Wall clock time and date at job start Mon Mar 30 2020 07:23:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46796 * 2 1 4 4 H 1.09003 * 109.46543 * 56.00669 * 3 2 1 5 5 C 1.50698 * 109.46654 * 176.00174 * 3 2 1 6 6 H 1.08005 * 119.99623 * 114.49587 * 5 3 2 7 7 C 1.37874 * 120.00365 * 294.48716 * 5 3 2 8 8 N 1.31517 * 120.00004 * 180.02562 * 7 5 3 9 9 Si 1.86800 * 119.99998 * 0.02562 * 7 5 3 10 10 H 1.48498 * 109.46983 * 89.99811 * 9 7 5 11 11 H 1.48498 * 109.47072 * 209.99840 * 9 7 5 12 12 H 1.48500 * 109.47021 * 329.99728 * 9 7 5 13 13 N 1.46893 * 109.47316 * 296.00415 * 3 2 1 14 14 C 1.46868 * 111.00062 * 300.63216 * 13 3 2 15 15 C 1.53029 * 109.57133 * 174.28276 * 14 13 3 16 16 C 1.53145 * 109.32709 * 59.06336 * 15 14 13 17 17 C 1.53082 * 109.09265 * 302.40675 * 16 15 14 18 18 H 1.09001 * 109.49382 * 297.86883 * 17 16 15 19 19 C 1.52969 * 109.59720 * 177.73860 * 17 16 15 20 20 C 1.53023 * 109.39189 * 180.15545 * 19 17 16 21 21 C 1.52983 * 109.60790 * 59.79840 * 20 19 17 22 22 C 1.53022 * 109.53810 * 300.19872 * 21 20 19 23 23 C 1.46818 * 110.97848 * 176.52398 * 13 3 2 24 24 H 1.08999 * 109.37422 * 66.00552 * 23 13 3 25 25 H 1.09003 * 109.47317 * 175.15788 * 1 2 3 26 26 H 1.09000 * 109.47193 * 295.15323 * 1 2 3 27 27 H 1.08997 * 109.47550 * 55.15813 * 1 2 3 28 28 H 1.09007 * 109.46858 * 240.00848 * 2 1 3 29 29 H 1.08996 * 109.47370 * 120.00488 * 2 1 3 30 30 H 0.97004 * 119.99639 * 179.97438 * 8 7 5 31 31 H 1.09001 * 109.45002 * 54.26394 * 14 13 3 32 32 H 1.08993 * 109.45085 * 294.30773 * 14 13 3 33 33 H 1.09000 * 109.49275 * 179.02059 * 15 14 13 34 34 H 1.08996 * 109.49423 * 299.10688 * 15 14 13 35 35 H 1.09003 * 109.53158 * 62.29302 * 16 15 14 36 36 H 1.09004 * 109.53265 * 182.52235 * 16 15 14 37 37 H 1.08993 * 109.48550 * 300.03415 * 19 17 16 38 38 H 1.09002 * 109.48362 * 60.08937 * 19 17 16 39 39 H 1.09002 * 109.38882 * 299.77922 * 20 19 17 40 40 H 1.08997 * 109.45422 * 179.86055 * 20 19 17 41 41 H 1.09007 * 109.46248 * 180.17512 * 21 20 19 42 42 H 1.08998 * 109.45013 * 60.21055 * 21 20 19 43 43 H 1.08997 * 109.47886 * 299.94489 * 22 21 20 44 44 H 1.09000 * 109.49267 * 179.91844 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6192 1.9765 0.8521 5 6 3.5436 1.4437 0.0991 6 1 4.1387 1.8120 -0.7236 7 6 4.1598 0.9747 1.2398 8 7 5.4721 0.9762 1.3264 9 14 3.1306 0.3372 2.6624 10 1 2.8956 -1.1189 2.4898 11 1 3.8504 0.5744 3.9394 12 1 1.8277 1.0492 2.6889 13 7 1.6306 2.1066 -1.2447 14 6 2.1679 1.4042 -2.4173 15 6 1.6079 2.0352 -3.6940 16 6 1.9954 3.5162 -3.7394 17 6 1.4632 4.2118 -2.4839 18 1 0.3750 4.1506 -2.4678 19 6 1.8922 5.6801 -2.4900 20 6 1.3612 6.3698 -1.2315 21 6 1.9237 5.6757 0.0104 22 6 1.4964 4.2064 0.0133 23 6 2.0323 3.5188 -1.2437 24 1 3.1201 3.5853 -1.2579 25 1 -0.3634 -1.0240 -0.0867 26 1 -0.3633 0.4368 0.9302 27 1 -0.3634 0.5871 -0.8434 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 5.9055 0.6465 2.1292 31 1 1.8795 0.3539 -2.3749 32 1 3.2551 1.4823 -2.4205 33 1 2.0210 1.5243 -4.5637 34 1 0.5219 1.9431 -3.6991 35 1 3.0810 3.6079 -3.7746 36 1 1.5604 3.9797 -4.6250 37 1 2.9803 5.7409 -2.5045 38 1 1.4883 6.1732 -3.3743 39 1 0.2728 6.3111 -1.2185 40 1 1.6684 7.4155 -1.2335 41 1 1.5416 6.1668 0.9054 42 1 3.0119 5.7374 -0.0010 43 1 0.4083 4.1444 0.0258 44 1 1.8988 3.7123 0.8976 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218008675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:18 Heat of formation + Delta-G solvation = -40.057034 kcal Electronic energy + Delta-G solvation = -20638.036089 eV Core-core repulsion = 17974.110693 eV Total energy + Delta-G solvation = -2663.925396 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.03785 -37.77217 -35.78358 -34.17305 -33.08880 -30.94320 -30.18374 -28.83754 -25.43967 -24.42655 -23.67786 -22.95863 -20.94269 -20.66146 -20.50488 -18.57774 -17.36526 -16.30837 -16.11720 -15.72827 -15.27536 -15.13464 -14.85461 -14.68593 -14.37938 -14.17030 -13.86487 -13.61909 -13.31584 -13.10958 -12.88615 -12.71994 -12.54109 -12.36908 -12.12331 -11.97057 -11.93072 -11.66595 -11.53028 -11.45933 -11.43184 -11.27724 -11.15118 -10.74589 -10.58924 -10.44263 -8.83136 -8.31404 -6.33743 1.27053 1.31276 1.41486 2.29391 3.04413 3.26914 3.82279 3.90176 4.00861 4.19213 4.32679 4.39017 4.40190 4.43935 4.47398 4.52718 4.65071 4.68220 4.71816 4.74595 4.84041 4.93940 5.00992 5.03374 5.10698 5.12867 5.16454 5.19136 5.25698 5.30023 5.32353 5.33502 5.36488 5.44368 5.46898 5.52512 5.54048 5.60148 5.66837 5.76088 6.21022 6.47251 6.63011 6.75854 7.33995 8.85545 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.020581 B = 0.009114 C = 0.007941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.141374 B = 3071.292523 C = 3525.111228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.124 4.124 3 C 0.181 3.819 4 H 0.039 0.961 5 C -0.526 4.526 6 H 0.028 0.972 7 C 0.015 3.985 8 N -0.951 5.951 9 Si 0.938 3.062 10 H -0.267 1.267 11 H -0.299 1.299 12 H -0.243 1.243 13 N -0.510 5.510 14 C 0.058 3.942 15 C -0.107 4.107 16 C -0.112 4.112 17 C -0.072 4.072 18 H 0.083 0.917 19 C -0.110 4.110 20 C -0.109 4.109 21 C -0.116 4.116 22 C -0.108 4.108 23 C 0.102 3.898 24 H -0.002 1.002 25 H 0.056 0.944 26 H 0.043 0.957 27 H 0.070 0.930 28 H 0.054 0.946 29 H 0.032 0.968 30 H 0.262 0.738 31 H 0.068 0.932 32 H -0.003 1.003 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.036 0.964 36 H 0.086 0.914 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.072 0.928 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.608 6.895 -7.292 16.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.162 4.162 3 C 0.072 3.928 4 H 0.057 0.943 5 C -0.565 4.565 6 H 0.046 0.954 7 C -0.182 4.182 8 N -0.592 5.592 9 Si 0.764 3.236 10 H -0.193 1.193 11 H -0.226 1.226 12 H -0.167 1.167 13 N -0.233 5.233 14 C -0.071 4.071 15 C -0.145 4.145 16 C -0.150 4.150 17 C -0.091 4.091 18 H 0.101 0.899 19 C -0.148 4.148 20 C -0.147 4.147 21 C -0.154 4.154 22 C -0.146 4.146 23 C -0.007 4.007 24 H 0.016 0.984 25 H 0.075 0.925 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.073 0.927 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.015 0.985 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.055 0.945 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.104 0.896 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -12.992 6.830 -7.222 16.358 hybrid contribution 1.850 -0.722 1.166 2.303 sum -11.142 6.107 -6.057 14.076 Atomic orbital electron populations 1.21648 0.94239 1.01249 1.01999 1.21878 0.96762 0.97723 0.99811 1.19666 0.91062 0.91791 0.90251 0.94333 1.21847 0.92954 1.40517 1.01156 0.95389 1.25782 0.95580 0.95740 1.01114 1.70081 1.10384 1.49266 1.29447 0.85972 0.79899 0.79598 0.78102 1.19284 1.22611 1.16684 1.62398 1.57383 1.01607 1.01924 1.21995 0.95496 0.98308 0.91262 1.21569 1.01680 0.95607 0.95648 1.21614 0.99555 0.95617 0.98164 1.21179 1.00669 0.94324 0.92950 0.89899 1.21569 1.00001 0.94385 0.98842 1.21489 1.01003 0.98995 0.93178 1.21511 0.99751 0.94753 0.99395 1.21532 1.00756 0.95517 0.96763 1.21378 0.95227 0.88327 0.95740 0.98428 0.92461 0.93792 0.91077 0.92736 0.94951 0.92870 0.91390 0.98489 0.90996 0.90298 0.94476 0.89542 0.93902 0.89626 0.90720 0.90714 0.90992 0.94293 0.90919 0.94548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.48 9.85 71.98 0.71 -3.77 16 2 C -0.12 -5.22 4.75 30.60 0.15 -5.08 16 3 C 0.18 8.38 0.92 44.17 0.04 8.42 16 4 H 0.04 1.87 4.69 -2.39 -0.01 1.86 16 5 C -0.53 -29.97 7.69 25.60 0.20 -29.77 16 6 H 0.03 1.82 6.09 -2.91 -0.02 1.80 16 7 C 0.02 0.89 5.45 84.65 0.46 1.35 16 8 N -0.95 -60.63 13.96 21.45 0.30 -60.33 16 9 Si 0.94 45.64 24.68 68.60 1.69 47.33 16 10 H -0.27 -12.46 6.86 99.48 0.68 -11.78 16 11 H -0.30 -14.55 7.11 99.48 0.71 -13.85 16 12 H -0.24 -10.98 6.39 99.48 0.64 -10.34 16 13 N -0.51 -20.43 3.83 -850.49 -3.26 -23.69 16 14 C 0.06 2.23 4.80 86.32 0.41 2.64 16 15 C -0.11 -3.10 6.09 30.65 0.19 -2.91 16 16 C -0.11 -3.09 5.30 30.67 0.16 -2.93 16 17 C -0.07 -2.10 2.14 -10.76 -0.02 -2.12 16 18 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 19 C -0.11 -2.72 5.22 30.59 0.16 -2.56 16 20 C -0.11 -2.53 5.92 30.60 0.18 -2.35 16 21 C -0.12 -3.45 5.92 30.60 0.18 -3.27 16 22 C -0.11 -3.87 4.80 30.59 0.15 -3.72 16 23 C 0.10 3.91 1.33 44.94 0.06 3.97 16 24 H 0.00 -0.11 6.98 -2.39 -0.02 -0.13 16 25 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.07 2.28 7.59 -2.39 -0.02 2.26 16 28 H 0.05 2.31 6.06 -2.38 -0.01 2.29 16 29 H 0.03 1.45 4.00 -2.39 -0.01 1.44 16 30 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 31 H 0.07 2.59 5.91 -2.39 -0.01 2.58 16 32 H 0.00 -0.15 6.60 -2.39 -0.02 -0.17 16 33 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 34 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.45 16 41 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 42 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.04 1.55 6.26 -2.39 -0.01 1.53 16 Total: -1.00 -65.52 309.49 2.61 -62.91 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: 0.85 Total: 15.88 kcal Atomic # 6 Polarization: -45.13 SS G_CDS: 3.02 Total: -42.11 kcal Atomic # 7 Polarization: -81.06 SS G_CDS: -2.96 Total: -84.01 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.69 Total: 47.33 kcal Total: -65.52 2.61 -62.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218008675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.851 kcal (2) G-P(sol) polarization free energy of solvation -65.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds