Wall clock time and date at job start Mon Mar 30 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47559 * 2 1 4 4 C 1.53001 * 109.46885 * 239.99970 * 2 1 3 5 5 N 1.46903 * 109.47069 * 205.56168 * 4 2 1 6 6 C 1.46850 * 110.99959 * 66.14344 * 5 4 2 7 7 C 1.53030 * 109.52321 * 174.16036 * 6 5 4 8 8 C 1.53115 * 109.28144 * 59.18252 * 7 6 5 9 9 C 1.53124 * 109.15584 * 302.34281 * 8 7 6 10 10 H 1.09004 * 109.50643 * 297.71344 * 9 8 7 11 11 C 1.50704 * 109.50235 * 177.59530 * 9 8 7 12 12 H 1.08002 * 119.99770 * 246.41323 * 11 9 8 13 13 C 1.37878 * 120.00107 * 66.41525 * 11 9 8 14 14 N 1.31517 * 119.99867 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 120.00089 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47266 * 59.99835 * 15 13 11 17 17 H 1.48497 * 109.46954 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46907 * 299.99649 * 15 13 11 19 19 C 1.46844 * 111.00145 * 301.93475 * 5 4 2 20 20 H 1.09002 * 109.46500 * 65.82320 * 19 5 4 21 21 C 1.52999 * 109.46010 * 305.84248 * 19 5 4 22 22 C 1.53008 * 117.49721 * 239.63024 * 21 19 5 23 23 C 1.53000 * 117.49705 * 170.97373 * 21 19 5 24 24 H 1.09007 * 109.47128 * 59.99458 * 1 2 3 25 25 H 1.09003 * 109.47183 * 299.99821 * 1 2 3 26 26 H 1.08998 * 109.47536 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46964 * 120.00464 * 2 1 3 28 28 H 1.09002 * 109.47609 * 293.31215 * 3 2 1 29 29 H 1.09005 * 109.47130 * 53.30896 * 3 2 1 30 30 H 1.09004 * 109.47652 * 173.31187 * 3 2 1 31 31 H 1.09004 * 109.47480 * 325.56358 * 4 2 1 32 32 H 1.09002 * 109.47018 * 85.56683 * 4 2 1 33 33 H 1.08996 * 109.46096 * 294.17859 * 6 5 4 34 34 H 1.09004 * 109.45978 * 54.14538 * 6 5 4 35 35 H 1.09007 * 109.50495 * 299.23836 * 7 6 5 36 36 H 1.09000 * 109.50268 * 179.12152 * 7 6 5 37 37 H 1.08997 * 109.52703 * 182.44283 * 8 7 6 38 38 H 1.08989 * 109.52431 * 62.24355 * 8 7 6 39 39 H 0.96997 * 119.99995 * 180.02562 * 14 13 11 40 40 H 1.09002 * 115.55194 * 25.30496 * 21 19 5 41 41 H 1.08994 * 117.49708 * 0.02562 * 22 21 19 42 42 H 1.08999 * 117.49598 * 145.02363 * 22 21 19 43 43 H 1.09000 * 117.49788 * 214.97810 * 23 21 19 44 44 H 1.09000 * 117.50351 * 359.97337 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.3811 -1.2614 -0.9896 6 6 3.3345 -2.3195 0.0276 7 6 4.7189 -2.9566 0.1668 8 6 5.7323 -1.8812 0.5682 9 6 5.7263 -0.7677 -0.4829 10 1 6.0373 -1.1741 -1.4454 11 6 6.6782 0.3234 -0.0653 12 1 6.2988 1.3005 0.1953 13 6 8.0334 0.0745 -0.0160 14 7 8.4953 -1.1155 -0.3329 15 14 9.2133 1.4268 0.5022 16 1 8.8803 1.8735 1.8787 17 1 10.6043 0.9078 0.4737 18 1 9.0931 2.5739 -0.4332 19 6 4.3126 -0.1941 -0.6032 20 1 4.0077 0.2245 0.3560 21 6 4.2977 0.9054 -1.6671 22 6 5.6174 1.2232 -2.3731 23 6 5.0403 2.2050 -1.3503 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 0.8899 28 1 1.7778 1.9206 -0.9438 29 1 1.5823 1.9897 0.8241 30 1 3.1235 1.4447 0.1197 31 1 1.3619 -1.5371 -1.5001 32 1 2.0861 -0.0184 -2.0812 33 1 3.0341 -1.8910 0.9838 34 1 2.6132 -3.0799 -0.2721 35 1 5.0141 -3.3974 -0.7855 36 1 4.6877 -3.7312 0.9329 37 1 6.7275 -2.3220 0.6262 38 1 5.4590 -1.4674 1.5387 39 1 9.4487 -1.2907 -0.2979 40 1 3.3823 0.9791 -2.2542 41 1 6.4960 0.6487 -2.0800 42 1 5.5701 1.5063 -3.4246 43 1 4.6137 3.1337 -1.7294 44 1 5.5392 2.2770 -0.3838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259799317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:26 Heat of formation + Delta-G solvation = 37.036825 kcal Electronic energy + Delta-G solvation = -20689.476476 eV Core-core repulsion = 18028.894120 eV Total energy + Delta-G solvation = -2660.582356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.70353 -36.19955 -35.06345 -32.81930 -31.01950 -29.39350 -27.17054 -25.72026 -25.25569 -22.51857 -21.84112 -21.36571 -20.04442 -19.50318 -17.69634 -16.65844 -15.37489 -15.11711 -14.52839 -14.29141 -13.83945 -13.58291 -13.49411 -13.08019 -12.48852 -12.40696 -12.21531 -12.02923 -11.65154 -11.35892 -11.20666 -11.02875 -10.96095 -10.83024 -10.63982 -10.49876 -10.30677 -10.11064 -9.97240 -9.66575 -9.30655 -9.23280 -9.11033 -8.66282 -8.40571 -8.28153 -7.39307 -5.97134 -3.96876 3.33074 3.38151 3.40907 4.40939 4.58614 4.94313 5.09606 5.16250 5.30234 5.33874 5.65316 5.69161 5.75550 5.80997 5.89816 5.97764 6.00749 6.07524 6.08512 6.11752 6.15718 6.22481 6.29243 6.33437 6.44162 6.51103 6.52120 6.64045 6.68328 6.75883 6.81225 6.91280 7.01915 7.16450 7.27711 7.42632 7.68859 7.78150 7.87331 7.92555 8.09825 8.18500 8.51837 9.03292 9.61580 11.10363 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.008415 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.530301 B = 3326.578824 C = 3941.621007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.134 4.134 3 C -0.164 4.164 4 C 0.056 3.944 5 N -0.530 5.530 6 C 0.062 3.938 7 C -0.118 4.118 8 C -0.109 4.109 9 C 0.059 3.941 10 H 0.042 0.958 11 C -0.514 4.514 12 H 0.071 0.929 13 C 0.063 3.937 14 N -0.887 5.887 15 Si 0.880 3.120 16 H -0.279 1.279 17 H -0.289 1.289 18 H -0.275 1.275 19 C 0.119 3.881 20 H 0.040 0.960 21 C -0.139 4.139 22 C -0.175 4.175 23 C -0.192 4.192 24 H 0.051 0.949 25 H 0.047 0.953 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.049 0.951 29 H 0.040 0.960 30 H 0.089 0.911 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.025 0.975 34 H 0.056 0.944 35 H 0.061 0.939 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.029 0.971 39 H 0.259 0.741 40 H 0.086 0.914 41 H 0.145 0.855 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.176 1.257 -0.213 11.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.220 4.220 4 C -0.072 4.072 5 N -0.253 5.253 6 C -0.066 4.066 7 C -0.156 4.156 8 C -0.147 4.147 9 C 0.040 3.960 10 H 0.060 0.940 11 C -0.552 4.552 12 H 0.088 0.912 13 C -0.138 4.138 14 N -0.526 5.526 15 Si 0.708 3.292 16 H -0.205 1.205 17 H -0.215 1.215 18 H -0.201 1.201 19 C 0.012 3.988 20 H 0.058 0.942 21 C -0.157 4.157 22 C -0.211 4.211 23 C -0.229 4.229 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.068 0.932 27 H 0.087 0.913 28 H 0.068 0.932 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.104 0.896 41 H 0.163 0.837 42 H 0.079 0.921 43 H 0.083 0.917 44 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -10.817 0.926 -0.677 10.878 hybrid contribution 0.244 1.121 1.052 1.556 sum -10.573 2.047 0.374 10.775 Atomic orbital electron populations 1.21798 0.95845 1.01003 1.01181 1.21805 0.95370 0.97694 1.00568 1.22415 1.04057 0.94997 1.00577 1.22359 0.90365 0.98059 0.96440 1.62151 1.06726 1.12243 1.44140 1.22023 0.98022 0.93680 0.92876 1.21679 0.94907 0.98453 1.00595 1.21648 0.98603 0.96141 0.98352 1.18815 0.88287 0.93057 0.95818 0.94005 1.21469 0.91153 0.97793 1.44791 0.91181 1.24899 0.98212 0.95139 0.95564 1.69927 1.13627 1.20521 1.48492 0.86834 0.80412 0.82704 0.79208 1.20499 1.21481 1.20060 1.21513 0.94564 0.88779 0.93971 0.94232 1.22154 0.95472 0.96327 1.01757 1.23591 1.00158 1.03075 0.94321 1.23329 1.05008 0.91709 1.02848 0.92979 0.93340 0.93185 0.91271 0.93174 0.94120 0.89228 0.91984 0.90690 0.95714 0.92543 0.92065 0.93711 0.90157 0.95200 0.93073 0.89581 0.83729 0.92136 0.91659 0.86937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.06 37.16 0.34 -1.30 16 2 C -0.13 -1.90 2.37 -90.62 -0.22 -2.12 16 3 C -0.16 -2.39 7.58 37.15 0.28 -2.11 16 4 C 0.06 0.86 4.90 -3.82 -0.02 0.84 16 5 N -0.53 -9.67 4.69 -226.69 -1.06 -10.74 16 6 C 0.06 1.08 5.12 -3.84 -0.02 1.07 16 7 C -0.12 -2.29 6.09 -26.66 -0.16 -2.45 16 8 C -0.11 -2.51 5.09 -26.61 -0.14 -2.64 16 9 C 0.06 1.39 1.15 -91.69 -0.11 1.28 16 10 H 0.04 1.13 7.39 -51.93 -0.38 0.74 16 11 C -0.51 -12.87 5.11 -34.44 -0.18 -13.05 16 12 H 0.07 1.73 4.22 -52.49 -0.22 1.51 16 13 C 0.06 1.66 5.26 -17.82 -0.09 1.57 16 14 N -0.89 -24.46 11.83 55.43 0.66 -23.81 16 15 Si 0.88 20.60 29.54 -169.99 -5.02 15.58 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 19 C 0.12 2.38 1.06 -67.72 -0.07 2.30 16 20 H 0.04 0.84 5.38 -51.93 -0.28 0.56 16 21 C -0.14 -2.63 3.67 -90.62 -0.33 -2.96 16 22 C -0.18 -3.59 9.21 -26.69 -0.25 -3.84 16 23 C -0.19 -3.63 8.95 -26.69 -0.24 -3.87 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.55 8.12 -51.93 -0.42 0.12 16 27 H 0.07 1.08 5.89 -51.93 -0.31 0.78 16 28 H 0.05 0.70 7.69 -51.93 -0.40 0.30 16 29 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.09 1.51 3.22 -51.93 -0.17 1.34 16 31 H 0.06 0.87 7.80 -51.93 -0.41 0.47 16 32 H 0.07 1.15 5.53 -51.93 -0.29 0.87 16 33 H 0.02 0.43 6.36 -51.93 -0.33 0.10 16 34 H 0.06 0.88 8.06 -51.93 -0.42 0.46 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 36 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 2.06 6.66 -51.93 -0.35 1.71 16 38 H 0.03 0.68 8.14 -51.94 -0.42 0.26 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.09 1.53 5.23 -51.93 -0.27 1.26 16 41 H 0.15 3.48 4.57 -51.93 -0.24 3.25 16 42 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 44 H 0.11 2.32 5.02 -51.93 -0.26 2.06 16 LS Contribution 306.58 15.07 4.62 4.62 Total: -1.00 -25.59 306.58 -9.26 -34.85 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -7.25 Total: 6.78 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: -1.20 Total: -27.29 kcal Atomic # 7 Polarization: -34.14 SS G_CDS: -0.41 Total: -34.55 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -25.59 -9.26 -34.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.885 kcal (2) G-P(sol) polarization free energy of solvation -25.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds