Wall clock time and date at job start Mon Mar 30 2020 06:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52991 * 109.47559 * 2 1 4 4 C 1.53001 * 109.46885 * 239.99970 * 2 1 3 5 5 N 1.46903 * 109.47069 * 205.56168 * 4 2 1 6 6 C 1.46850 * 110.99959 * 66.14344 * 5 4 2 7 7 C 1.53030 * 109.52321 * 174.16036 * 6 5 4 8 8 C 1.53115 * 109.28144 * 59.18252 * 7 6 5 9 9 C 1.53124 * 109.15584 * 302.34281 * 8 7 6 10 10 H 1.09004 * 109.50643 * 297.71344 * 9 8 7 11 11 C 1.50704 * 109.50235 * 177.59530 * 9 8 7 12 12 H 1.08002 * 119.99770 * 246.41323 * 11 9 8 13 13 C 1.37878 * 120.00107 * 66.41525 * 11 9 8 14 14 N 1.31517 * 119.99867 * 359.97438 * 13 11 9 15 15 Si 1.86801 * 120.00089 * 180.02562 * 13 11 9 16 16 H 1.48498 * 109.47266 * 59.99835 * 15 13 11 17 17 H 1.48497 * 109.46954 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46907 * 299.99649 * 15 13 11 19 19 C 1.46844 * 111.00145 * 301.93475 * 5 4 2 20 20 H 1.09002 * 109.46500 * 65.82320 * 19 5 4 21 21 C 1.52999 * 109.46010 * 305.84248 * 19 5 4 22 22 C 1.53008 * 117.49721 * 239.63024 * 21 19 5 23 23 C 1.53000 * 117.49705 * 170.97373 * 21 19 5 24 24 H 1.09007 * 109.47128 * 59.99458 * 1 2 3 25 25 H 1.09003 * 109.47183 * 299.99821 * 1 2 3 26 26 H 1.08998 * 109.47536 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.46964 * 120.00464 * 2 1 3 28 28 H 1.09002 * 109.47609 * 293.31215 * 3 2 1 29 29 H 1.09005 * 109.47130 * 53.30896 * 3 2 1 30 30 H 1.09004 * 109.47652 * 173.31187 * 3 2 1 31 31 H 1.09004 * 109.47480 * 325.56358 * 4 2 1 32 32 H 1.09002 * 109.47018 * 85.56683 * 4 2 1 33 33 H 1.08996 * 109.46096 * 294.17859 * 6 5 4 34 34 H 1.09004 * 109.45978 * 54.14538 * 6 5 4 35 35 H 1.09007 * 109.50495 * 299.23836 * 7 6 5 36 36 H 1.09000 * 109.50268 * 179.12152 * 7 6 5 37 37 H 1.08997 * 109.52703 * 182.44283 * 8 7 6 38 38 H 1.08989 * 109.52431 * 62.24355 * 8 7 6 39 39 H 0.96997 * 119.99995 * 180.02562 * 14 13 11 40 40 H 1.09002 * 115.55194 * 25.30496 * 21 19 5 41 41 H 1.08994 * 117.49708 * 0.02562 * 22 21 19 42 42 H 1.08999 * 117.49598 * 145.02363 * 22 21 19 43 43 H 1.09000 * 117.49788 * 214.97810 * 23 21 19 44 44 H 1.09000 * 117.50351 * 359.97337 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 7 3.3811 -1.2614 -0.9896 6 6 3.3345 -2.3195 0.0276 7 6 4.7189 -2.9566 0.1668 8 6 5.7323 -1.8812 0.5682 9 6 5.7263 -0.7677 -0.4829 10 1 6.0373 -1.1741 -1.4454 11 6 6.6782 0.3234 -0.0653 12 1 6.2988 1.3005 0.1953 13 6 8.0334 0.0745 -0.0160 14 7 8.4953 -1.1155 -0.3329 15 14 9.2133 1.4268 0.5022 16 1 8.8803 1.8735 1.8787 17 1 10.6043 0.9078 0.4737 18 1 9.0931 2.5739 -0.4332 19 6 4.3126 -0.1941 -0.6032 20 1 4.0077 0.2245 0.3560 21 6 4.2977 0.9054 -1.6671 22 6 5.6174 1.2232 -2.3731 23 6 5.0403 2.2050 -1.3503 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5139 0.8899 28 1 1.7778 1.9206 -0.9438 29 1 1.5823 1.9897 0.8241 30 1 3.1235 1.4447 0.1197 31 1 1.3619 -1.5371 -1.5001 32 1 2.0861 -0.0184 -2.0812 33 1 3.0341 -1.8910 0.9838 34 1 2.6132 -3.0799 -0.2721 35 1 5.0141 -3.3974 -0.7855 36 1 4.6877 -3.7312 0.9329 37 1 6.7275 -2.3220 0.6262 38 1 5.4590 -1.4674 1.5387 39 1 9.4487 -1.2907 -0.2979 40 1 3.3823 0.9791 -2.2542 41 1 6.4960 0.6487 -2.0800 42 1 5.5701 1.5063 -3.4246 43 1 4.6137 3.1337 -1.7294 44 1 5.5392 2.2770 -0.3838 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259799317.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:09:26 Heat of formation + Delta-G solvation = 23.819308 kcal Electronic energy + Delta-G solvation = -20690.049630 eV Core-core repulsion = 18028.894120 eV Total energy + Delta-G solvation = -2661.155510 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.21196 -37.65694 -36.56718 -34.57531 -32.59906 -31.07511 -28.39097 -27.12659 -26.91968 -24.12245 -23.41640 -22.92773 -21.35913 -21.14171 -19.27080 -18.46185 -16.86726 -16.75983 -16.06857 -15.96397 -15.26205 -15.00084 -14.94269 -14.40245 -14.17322 -13.92690 -13.78608 -13.26881 -13.00360 -12.93293 -12.76546 -12.66113 -12.44559 -12.33266 -12.18175 -11.89112 -11.77711 -11.63053 -11.37192 -11.34406 -11.12761 -10.86424 -10.68735 -10.39807 -10.29397 -10.17181 -8.82282 -7.99887 -6.02727 1.43453 1.44804 1.50014 2.48217 3.09148 3.30461 3.43616 3.95996 4.06402 4.13016 4.23227 4.33079 4.39673 4.43406 4.48343 4.57534 4.69617 4.70899 4.83386 4.86431 4.86861 4.93139 4.95790 5.02035 5.06212 5.11577 5.14540 5.19995 5.22034 5.33538 5.38288 5.46594 5.52299 5.56474 5.59815 5.62104 5.89424 5.95829 6.07412 6.19311 6.34394 6.52792 6.63639 7.04801 7.57643 9.07397 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024805 B = 0.008415 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.530301 B = 3326.578824 C = 3941.621007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.130 4.130 3 C -0.162 4.162 4 C 0.057 3.943 5 N -0.544 5.544 6 C 0.066 3.934 7 C -0.113 4.113 8 C -0.106 4.106 9 C 0.062 3.938 10 H 0.000 1.000 11 C -0.508 4.508 12 H 0.076 0.924 13 C 0.015 3.985 14 N -0.921 5.921 15 Si 0.933 3.067 16 H -0.275 1.275 17 H -0.294 1.294 18 H -0.269 1.269 19 C 0.131 3.869 20 H 0.034 0.966 21 C -0.126 4.126 22 C -0.194 4.194 23 C -0.178 4.178 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.065 0.935 37 H 0.044 0.956 38 H 0.023 0.977 39 H 0.254 0.746 40 H 0.108 0.892 41 H 0.104 0.896 42 H 0.078 0.922 43 H 0.095 0.905 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.883 2.249 -0.297 14.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.150 4.150 3 C -0.219 4.219 4 C -0.070 4.070 5 N -0.267 5.267 6 C -0.061 4.061 7 C -0.150 4.150 8 C -0.144 4.144 9 C 0.043 3.957 10 H 0.019 0.981 11 C -0.546 4.546 12 H 0.093 0.907 13 C -0.183 4.183 14 N -0.561 5.561 15 Si 0.760 3.240 16 H -0.201 1.201 17 H -0.220 1.220 18 H -0.194 1.194 19 C 0.023 3.977 20 H 0.052 0.948 21 C -0.144 4.144 22 C -0.230 4.230 23 C -0.215 4.215 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.084 0.916 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.064 0.936 40 H 0.125 0.875 41 H 0.122 0.878 42 H 0.097 0.903 43 H 0.113 0.887 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.541 1.931 -0.757 13.699 hybrid contribution 1.069 0.797 1.063 1.705 sum -12.472 2.728 0.306 12.770 Atomic orbital electron populations 1.21738 0.93552 1.01924 1.02011 1.21731 0.97223 0.96924 0.99128 1.22356 1.02401 0.95641 1.01479 1.22437 0.88771 0.98848 0.96981 1.62091 1.08333 1.11976 1.44324 1.22002 0.96957 0.94043 0.93137 1.21594 0.95227 0.97814 1.00401 1.21504 0.97947 0.97074 0.97914 1.18683 0.90513 0.92843 0.93626 0.98147 1.21807 0.91487 0.98372 1.42967 0.90655 1.25540 0.99857 0.96686 0.96207 1.70071 1.13367 1.22240 1.50460 0.85993 0.78419 0.80643 0.78976 1.20060 1.21970 1.19437 1.21215 0.92792 0.89392 0.94265 0.94831 1.22167 0.95364 0.95883 1.01030 1.23402 0.99610 1.04247 0.95777 1.23252 1.04207 0.92816 1.01239 0.91965 0.92735 0.92264 0.92794 0.92235 0.93209 0.91710 0.90134 0.90500 0.95361 0.89753 0.93402 0.91637 0.93692 0.95858 0.93643 0.87464 0.87753 0.90331 0.88669 0.88888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.06 71.98 0.65 -1.95 16 2 C -0.13 -3.28 2.37 -10.80 -0.03 -3.30 16 3 C -0.16 -4.27 7.58 71.98 0.55 -3.73 16 4 C 0.06 1.56 4.90 86.30 0.42 1.99 16 5 N -0.54 -18.97 4.69 -871.10 -4.09 -23.06 16 6 C 0.07 2.19 5.12 86.32 0.44 2.64 16 7 C -0.11 -4.33 6.09 30.64 0.19 -4.15 16 8 C -0.11 -5.02 5.09 30.67 0.16 -4.87 16 9 C 0.06 3.02 1.15 -11.48 -0.01 3.00 16 10 H 0.00 0.02 7.39 -2.38 -0.02 0.00 16 11 C -0.51 -26.20 5.11 25.60 0.13 -26.06 16 12 H 0.08 3.77 4.22 -2.91 -0.01 3.75 16 13 C 0.01 0.81 5.26 84.65 0.45 1.25 16 14 N -0.92 -53.27 11.83 21.45 0.25 -53.02 16 15 Si 0.93 43.29 29.54 68.60 2.03 45.32 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 19 C 0.13 5.18 1.06 44.94 0.05 5.23 16 20 H 0.03 1.40 5.38 -2.39 -0.01 1.39 16 21 C -0.13 -4.61 3.67 -10.79 -0.04 -4.65 16 22 C -0.19 -7.89 9.21 30.62 0.28 -7.61 16 23 C -0.18 -6.48 8.95 30.62 0.27 -6.21 16 24 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 25 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.06 1.05 8.12 -2.39 -0.02 1.03 16 27 H 0.05 1.54 5.89 -2.39 -0.01 1.53 16 28 H 0.06 1.44 7.69 -2.39 -0.02 1.42 16 29 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.06 2.05 3.22 -2.39 -0.01 2.04 16 31 H 0.08 1.93 7.80 -2.39 -0.02 1.91 16 32 H 0.08 2.08 5.53 -2.39 -0.01 2.07 16 33 H 0.03 0.93 6.36 -2.39 -0.02 0.92 16 34 H 0.08 2.36 8.06 -2.38 -0.02 2.34 16 35 H 0.05 1.95 8.14 -2.38 -0.02 1.93 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.04 2.42 6.66 -2.39 -0.02 2.40 16 38 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 40 H 0.11 3.49 5.23 -2.39 -0.01 3.48 16 41 H 0.10 5.21 4.57 -2.39 -0.01 5.20 16 42 H 0.08 2.87 8.14 -2.39 -0.02 2.85 16 43 H 0.10 2.90 8.14 -2.39 -0.02 2.88 16 44 H 0.09 3.78 5.02 -2.39 -0.01 3.76 16 Total: -1.00 -57.16 306.58 2.67 -54.48 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.98 Total: 24.69 kcal Atomic # 6 Polarization: -51.93 SS G_CDS: 3.51 Total: -48.42 kcal Atomic # 7 Polarization: -72.24 SS G_CDS: -3.83 Total: -76.08 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -57.16 2.67 -54.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259799317.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.304 kcal (2) G-P(sol) polarization free energy of solvation -57.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds