.39 3.83 -220.17 -0.84 -11.23 16 14 C 0.06 1.09 4.80 -3.83 -0.02 1.07 16 15 C -0.12 -1.78 6.09 -26.64 -0.16 -1.95 16 16 C -0.11 -1.66 5.30 -26.61 -0.14 -1.81 16 17 C -0.08 -1.22 2.14 -90.57 -0.19 -1.41 16 18 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 19 C -0.11 -1.52 5.22 -26.73 -0.14 -1.66 16 20 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 21 C -0.12 -1.78 5.92 -26.73 -0.16 -1.94 16 22 C -0.11 -1.98 4.80 -26.74 -0.13 -2.11 16 23 C 0.10 1.93 1.33 -67.75 -0.09 1.84 16 24 H 0.05 1.07 6.98 -51.93 -0.36 0.70 16 25 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 1.13 7.59 -51.93 -0.39 0.74 16 28 H 0.06 1.24 6.06 -51.93 -0.31 0.92 16 29 H 0.05 1.06 4.00 -51.93 -0.21 0.85 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.07 1.30 5.91 -51.93 -0.31 0.99 16 32 H 0.04 0.87 6.60 -51.93 -0.34 0.53 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.05 0.77 8.14 -51.92 -0.42 0.34 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 1.52 6.26 -51.93 -0.32 1.20 16 LS Contribution 309.49 15.07 4.66 4.66 Total: -1.00 -28.11 309.49 -8.90 -37.01 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.93 Total: 1.88 kcal Atomic # 6 Polarization: -22.04 SS G_CDS: -1.38 Total: -23.42 kcal Atomic # 7 Polarization: -37.54 SS G_CDS: -0.07 Total: -37.61 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.20 Total: 17.47 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -28.11 -8.90 -37.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218008675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.515 kcal (2) G-P(sol) polarization free energy of solvation -28.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds