Wall clock time and date at job start Mon Mar 30 2020 07:23:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47255 * 2 1 4 4 H 1.09003 * 109.47125 * 56.27069 * 3 2 1 5 5 C 1.50694 * 109.47210 * 176.27583 * 3 2 1 6 6 H 1.08006 * 119.99797 * 114.52293 * 5 3 2 7 7 C 1.37872 * 120.00222 * 294.51946 * 5 3 2 8 8 N 1.31520 * 119.99949 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00168 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47349 * 90.00410 * 9 7 5 11 11 H 1.48510 * 109.46906 * 210.00304 * 9 7 5 12 12 H 1.48501 * 109.47249 * 330.00171 * 9 7 5 13 13 N 1.46902 * 109.46665 * 296.27631 * 3 2 1 14 14 C 1.47894 * 111.00160 * 299.26053 * 13 3 2 15 15 C 1.53998 * 107.06230 * 214.15850 * 14 13 3 16 16 C 1.54597 * 105.13681 * 1.22707 * 15 14 13 17 17 C 1.48537 * 110.99884 * 181.86756 * 13 3 2 18 18 H 1.09003 * 110.66621 * 41.28244 * 17 13 3 19 19 C 1.53005 * 110.80954 * 278.22246 * 17 13 3 20 20 C 1.54268 * 110.03197 * 306.01526 * 19 17 13 21 21 C 1.54887 * 104.19467 * 217.10437 * 20 19 17 22 22 C 1.54895 * 102.74807 * 37.94414 * 21 20 19 23 23 C 1.53875 * 110.03212 * 188.84786 * 19 17 13 24 24 H 1.09001 * 109.47481 * 185.05991 * 1 2 3 25 25 H 1.08997 * 109.47309 * 305.06207 * 1 2 3 26 26 H 1.09003 * 109.47188 * 65.05706 * 1 2 3 27 27 H 1.08992 * 109.47170 * 239.99980 * 2 1 3 28 28 H 1.08999 * 109.47159 * 119.99386 * 2 1 3 29 29 H 0.96997 * 119.99948 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.92015 * 94.80563 * 14 13 3 31 31 H 1.09005 * 109.91722 * 333.50966 * 14 13 3 32 32 H 1.08999 * 110.30889 * 120.13839 * 15 14 13 33 33 H 1.08996 * 110.31325 * 242.30848 * 15 14 13 34 34 H 1.09001 * 110.72348 * 140.31624 * 16 15 14 35 35 H 1.09004 * 110.72326 * 263.59615 * 16 15 14 36 36 H 1.09002 * 110.01764 * 67.45844 * 19 17 13 37 37 H 1.08998 * 110.48461 * 335.78554 * 20 19 17 38 38 H 1.09003 * 110.48536 * 98.42718 * 20 19 17 39 39 H 1.09000 * 110.75471 * 279.63016 * 21 20 19 40 40 H 1.08995 * 110.75690 * 156.25738 * 21 20 19 41 41 H 1.09007 * 110.48335 * 203.37739 * 22 21 20 42 42 H 1.08998 * 110.48449 * 80.73728 * 22 21 20 43 43 H 1.08998 * 110.02965 * 238.56830 * 23 19 17 44 44 H 1.08999 * 110.03401 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6231 1.9753 0.8547 5 6 3.5441 1.4435 0.0923 6 1 4.1355 1.8136 -0.7323 7 6 4.1654 0.9721 1.2292 8 7 3.4453 0.5211 2.2331 9 14 6.0298 0.9740 1.3439 10 1 6.4887 2.2604 1.9268 11 1 6.4737 -0.1481 2.2097 12 1 6.6095 0.8110 -0.0136 13 7 1.6251 2.1085 -1.2419 14 6 2.1877 1.4220 -2.4249 15 6 2.4817 2.5057 -3.4788 16 6 2.0819 3.8401 -2.8082 17 6 2.1414 3.5001 -1.2978 18 1 3.1678 3.5446 -0.9335 19 6 1.2444 4.4453 -0.4958 20 6 -0.2172 4.3184 -0.9729 21 6 -0.7680 5.7641 -0.8980 22 6 0.4404 6.6148 -1.3622 23 6 1.6624 5.9053 -0.7433 24 1 -0.3634 -1.0236 0.0906 25 1 -0.3634 0.5903 0.8411 26 1 -0.3634 0.4334 -0.9318 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8824 0.1891 3.0329 30 1 1.4646 0.7077 -2.8186 31 1 3.1101 0.9089 -2.1528 32 1 3.5424 2.5115 -3.7299 33 1 1.8814 2.3369 -4.3728 34 1 2.7964 4.6253 -3.0553 35 1 1.0722 4.1305 -3.0987 36 1 1.3126 4.2124 0.5668 37 1 -0.2532 3.9491 -1.9978 38 1 -0.7794 3.6611 -0.3095 39 1 -1.0492 6.0178 0.1241 40 1 -1.6127 5.8912 -1.5750 41 1 0.3580 7.6334 -0.9828 42 1 0.5105 6.6163 -2.4499 43 1 1.9327 6.3812 0.1994 44 1 2.5041 5.9406 -1.4350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000251322883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:14 Heat of formation + Delta-G solvation = -22.490292 kcal Electronic energy + Delta-G solvation = -20376.164695 eV Core-core repulsion = 17713.001049 eV Total energy + Delta-G solvation = -2663.163645 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.24473 -36.74607 -33.96554 -31.65539 -30.08124 -29.37275 -28.22790 -26.14805 -25.63368 -23.01368 -21.10921 -20.94990 -20.21621 -18.69819 -18.10779 -16.31580 -15.51858 -15.35868 -14.82887 -14.33856 -13.77425 -13.27305 -13.09790 -13.01121 -12.80048 -12.47772 -12.06372 -11.69336 -11.24742 -10.94785 -10.91004 -10.86094 -10.80718 -10.67283 -10.56505 -10.45987 -10.41574 -10.21998 -10.19700 -9.90020 -9.70162 -9.62582 -9.47497 -9.37063 -9.01748 -8.33895 -7.08712 -5.97733 -4.08522 3.26752 3.34366 3.36820 4.41009 4.91084 5.08081 5.12260 5.27699 5.32391 5.44705 5.50462 5.73107 5.85362 5.94047 6.00191 6.03621 6.08576 6.13369 6.21686 6.26728 6.29670 6.36287 6.42167 6.44279 6.46736 6.51830 6.66656 6.67948 6.75332 6.80894 6.85676 6.95679 7.02462 7.09311 7.15087 7.21588 7.36198 7.65742 7.75192 8.00228 8.20666 8.32009 8.48534 9.03130 9.57741 11.03283 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.019684 B = 0.007968 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.103906 B = 3513.124410 C = 3752.873232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C 0.207 3.793 4 H 0.043 0.957 5 C -0.540 4.540 6 H 0.056 0.944 7 C 0.069 3.931 8 N -0.885 5.885 9 Si 0.883 3.117 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.507 5.507 14 C 0.039 3.961 15 C -0.131 4.131 16 C -0.120 4.120 17 C 0.077 3.923 18 H 0.065 0.935 19 C -0.072 4.072 20 C -0.101 4.101 21 C -0.130 4.130 22 C -0.121 4.121 23 C -0.120 4.120 24 H 0.023 0.977 25 H 0.040 0.960 26 H 0.046 0.954 27 H 0.032 0.968 28 H 0.080 0.920 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.059 0.941 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 7.312 -7.330 11.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.100 3.900 4 H 0.060 0.940 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.134 4.134 8 N -0.523 5.523 9 Si 0.711 3.289 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.231 5.231 14 C -0.089 4.089 15 C -0.169 4.169 16 C -0.158 4.158 17 C -0.031 4.031 18 H 0.083 0.917 19 C -0.091 4.091 20 C -0.139 4.139 21 C -0.167 4.167 22 C -0.158 4.158 23 C -0.158 4.158 24 H 0.043 0.957 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.098 0.902 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.689 7.190 -7.134 11.617 hybrid contribution 2.121 -0.139 0.286 2.144 sum -3.568 7.051 -6.848 10.457 Atomic orbital electron populations 1.21690 0.98743 0.98284 1.00630 1.21531 0.92347 0.99410 1.01214 1.19375 0.92683 0.90802 0.87189 0.93952 1.21707 0.92839 1.42004 1.01327 0.92586 1.24905 0.97607 0.95110 0.95766 1.69916 1.34842 1.41878 1.05657 0.86744 0.86597 0.77617 0.77933 1.20774 1.21242 1.20098 1.65019 1.54007 1.00754 1.03281 1.22686 0.99067 0.96017 0.91140 1.22388 1.00029 0.96131 0.98328 1.22586 1.00731 0.96228 0.96290 1.22636 0.97611 0.90065 0.92826 0.91727 1.21542 0.94744 0.92788 1.00007 1.22257 0.95188 0.94521 1.01909 1.22565 0.97037 0.96778 1.00363 1.22325 0.95449 0.98082 0.99986 1.22194 0.97646 0.95753 1.00175 0.95743 0.94111 0.93468 0.94950 0.90189 0.92981 0.92601 0.92311 0.92714 0.92627 0.92725 0.91250 0.91240 0.91056 0.92102 0.92196 0.92518 0.92692 0.92160 0.92541 0.91970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.73 37.16 0.36 -2.40 16 2 C -0.11 -2.50 5.14 -26.73 -0.14 -2.64 16 3 C 0.21 4.97 1.67 -68.86 -0.12 4.85 16 4 H 0.04 1.15 7.63 -51.93 -0.40 0.76 16 5 C -0.54 -14.15 6.26 -34.45 -0.22 -14.37 16 6 H 0.06 1.49 6.06 -52.48 -0.32 1.17 16 7 C 0.07 1.86 5.31 -17.82 -0.09 1.76 16 8 N -0.88 -24.84 11.72 55.43 0.65 -24.19 16 9 Si 0.88 21.09 29.54 -169.99 -5.02 16.07 16 10 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.51 -10.36 4.01 -216.09 -0.87 -11.23 16 14 C 0.04 0.76 4.99 -2.76 -0.01 0.75 16 15 C -0.13 -2.13 6.93 -25.37 -0.18 -2.30 16 16 C -0.12 -1.92 5.44 -24.87 -0.14 -2.06 16 17 C 0.08 1.46 1.83 -65.78 -0.12 1.34 16 18 H 0.06 1.42 6.23 -51.93 -0.32 1.10 16 19 C -0.07 -1.23 2.91 -89.50 -0.26 -1.49 16 20 C -0.10 -1.58 5.65 -25.07 -0.14 -1.72 16 21 C -0.13 -1.69 6.91 -24.74 -0.17 -1.86 16 22 C -0.12 -1.51 6.83 -25.07 -0.17 -1.68 16 23 C -0.12 -1.74 6.04 -25.61 -0.15 -1.89 16 24 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 27 H 0.03 0.75 6.97 -51.93 -0.36 0.38 16 28 H 0.08 2.10 6.44 -51.93 -0.33 1.77 16 29 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.06 1.05 8.12 -51.93 -0.42 0.62 16 31 H 0.06 1.28 5.98 -51.93 -0.31 0.97 16 32 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.81 7.48 -51.93 -0.39 0.42 16 35 H 0.07 1.05 5.96 -51.93 -0.31 0.74 16 36 H 0.07 1.37 7.71 -51.93 -0.40 0.97 16 37 H 0.07 1.13 5.85 -51.93 -0.30 0.83 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.89 6.61 -51.93 -0.34 0.55 16 LS Contribution 320.82 15.07 4.83 4.83 Total: -1.00 -26.40 320.82 -9.93 -36.33 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -7.98 Total: 1.88 kcal Atomic # 6 Polarization: -22.16 SS G_CDS: -1.54 Total: -23.71 kcal Atomic # 7 Polarization: -35.20 SS G_CDS: -0.22 Total: -35.42 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -26.40 -9.93 -36.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251322883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.844 kcal (2) G-P(sol) polarization free energy of solvation -26.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds