Wall clock time and date at job start Mon Mar 30 2020 07:23:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47255 * 2 1 4 4 H 1.09003 * 109.47125 * 56.27069 * 3 2 1 5 5 C 1.50694 * 109.47210 * 176.27583 * 3 2 1 6 6 H 1.08006 * 119.99797 * 114.52293 * 5 3 2 7 7 C 1.37872 * 120.00222 * 294.51946 * 5 3 2 8 8 N 1.31520 * 119.99949 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00168 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47349 * 90.00410 * 9 7 5 11 11 H 1.48510 * 109.46906 * 210.00304 * 9 7 5 12 12 H 1.48501 * 109.47249 * 330.00171 * 9 7 5 13 13 N 1.46902 * 109.46665 * 296.27631 * 3 2 1 14 14 C 1.47894 * 111.00160 * 299.26053 * 13 3 2 15 15 C 1.53998 * 107.06230 * 214.15850 * 14 13 3 16 16 C 1.54597 * 105.13681 * 1.22707 * 15 14 13 17 17 C 1.48537 * 110.99884 * 181.86756 * 13 3 2 18 18 H 1.09003 * 110.66621 * 41.28244 * 17 13 3 19 19 C 1.53005 * 110.80954 * 278.22246 * 17 13 3 20 20 C 1.54268 * 110.03197 * 306.01526 * 19 17 13 21 21 C 1.54887 * 104.19467 * 217.10437 * 20 19 17 22 22 C 1.54895 * 102.74807 * 37.94414 * 21 20 19 23 23 C 1.53875 * 110.03212 * 188.84786 * 19 17 13 24 24 H 1.09001 * 109.47481 * 185.05991 * 1 2 3 25 25 H 1.08997 * 109.47309 * 305.06207 * 1 2 3 26 26 H 1.09003 * 109.47188 * 65.05706 * 1 2 3 27 27 H 1.08992 * 109.47170 * 239.99980 * 2 1 3 28 28 H 1.08999 * 109.47159 * 119.99386 * 2 1 3 29 29 H 0.96997 * 119.99948 * 179.97438 * 8 7 5 30 30 H 1.09003 * 109.92015 * 94.80563 * 14 13 3 31 31 H 1.09005 * 109.91722 * 333.50966 * 14 13 3 32 32 H 1.08999 * 110.30889 * 120.13839 * 15 14 13 33 33 H 1.08996 * 110.31325 * 242.30848 * 15 14 13 34 34 H 1.09001 * 110.72348 * 140.31624 * 16 15 14 35 35 H 1.09004 * 110.72326 * 263.59615 * 16 15 14 36 36 H 1.09002 * 110.01764 * 67.45844 * 19 17 13 37 37 H 1.08998 * 110.48461 * 335.78554 * 20 19 17 38 38 H 1.09003 * 110.48536 * 98.42718 * 20 19 17 39 39 H 1.09000 * 110.75471 * 279.63016 * 21 20 19 40 40 H 1.08995 * 110.75690 * 156.25738 * 21 20 19 41 41 H 1.09007 * 110.48335 * 203.37739 * 22 21 20 42 42 H 1.08998 * 110.48449 * 80.73728 * 22 21 20 43 43 H 1.08998 * 110.02965 * 238.56830 * 23 19 17 44 44 H 1.08999 * 110.03401 * 0.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6231 1.9753 0.8547 5 6 3.5441 1.4435 0.0923 6 1 4.1355 1.8136 -0.7323 7 6 4.1654 0.9721 1.2292 8 7 3.4453 0.5211 2.2331 9 14 6.0298 0.9740 1.3439 10 1 6.4887 2.2604 1.9268 11 1 6.4737 -0.1481 2.2097 12 1 6.6095 0.8110 -0.0136 13 7 1.6251 2.1085 -1.2419 14 6 2.1877 1.4220 -2.4249 15 6 2.4817 2.5057 -3.4788 16 6 2.0819 3.8401 -2.8082 17 6 2.1414 3.5001 -1.2978 18 1 3.1678 3.5446 -0.9335 19 6 1.2444 4.4453 -0.4958 20 6 -0.2172 4.3184 -0.9729 21 6 -0.7680 5.7641 -0.8980 22 6 0.4404 6.6148 -1.3622 23 6 1.6624 5.9053 -0.7433 24 1 -0.3634 -1.0236 0.0906 25 1 -0.3634 0.5903 0.8411 26 1 -0.3634 0.4334 -0.9318 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5137 0.8900 29 1 3.8824 0.1891 3.0329 30 1 1.4646 0.7077 -2.8186 31 1 3.1101 0.9089 -2.1528 32 1 3.5424 2.5115 -3.7299 33 1 1.8814 2.3369 -4.3728 34 1 2.7964 4.6253 -3.0553 35 1 1.0722 4.1305 -3.0987 36 1 1.3126 4.2124 0.5668 37 1 -0.2532 3.9491 -1.9978 38 1 -0.7794 3.6611 -0.3095 39 1 -1.0492 6.0178 0.1241 40 1 -1.6127 5.8912 -1.5750 41 1 0.3580 7.6334 -0.9828 42 1 0.5105 6.6163 -2.4499 43 1 1.9327 6.3812 0.1994 44 1 2.5041 5.9406 -1.4350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251322883.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:23:13 Heat of formation + Delta-G solvation = -35.520481 kcal Electronic energy + Delta-G solvation = -20376.729726 eV Core-core repulsion = 17713.001049 eV Total energy + Delta-G solvation = -2663.728677 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.72864 -38.15427 -35.72620 -33.64516 -31.49090 -30.92293 -29.41345 -28.03875 -27.04654 -24.89213 -22.65647 -22.42699 -21.31935 -20.46195 -19.60187 -18.21111 -17.23888 -16.68585 -16.23372 -16.08061 -15.12922 -14.95237 -14.79170 -14.44980 -14.30054 -13.99666 -13.65017 -13.38110 -13.09407 -12.78656 -12.56537 -12.37202 -12.18696 -12.03638 -11.95142 -11.82870 -11.75100 -11.72274 -11.64742 -11.53956 -11.32118 -11.26122 -11.01299 -10.96323 -10.77996 -10.42653 -8.89208 -8.04212 -6.23754 1.33161 1.35224 1.43516 2.38260 3.15585 3.48019 3.86621 3.92053 4.02095 4.11869 4.19230 4.36029 4.57833 4.63336 4.68750 4.70817 4.73762 4.80078 4.84999 4.89463 4.92875 4.97014 5.07566 5.09904 5.13482 5.19637 5.22297 5.26397 5.30432 5.36410 5.40581 5.45377 5.50710 5.53561 5.59028 5.61299 5.68358 5.76058 5.81441 6.02237 6.24006 6.43872 6.64334 7.00689 7.45520 8.92550 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.019684 B = 0.007968 C = 0.007459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1422.103906 B = 3513.124410 C = 3752.873232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.101 4.101 3 C 0.218 3.782 4 H 0.001 0.999 5 C -0.542 4.542 6 H 0.049 0.951 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.941 3.059 10 H -0.279 1.279 11 H -0.283 1.283 12 H -0.272 1.272 13 N -0.502 5.502 14 C 0.036 3.964 15 C -0.124 4.124 16 C -0.108 4.108 17 C 0.073 3.927 18 H 0.026 0.974 19 C -0.073 4.073 20 C -0.096 4.096 21 C -0.124 4.124 22 C -0.112 4.112 23 C -0.117 4.117 24 H 0.044 0.956 25 H 0.030 0.970 26 H 0.058 0.942 27 H 0.032 0.968 28 H 0.047 0.953 29 H 0.260 0.740 30 H 0.065 0.935 31 H 0.027 0.973 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.026 0.974 37 H 0.075 0.925 38 H 0.039 0.961 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 8.726 -9.654 14.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.019 0.981 5 C -0.581 4.581 6 H 0.067 0.933 7 C -0.181 4.181 8 N -0.553 5.553 9 Si 0.768 3.232 10 H -0.205 1.205 11 H -0.209 1.209 12 H -0.196 1.196 13 N -0.225 5.225 14 C -0.092 4.092 15 C -0.162 4.162 16 C -0.146 4.146 17 C -0.035 4.035 18 H 0.044 0.956 19 C -0.092 4.092 20 C -0.134 4.134 21 C -0.161 4.161 22 C -0.149 4.149 23 C -0.155 4.155 24 H 0.063 0.937 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.083 0.917 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.105 0.895 36 H 0.045 0.955 37 H 0.093 0.907 38 H 0.058 0.942 39 H 0.076 0.924 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.071 0.929 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.311 8.612 -9.471 14.272 hybrid contribution 2.315 -0.597 1.028 2.603 sum -3.995 8.015 -8.443 12.308 Atomic orbital electron populations 1.21537 0.96107 0.99542 1.00799 1.21381 0.94655 0.98453 0.99519 1.19051 0.91322 0.90986 0.87652 0.98065 1.21941 0.94123 1.41093 1.00942 0.93294 1.25607 1.01582 0.95191 0.95677 1.70042 1.36279 1.42893 1.06067 0.85818 0.81914 0.77563 0.77934 1.20520 1.20901 1.19641 1.64975 1.53771 1.01561 1.02221 1.22723 0.97757 0.97157 0.91572 1.22368 1.00875 0.94774 0.98194 1.22539 1.02296 0.96624 0.93130 1.22670 0.95732 0.89526 0.95602 0.95596 1.21511 0.96066 0.94398 0.97237 1.22179 0.93610 0.96290 1.01272 1.22537 0.97981 0.94569 1.01028 1.22301 0.93390 0.98479 1.00769 1.22172 0.99075 0.93831 1.00463 0.93679 0.95066 0.92274 0.94920 0.93436 0.93115 0.91691 0.95410 0.92434 0.89708 0.90923 0.89519 0.95488 0.90656 0.94175 0.92373 0.90294 0.90850 0.90594 0.92936 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.98 9.73 71.98 0.70 -4.28 16 2 C -0.10 -4.91 5.14 30.59 0.16 -4.75 16 3 C 0.22 10.97 1.67 44.17 0.07 11.04 16 4 H 0.00 0.08 7.63 -2.39 -0.02 0.06 16 5 C -0.54 -29.59 6.26 25.60 0.16 -29.43 16 6 H 0.05 2.69 6.06 -2.91 -0.02 2.68 16 7 C 0.02 1.06 5.31 84.65 0.45 1.51 16 8 N -0.91 -53.44 11.72 21.45 0.25 -53.19 16 9 Si 0.94 44.41 29.54 68.60 2.03 46.43 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 N -0.50 -20.82 4.01 -837.59 -3.36 -24.18 16 14 C 0.04 1.39 4.99 86.45 0.43 1.82 16 15 C -0.12 -3.73 6.93 31.48 0.22 -3.51 16 16 C -0.11 -3.17 5.44 31.80 0.17 -3.00 16 17 C 0.07 2.79 1.83 45.26 0.08 2.87 16 18 H 0.03 1.18 6.23 -2.39 -0.01 1.17 16 19 C -0.07 -2.54 2.91 -10.07 -0.03 -2.57 16 20 C -0.10 -2.89 5.65 31.67 0.18 -2.71 16 21 C -0.12 -2.89 6.91 31.89 0.22 -2.67 16 22 C -0.11 -2.42 6.83 31.67 0.22 -2.20 16 23 C -0.12 -3.26 6.04 31.32 0.19 -3.07 16 24 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.06 2.24 7.86 -2.39 -0.02 2.23 16 27 H 0.03 1.54 6.97 -2.39 -0.02 1.52 16 28 H 0.05 2.60 6.44 -2.39 -0.02 2.59 16 29 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.06 2.34 8.12 -2.39 -0.02 2.32 16 31 H 0.03 1.23 5.98 -2.38 -0.01 1.21 16 32 H 0.06 1.70 8.14 -2.39 -0.02 1.69 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.07 1.91 7.48 -2.39 -0.02 1.89 16 35 H 0.09 2.28 5.96 -2.39 -0.01 2.27 16 36 H 0.03 1.14 7.71 -2.39 -0.02 1.12 16 37 H 0.07 2.20 5.85 -2.39 -0.01 2.19 16 38 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 42 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.07 1.78 6.61 -2.39 -0.02 1.77 16 Total: -1.00 -59.64 320.82 3.08 -56.56 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: 0.94 Total: 15.33 kcal Atomic # 6 Polarization: -44.18 SS G_CDS: 3.22 Total: -40.96 kcal Atomic # 7 Polarization: -74.26 SS G_CDS: -3.11 Total: -77.37 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -59.64 3.08 -56.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251322883.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.040 kcal (2) G-P(sol) polarization free energy of solvation -59.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds