Wall clock time and date at job start Mon Mar 30 2020 07:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46955 * 2 1 4 4 H 1.09000 * 109.46962 * 304.27218 * 3 2 1 5 5 C 1.50699 * 109.46890 * 184.26929 * 3 2 1 6 6 H 1.08002 * 119.99668 * 239.99383 * 5 3 2 7 7 C 1.37876 * 120.00014 * 60.00373 * 5 3 2 8 8 N 1.31512 * 120.00202 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99793 * 179.97438 * 7 5 3 10 10 H 1.48489 * 109.47445 * 90.00030 * 9 7 5 11 11 H 1.48499 * 109.47021 * 209.99918 * 9 7 5 12 12 H 1.48502 * 109.47315 * 329.99532 * 9 7 5 13 13 N 1.46904 * 109.46929 * 64.26806 * 3 2 1 14 14 C 1.46895 * 110.99735 * 205.85481 * 13 3 2 15 15 C 1.53002 * 109.46785 * 174.81844 * 14 13 3 16 16 H 1.08995 * 109.64324 * 54.57746 * 15 14 13 17 17 C 1.53027 * 109.64171 * 293.93959 * 15 14 13 18 18 C 1.50062 * 110.14714 * 190.88244 * 17 15 14 19 19 C 1.50703 * 117.96128 * 197.10790 * 18 17 15 20 20 C 1.29442 * 124.07735 * 17.13084 * 18 17 15 21 21 C 1.50064 * 124.07636 * 359.53125 * 20 18 17 22 22 H 1.09000 * 109.35811 * 137.33323 * 21 20 18 23 23 C 1.52998 * 109.24657 * 256.99153 * 21 20 18 24 24 C 1.53030 * 110.14631 * 17.13189 * 21 20 18 25 25 H 1.08998 * 109.47850 * 54.88419 * 1 2 3 26 26 H 1.09007 * 109.46873 * 174.88442 * 1 2 3 27 27 H 1.08996 * 109.47181 * 294.87942 * 1 2 3 28 28 H 1.09000 * 109.46809 * 240.00642 * 2 1 3 29 29 H 1.08994 * 109.47107 * 120.00170 * 2 1 3 30 30 H 0.96994 * 120.00124 * 179.97438 * 8 7 5 31 31 H 1.00898 * 110.99630 * 81.90228 * 13 3 2 32 32 H 1.09006 * 109.47336 * 294.81136 * 14 13 3 33 33 H 1.08994 * 109.47499 * 54.81490 * 14 13 3 34 34 H 1.08997 * 109.35746 * 311.08764 * 17 15 14 35 35 H 1.08999 * 109.35577 * 70.67327 * 17 15 14 36 36 H 1.08997 * 109.47093 * 180.02562 * 19 18 17 37 37 H 1.08998 * 109.47258 * 300.02212 * 19 18 17 38 38 H 1.09004 * 109.47134 * 60.02400 * 19 18 17 39 39 H 1.08000 * 117.95997 * 179.55072 * 20 18 17 40 40 H 1.09000 * 109.46953 * 180.61715 * 23 21 20 41 41 H 1.08994 * 109.47412 * 300.62376 * 23 21 20 42 42 H 1.09003 * 109.46965 * 60.62315 * 23 21 20 43 43 H 1.08996 * 109.64202 * 190.87806 * 24 21 20 44 44 H 1.09003 * 109.64197 * 70.24891 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6154 1.9780 -0.8492 5 6 3.5432 1.4439 -0.1058 6 1 4.1391 1.8919 0.6757 7 6 4.1578 0.8733 -1.2002 8 7 3.4322 0.3276 -2.1516 9 14 6.0212 0.8756 -1.3316 10 1 6.5636 -0.3530 -0.6983 11 1 6.4164 0.9107 -2.7626 12 1 6.5649 2.0712 -0.6385 13 7 1.6362 2.1046 1.2477 14 6 1.5398 3.5589 1.0645 15 6 0.9944 4.1988 2.3428 16 1 1.6104 3.9033 3.1921 17 6 -0.4504 3.7476 2.5680 18 6 -1.0827 4.5631 3.6574 19 6 -2.3406 4.0338 4.2967 20 6 -0.6153 5.6930 4.0820 21 6 0.6300 6.3406 3.5509 22 1 0.4560 7.4092 3.4251 23 6 1.7731 6.1264 4.5451 24 6 1.0093 5.7262 2.2017 25 1 -0.3635 0.5911 -0.8406 26 1 -0.3633 -1.0236 -0.0916 27 1 -0.3633 0.4323 0.9323 28 1 1.8933 -0.5137 -0.8901 29 1 1.8933 -0.5138 0.8899 30 1 3.8645 -0.0734 -2.9217 31 1 2.2691 1.8760 1.9995 32 1 2.5284 3.9643 0.8486 33 1 0.8684 3.7769 0.2341 34 1 -1.0168 3.8759 1.6456 35 1 -0.4601 2.6954 2.8522 36 1 -2.6791 4.7303 5.0638 37 1 -3.1155 3.9244 3.5380 38 1 -2.1371 3.0640 4.7508 39 1 -1.1549 6.2012 4.8674 40 1 2.6769 6.6049 4.1680 41 1 1.5048 6.5633 5.5069 42 1 1.9519 5.0582 4.6685 43 1 2.0073 6.0580 1.9156 44 1 0.2872 6.0312 1.4442 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234040029.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:15 Heat of formation + Delta-G solvation = -37.149587 kcal Electronic energy + Delta-G solvation = -19197.604445 eV Core-core repulsion = 16533.805125 eV Total energy + Delta-G solvation = -2663.799320 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.30089 -37.88566 -34.98088 -34.24381 -33.43896 -31.61848 -28.42417 -27.60221 -27.42703 -25.76986 -24.22041 -22.30115 -21.65042 -21.00165 -18.72364 -18.11970 -16.82663 -16.39976 -16.02127 -15.68274 -15.36250 -14.82914 -14.62309 -14.50579 -14.24395 -14.09796 -13.48710 -13.39652 -13.25800 -13.19100 -13.00910 -12.92115 -12.75805 -12.57153 -12.34536 -12.24432 -12.10169 -12.01362 -11.59233 -11.51178 -11.29210 -11.07107 -10.97291 -10.76177 -10.46260 -9.54743 -9.00083 -8.04892 -6.27723 1.37538 1.38939 1.46169 1.47818 2.39740 3.14075 3.61665 3.81549 3.88718 4.06421 4.29473 4.40338 4.46350 4.56933 4.62604 4.65923 4.73002 4.77267 4.80845 4.82744 4.93566 4.96218 4.98066 5.00916 5.04249 5.10722 5.15516 5.20019 5.25298 5.33824 5.40822 5.43661 5.47245 5.52768 5.61425 5.65013 5.78778 5.90652 6.12185 6.21677 6.25673 6.40906 6.84071 7.03694 7.43955 8.91146 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024414 B = 0.005415 C = 0.004627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.630408 B = 5169.513811 C = 6050.340526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.222 3.778 4 H -0.005 1.005 5 C -0.559 4.559 6 H 0.048 0.952 7 C 0.020 3.980 8 N -0.911 5.911 9 Si 0.950 3.050 10 H -0.275 1.275 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.674 5.674 14 C 0.078 3.922 15 C -0.071 4.071 16 H 0.067 0.933 17 C -0.062 4.062 18 C -0.130 4.130 19 C -0.118 4.118 20 C -0.162 4.162 21 C -0.056 4.056 22 H 0.086 0.914 23 C -0.140 4.140 24 C -0.110 4.110 25 H 0.028 0.972 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.327 0.673 32 H 0.006 0.994 33 H 0.046 0.954 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.114 0.886 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.045 0.955 43 H 0.061 0.939 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 9.837 12.129 17.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 C 0.113 3.887 4 H 0.013 0.987 5 C -0.598 4.598 6 H 0.067 0.933 7 C -0.180 4.180 8 N -0.550 5.550 9 Si 0.776 3.224 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.198 1.198 13 N -0.303 5.303 14 C -0.052 4.052 15 C -0.089 4.089 16 H 0.085 0.915 17 C -0.099 4.099 18 C -0.130 4.130 19 C -0.175 4.175 20 C -0.180 4.180 21 C -0.074 4.074 22 H 0.104 0.896 23 C -0.197 4.197 24 C -0.148 4.148 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.143 0.857 32 H 0.025 0.975 33 H 0.065 0.935 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.082 0.918 39 H 0.132 0.868 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.065 0.935 43 H 0.079 0.921 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.435 9.638 11.845 17.446 hybrid contribution 2.088 -0.036 -0.720 2.209 sum -6.347 9.602 11.125 16.008 Atomic orbital electron populations 1.21535 0.96380 0.99433 1.00615 1.21348 0.94395 0.98349 0.99930 1.18918 0.91409 0.91506 0.86879 0.98663 1.22176 0.94121 1.37750 1.05781 0.93348 1.25664 1.02142 0.94787 0.95427 1.70007 1.36445 1.38651 1.09945 0.85684 0.81081 0.78455 0.77159 1.20040 1.20912 1.19770 1.60813 1.54356 1.07302 1.07805 1.21804 0.97364 0.88855 0.97194 1.21107 0.96528 0.94830 0.96480 0.91479 1.20182 0.94145 0.99035 0.96509 1.21124 0.97809 0.96198 0.97880 1.20955 0.94848 1.01484 1.00200 1.22020 0.97959 0.96646 1.01391 1.19980 0.93622 0.99690 0.94106 0.89605 1.21797 0.97374 1.01492 0.99030 1.21684 1.01251 0.94373 0.97476 0.95279 0.93804 0.92269 0.92265 0.95329 0.92908 0.85689 0.97535 0.93540 0.92330 0.91344 0.91101 0.91711 0.91755 0.86813 0.92394 0.91623 0.93549 0.92053 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.99 9.73 71.98 0.70 -4.29 16 2 C -0.10 -4.94 5.45 30.60 0.17 -4.77 16 3 C 0.22 11.20 1.98 44.17 0.09 11.29 16 4 H 0.00 -0.26 7.70 -2.39 -0.02 -0.28 16 5 C -0.56 -30.65 8.47 25.60 0.22 -30.43 16 6 H 0.05 2.63 7.73 -2.91 -0.02 2.61 16 7 C 0.02 1.09 5.29 84.65 0.45 1.54 16 8 N -0.91 -52.64 11.29 21.45 0.24 -52.40 16 9 Si 0.95 43.74 29.54 68.60 2.03 45.77 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 13 N -0.67 -28.12 5.44 -495.44 -2.70 -30.82 16 14 C 0.08 2.94 4.90 86.30 0.42 3.36 16 15 C -0.07 -2.09 2.38 -10.65 -0.03 -2.12 16 16 H 0.07 2.02 6.43 -2.39 -0.02 2.01 16 17 C -0.06 -1.73 4.92 29.66 0.15 -1.59 16 18 C -0.13 -3.04 5.84 -15.10 -0.09 -3.13 16 19 C -0.12 -2.27 9.98 71.24 0.71 -1.56 16 20 C -0.16 -3.45 8.64 27.04 0.23 -3.22 16 21 C -0.06 -1.17 3.13 -11.73 -0.04 -1.21 16 22 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 23 C -0.14 -2.78 8.97 71.98 0.65 -2.14 16 24 C -0.11 -2.80 4.74 30.74 0.15 -2.66 16 25 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.06 2.26 7.88 -2.39 -0.02 2.24 16 28 H 0.06 3.25 5.97 -2.39 -0.01 3.24 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 31 H 0.33 13.55 8.45 -89.70 -0.76 12.80 16 32 H 0.01 0.26 8.11 -2.38 -0.02 0.25 16 33 H 0.05 1.85 7.87 -2.39 -0.02 1.83 16 34 H 0.06 1.74 8.06 -2.39 -0.02 1.73 16 35 H 0.07 2.07 8.08 -2.39 -0.02 2.05 16 36 H 0.07 1.12 7.56 -2.39 -0.02 1.10 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 39 H 0.11 2.02 7.56 -2.91 -0.02 2.00 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.04 6.55 -2.39 -0.02 1.03 16 43 H 0.06 1.58 8.11 -2.39 -0.02 1.56 16 44 H 0.06 1.54 8.12 -2.39 -0.02 1.52 16 Total: -1.00 -57.77 339.64 3.52 -54.25 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: 0.18 Total: 24.11 kcal Atomic # 6 Polarization: -44.69 SS G_CDS: 3.77 Total: -40.92 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -2.45 Total: -83.21 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Total: -57.77 3.52 -54.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234040029.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.096 kcal (2) G-P(sol) polarization free energy of solvation -57.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds