Wall clock time and date at job start Mon Mar 30 2020 07:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46955 * 2 1 4 4 H 1.09000 * 109.46962 * 304.27218 * 3 2 1 5 5 C 1.50699 * 109.46890 * 184.26929 * 3 2 1 6 6 H 1.08002 * 119.99668 * 239.99383 * 5 3 2 7 7 C 1.37876 * 120.00014 * 60.00373 * 5 3 2 8 8 N 1.31512 * 120.00202 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99793 * 179.97438 * 7 5 3 10 10 H 1.48489 * 109.47445 * 90.00030 * 9 7 5 11 11 H 1.48499 * 109.47021 * 209.99918 * 9 7 5 12 12 H 1.48502 * 109.47315 * 329.99532 * 9 7 5 13 13 N 1.46904 * 109.46929 * 64.26806 * 3 2 1 14 14 C 1.46895 * 110.99735 * 205.85481 * 13 3 2 15 15 C 1.53002 * 109.46785 * 174.81844 * 14 13 3 16 16 H 1.08995 * 109.64324 * 54.57746 * 15 14 13 17 17 C 1.53027 * 109.64171 * 293.93959 * 15 14 13 18 18 C 1.50062 * 110.14714 * 190.88244 * 17 15 14 19 19 C 1.50703 * 117.96128 * 197.10790 * 18 17 15 20 20 C 1.29442 * 124.07735 * 17.13084 * 18 17 15 21 21 C 1.50064 * 124.07636 * 359.53125 * 20 18 17 22 22 H 1.09000 * 109.35811 * 137.33323 * 21 20 18 23 23 C 1.52998 * 109.24657 * 256.99153 * 21 20 18 24 24 C 1.53030 * 110.14631 * 17.13189 * 21 20 18 25 25 H 1.08998 * 109.47850 * 54.88419 * 1 2 3 26 26 H 1.09007 * 109.46873 * 174.88442 * 1 2 3 27 27 H 1.08996 * 109.47181 * 294.87942 * 1 2 3 28 28 H 1.09000 * 109.46809 * 240.00642 * 2 1 3 29 29 H 1.08994 * 109.47107 * 120.00170 * 2 1 3 30 30 H 0.96994 * 120.00124 * 179.97438 * 8 7 5 31 31 H 1.00898 * 110.99630 * 81.90228 * 13 3 2 32 32 H 1.09006 * 109.47336 * 294.81136 * 14 13 3 33 33 H 1.08994 * 109.47499 * 54.81490 * 14 13 3 34 34 H 1.08997 * 109.35746 * 311.08764 * 17 15 14 35 35 H 1.08999 * 109.35577 * 70.67327 * 17 15 14 36 36 H 1.08997 * 109.47093 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.47258 * 300.02212 * 19 18 17 38 38 H 1.09004 * 109.47134 * 60.02400 * 19 18 17 39 39 H 1.08000 * 117.95997 * 179.55072 * 20 18 17 40 40 H 1.09000 * 109.46953 * 180.61715 * 23 21 20 41 41 H 1.08994 * 109.47412 * 300.62376 * 23 21 20 42 42 H 1.09003 * 109.46965 * 60.62315 * 23 21 20 43 43 H 1.08996 * 109.64202 * 190.87806 * 24 21 20 44 44 H 1.09003 * 109.64197 * 70.24891 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6154 1.9780 -0.8492 5 6 3.5432 1.4439 -0.1058 6 1 4.1391 1.8919 0.6757 7 6 4.1578 0.8733 -1.2002 8 7 3.4322 0.3276 -2.1516 9 14 6.0212 0.8756 -1.3316 10 1 6.5636 -0.3530 -0.6983 11 1 6.4164 0.9107 -2.7626 12 1 6.5649 2.0712 -0.6385 13 7 1.6362 2.1046 1.2477 14 6 1.5398 3.5589 1.0645 15 6 0.9944 4.1988 2.3428 16 1 1.6104 3.9033 3.1921 17 6 -0.4504 3.7476 2.5680 18 6 -1.0827 4.5631 3.6574 19 6 -2.3406 4.0338 4.2967 20 6 -0.6153 5.6930 4.0820 21 6 0.6300 6.3406 3.5509 22 1 0.4560 7.4092 3.4251 23 6 1.7731 6.1264 4.5451 24 6 1.0093 5.7262 2.2017 25 1 -0.3635 0.5911 -0.8406 26 1 -0.3633 -1.0236 -0.0916 27 1 -0.3633 0.4323 0.9323 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.8645 -0.0734 -2.9217 31 1 2.2691 1.8760 1.9995 32 1 2.5284 3.9643 0.8486 33 1 0.8684 3.7769 0.2341 34 1 -1.0168 3.8759 1.6456 35 1 -0.4601 2.6954 2.8522 36 1 -2.6791 4.7303 5.0638 37 1 -3.1155 3.9244 3.5380 38 1 -2.1371 3.0640 4.7508 39 1 -1.1549 6.2012 4.8674 40 1 2.6769 6.6049 4.1680 41 1 1.5048 6.5633 5.5069 42 1 1.9519 5.0582 4.6685 43 1 2.0073 6.0580 1.9156 44 1 0.2872 6.0312 1.4442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234040029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:16 Heat of formation + Delta-G solvation = -24.146676 kcal Electronic energy + Delta-G solvation = -19197.040596 eV Core-core repulsion = 16533.805125 eV Total energy + Delta-G solvation = -2663.235472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.19404 -36.11302 -33.52539 -33.10294 -31.57255 -30.07592 -26.87298 -26.39605 -26.38472 -24.15188 -22.46470 -21.17312 -20.19774 -19.29704 -17.12561 -16.60451 -15.38817 -14.78093 -14.56374 -14.48415 -13.72974 -13.62381 -13.34108 -13.09530 -12.86813 -12.66453 -12.42892 -12.34802 -11.84883 -11.68367 -11.41921 -11.27499 -11.20665 -11.12922 -10.97470 -10.86223 -10.60673 -10.24481 -10.08590 -10.01132 -9.89000 -9.55830 -9.30350 -8.99972 -8.59237 -8.36025 -7.17347 -5.97309 -4.10296 2.41109 3.27599 3.34800 3.37330 4.40852 4.76591 4.88995 5.03689 5.21542 5.27223 5.35353 5.41053 5.54319 5.59996 5.73490 5.78396 5.83327 5.85402 5.95017 5.97715 6.09966 6.14422 6.16924 6.31266 6.37272 6.42822 6.47760 6.53083 6.55210 6.69351 6.75144 6.85356 6.90221 7.17892 7.20336 7.22607 7.48342 7.63283 7.80356 8.12952 8.19762 8.38145 8.71735 9.03567 9.57281 11.02522 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.005415 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.630408 B = 5169.513811 C = 6050.340526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.543 4.543 6 H 0.052 0.948 7 C 0.067 3.933 8 N -0.886 5.886 9 Si 0.888 3.112 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.687 5.687 14 C 0.073 3.927 15 C -0.081 4.081 16 H 0.068 0.932 17 C -0.067 4.067 18 C -0.115 4.115 19 C -0.121 4.121 20 C -0.167 4.167 21 C -0.056 4.056 22 H 0.069 0.931 23 C -0.142 4.142 24 C -0.111 4.111 25 H 0.035 0.965 26 H 0.023 0.977 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.029 0.971 30 H 0.261 0.739 31 H 0.325 0.675 32 H 0.026 0.974 33 H 0.058 0.942 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.094 0.906 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.500 8.869 10.503 15.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.144 4.144 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.583 4.583 6 H 0.070 0.930 7 C -0.135 4.135 8 N -0.524 5.524 9 Si 0.716 3.284 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.316 5.316 14 C -0.058 4.058 15 C -0.100 4.100 16 H 0.086 0.914 17 C -0.104 4.104 18 C -0.115 4.115 19 C -0.178 4.178 20 C -0.186 4.186 21 C -0.075 4.075 22 H 0.087 0.913 23 C -0.199 4.199 24 C -0.149 4.149 25 H 0.055 0.945 26 H 0.042 0.958 27 H 0.065 0.935 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.071 0.929 31 H 0.141 0.859 32 H 0.044 0.956 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.112 0.888 40 H 0.072 0.928 41 H 0.068 0.932 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.174 8.663 10.206 15.685 hybrid contribution 2.007 0.237 -0.197 2.030 sum -6.167 8.900 10.009 14.745 Atomic orbital electron populations 1.21680 0.99041 0.98155 1.00341 1.21491 0.92036 0.99335 1.01562 1.19133 0.92570 0.91114 0.86478 0.95188 1.21880 0.92826 1.37825 1.05739 0.92956 1.24929 0.97872 0.95057 0.95675 1.69877 1.34820 1.38140 1.09559 0.86671 0.86226 0.78357 0.77177 1.20668 1.21229 1.20124 1.60875 1.55007 1.06162 1.09558 1.21798 0.98477 0.90068 0.95410 1.21240 0.96206 0.93712 0.98871 0.91358 1.20303 0.94775 0.99294 0.96016 1.21119 0.96684 0.95851 0.97857 1.20966 0.95795 1.01140 0.99867 1.21816 0.98196 0.97060 1.01478 1.19942 0.93364 0.98916 0.95246 0.91297 1.21820 0.97440 1.02232 0.98395 1.21700 1.01275 0.95861 0.96101 0.94541 0.95801 0.93454 0.89311 0.95177 0.92933 0.85917 0.95617 0.92371 0.91298 0.90101 0.92724 0.91899 0.91735 0.88772 0.92757 0.93205 0.92204 0.91865 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.78 9.73 37.16 0.36 -2.42 16 2 C -0.11 -2.53 5.45 -26.73 -0.15 -2.68 16 3 C 0.22 5.29 1.98 -68.86 -0.14 5.15 16 4 H 0.03 0.83 7.70 -51.93 -0.40 0.43 16 5 C -0.54 -14.63 8.47 -34.44 -0.29 -14.92 16 6 H 0.05 1.41 7.73 -52.49 -0.41 1.00 16 7 C 0.07 1.84 5.29 -17.82 -0.09 1.74 16 8 N -0.89 -25.09 11.29 55.43 0.63 -24.47 16 9 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 13 N -0.69 -14.09 5.44 -107.95 -0.59 -14.68 16 14 C 0.07 1.34 4.90 -3.83 -0.02 1.32 16 15 C -0.08 -1.22 2.38 -90.40 -0.21 -1.43 16 16 H 0.07 1.05 6.43 -51.93 -0.33 0.72 16 17 C -0.07 -0.96 4.92 -28.18 -0.14 -1.10 16 18 C -0.12 -1.45 5.84 -100.94 -0.59 -2.04 16 19 C -0.12 -1.29 9.98 36.01 0.36 -0.93 16 20 C -0.17 -2.01 8.64 -35.90 -0.31 -2.32 16 21 C -0.06 -0.66 3.13 -92.06 -0.29 -0.95 16 22 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 23 C -0.14 -1.57 8.97 37.16 0.33 -1.24 16 24 C -0.11 -1.48 4.74 -26.51 -0.13 -1.60 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.92 7.88 -51.93 -0.41 0.51 16 28 H 0.09 2.38 5.97 -51.93 -0.31 2.07 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.33 6.68 8.45 -39.29 -0.33 6.35 16 32 H 0.03 0.52 8.11 -51.93 -0.42 0.09 16 33 H 0.06 1.12 7.87 -51.93 -0.41 0.71 16 34 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 35 H 0.08 1.24 8.08 -51.93 -0.42 0.82 16 36 H 0.05 0.51 7.56 -51.93 -0.39 0.12 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 1.02 7.56 -52.49 -0.40 0.62 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.72 6.55 -51.93 -0.34 0.38 16 43 H 0.06 0.84 8.11 -51.93 -0.42 0.42 16 44 H 0.06 0.82 8.12 -51.93 -0.42 0.40 16 LS Contribution 339.64 15.07 5.12 5.12 Total: -1.00 -26.96 339.64 -9.51 -36.47 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: -8.35 Total: 4.80 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -1.30 Total: -23.42 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: 0.04 Total: -39.14 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.96 -9.51 -36.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234040029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.326 kcal (2) G-P(sol) polarization free energy of solvation -26.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds