Wall clock time and date at job start Mon Mar 30 2020 06:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47508 * 2 1 4 4 C 1.52997 * 109.46995 * 120.00395 * 2 1 3 5 5 H 1.09003 * 108.78338 * 180.82621 * 4 2 1 6 6 C 1.50448 * 108.72475 * 62.47329 * 4 2 1 7 7 H 1.08994 * 109.63344 * 265.16783 * 6 4 2 8 8 C 1.50699 * 109.63074 * 25.56658 * 6 4 2 9 9 H 1.08001 * 120.00400 * 6.07415 * 8 6 4 10 10 C 1.37879 * 119.99673 * 186.07223 * 8 6 4 11 11 N 1.31517 * 120.00092 * 359.97438 * 10 8 6 12 12 Si 1.86804 * 119.99999 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47016 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47127 * 120.00042 * 12 10 8 15 15 H 1.48505 * 109.47042 * 240.00152 * 12 10 8 16 16 C 1.54311 * 108.49452 * 145.46839 * 6 4 2 17 17 C 1.45877 * 112.18594 * 78.53675 * 16 6 4 18 18 C 1.54307 * 112.18415 * 298.87843 * 17 16 6 19 19 C 1.50442 * 108.49951 * 78.54083 * 18 17 16 20 20 N 1.47997 * 108.81111 * 299.22651 * 4 2 1 21 21 C 1.46902 * 111.00152 * 289.40777 * 20 4 2 22 22 C 1.53000 * 117.50028 * 193.65495 * 21 20 4 23 23 C 1.53003 * 60.00146 * 252.51215 * 22 21 20 24 24 H 1.08998 * 109.47328 * 306.87375 * 1 2 3 25 25 H 1.09007 * 109.47186 * 66.86893 * 1 2 3 26 26 H 1.08994 * 109.47631 * 186.86399 * 1 2 3 27 27 H 1.09004 * 109.46656 * 240.00025 * 2 1 3 28 28 H 1.08994 * 109.47195 * 164.39652 * 3 2 1 29 29 H 1.09006 * 109.47340 * 284.40100 * 3 2 1 30 30 H 1.09000 * 109.46894 * 44.39641 * 3 2 1 31 31 H 0.97007 * 120.00001 * 179.97438 * 11 10 8 32 32 H 1.09007 * 108.93633 * 199.23709 * 16 6 4 33 33 H 1.08999 * 108.93823 * 317.92993 * 16 6 4 34 34 H 1.09005 * 108.93652 * 59.57941 * 17 16 6 35 35 H 1.08999 * 108.93969 * 178.26933 * 17 16 6 36 36 H 1.09007 * 109.62947 * 198.23612 * 18 17 16 37 37 H 1.08997 * 109.63044 * 318.63162 * 18 17 16 38 38 H 1.08998 * 108.81802 * 145.40984 * 19 18 17 39 39 H 1.08993 * 108.81457 * 27.12783 * 19 18 17 40 40 H 1.08999 * 115.55760 * 339.35174 * 21 20 4 41 41 H 1.09001 * 117.49651 * 145.02137 * 22 21 20 42 42 H 1.08999 * 117.49978 * 0.02562 * 22 21 20 43 43 H 1.08996 * 117.49567 * 107.48832 * 23 22 21 44 44 H 1.08992 * 117.49912 * 252.48864 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1298 -0.7019 1.2453 6 6 1.5801 -2.1530 1.2017 7 1 0.6523 -2.2585 1.7639 8 6 1.3542 -2.5650 -0.2301 9 1 1.6194 -1.8938 -1.0335 10 6 0.8089 -3.7991 -0.5145 11 7 0.4864 -4.6167 0.4638 12 14 0.5282 -4.3096 -2.2894 13 1 0.9711 -3.2186 -3.1942 14 1 1.3064 -5.5405 -2.5794 15 1 -0.9169 -4.5752 -2.5054 16 6 2.6732 -3.0395 1.8345 17 6 2.6436 -2.9944 3.2922 18 6 2.8910 -1.5718 3.8363 19 6 1.6175 -0.7819 3.7037 20 7 1.5541 -0.0016 2.4476 21 6 2.2341 1.2920 2.5966 22 6 2.0909 2.0152 3.9372 23 6 1.3586 2.5424 2.7015 24 1 -0.3634 0.6166 0.8221 25 1 -0.3634 0.4037 -0.9451 26 1 -0.3634 -1.0202 0.1228 27 1 1.8933 -0.5139 -0.8900 28 1 3.0943 1.4550 0.2764 29 1 1.9203 1.8703 -0.9954 30 1 1.4689 2.0298 0.7190 31 1 0.1024 -5.4848 0.2637 32 1 2.5257 -4.0694 1.5092 33 1 3.6493 -2.6969 1.4910 34 1 1.6693 -3.3407 3.6372 35 1 3.4137 -3.6599 3.6825 36 1 3.1805 -1.6262 4.8858 37 1 3.6841 -1.0929 3.2620 38 1 1.5395 -0.0963 4.5475 39 1 0.7726 -1.4697 3.7332 40 1 3.1855 1.3862 2.0729 41 1 2.9481 2.5853 4.2956 42 1 1.4924 1.5310 4.7089 43 1 0.2781 2.4051 2.6602 44 1 1.7338 3.4594 2.2473 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259802743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:59 Heat of formation + Delta-G solvation = 39.143405 kcal Electronic energy + Delta-G solvation = -20813.781839 eV Core-core repulsion = 18153.290831 eV Total energy + Delta-G solvation = -2660.491008 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.60453 -36.39322 -34.90169 -32.84984 -31.22409 -29.71551 -27.19413 -25.63880 -24.31418 -23.46747 -22.27164 -21.02904 -19.80540 -19.20780 -18.08280 -16.09069 -15.91285 -15.38205 -14.36124 -14.25558 -14.02340 -13.35729 -13.02734 -12.88353 -12.72301 -12.32352 -12.17435 -11.80455 -11.48677 -11.34316 -11.16749 -10.97765 -10.83127 -10.74413 -10.45922 -10.33917 -10.26162 -10.06549 -9.76568 -9.71642 -9.63911 -9.31662 -9.08213 -8.88638 -8.31122 -8.25230 -7.36832 -5.94542 -3.95457 3.32501 3.41436 3.44351 4.09633 4.36329 4.53254 5.22536 5.24953 5.36538 5.43929 5.51909 5.66049 5.80068 5.83419 5.87845 5.90265 5.97465 6.03844 6.22256 6.28603 6.30984 6.34936 6.44669 6.47058 6.57755 6.63061 6.70735 6.73755 6.84066 6.86093 6.96260 7.06267 7.19682 7.24426 7.40705 7.43809 7.63948 7.76566 7.84576 7.93457 8.11015 8.23136 8.55598 9.07626 9.66743 11.13869 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.008899 C = 0.007062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.335227 B = 3145.517095 C = 3963.664630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 C -0.165 4.165 4 C 0.116 3.884 5 H 0.019 0.981 6 C 0.058 3.942 7 H 0.043 0.957 8 C -0.505 4.505 9 H 0.071 0.929 10 C 0.061 3.939 11 N -0.888 5.888 12 Si 0.882 3.118 13 H -0.273 1.273 14 H -0.287 1.287 15 H -0.286 1.286 16 C -0.115 4.115 17 C -0.105 4.105 18 C -0.143 4.143 19 C 0.061 3.939 20 N -0.512 5.512 21 C 0.033 3.967 22 C -0.201 4.201 23 C -0.171 4.171 24 H 0.043 0.957 25 H 0.023 0.977 26 H 0.080 0.920 27 H 0.086 0.914 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.257 0.743 32 H 0.078 0.922 33 H 0.022 0.978 34 H 0.057 0.943 35 H 0.034 0.966 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.054 9.630 5.097 11.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.097 4.097 3 C -0.222 4.222 4 C 0.010 3.990 5 H 0.037 0.963 6 C 0.040 3.960 7 H 0.061 0.939 8 C -0.544 4.544 9 H 0.088 0.912 10 C -0.140 4.140 11 N -0.527 5.527 12 Si 0.710 3.290 13 H -0.198 1.198 14 H -0.214 1.214 15 H -0.212 1.212 16 C -0.153 4.153 17 C -0.143 4.143 18 C -0.182 4.182 19 C -0.066 4.066 20 N -0.236 5.236 21 C -0.077 4.077 22 C -0.238 4.238 23 C -0.210 4.210 24 H 0.062 0.938 25 H 0.042 0.958 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.091 0.909 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.041 0.959 34 H 0.075 0.925 35 H 0.053 0.947 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.507 9.509 5.037 11.049 hybrid contribution 0.786 -0.578 -0.802 1.263 sum 3.293 8.932 4.235 10.419 Atomic orbital electron populations 1.21676 0.95032 1.03396 0.98261 1.21256 0.96966 0.93024 0.98484 1.22505 0.99938 0.99188 1.00538 1.21516 0.94896 0.95762 0.86847 0.96280 1.18477 0.94530 0.86703 0.96332 0.93880 1.21560 1.40188 1.00683 0.91931 0.91171 1.24961 0.95874 0.96795 0.96382 1.69970 1.43250 1.08842 1.30679 0.86691 0.77742 0.78498 0.86019 1.19804 1.21353 1.21221 1.20613 0.98092 1.04145 0.92411 1.20572 1.00473 0.94363 0.98873 1.21911 0.98814 0.97910 0.99610 1.21935 0.97393 0.96187 0.91047 1.61606 1.56292 1.02536 1.03179 1.22578 0.96936 0.89906 0.98264 1.23342 1.03150 1.04851 0.92478 1.23080 0.99609 0.97360 1.00914 0.93799 0.95832 0.90149 0.89640 0.94394 0.94826 0.90882 0.93351 0.90331 0.95926 0.92480 0.94726 0.93082 0.92633 0.92081 0.90893 0.89198 0.89660 0.88506 0.88505 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.51 8.50 37.16 0.32 -2.20 16 2 C -0.08 -1.54 2.22 -90.62 -0.20 -1.74 16 3 C -0.16 -2.71 7.72 37.16 0.29 -2.42 16 4 C 0.12 2.34 1.06 -68.38 -0.07 2.27 16 5 H 0.02 0.41 6.32 -51.93 -0.33 0.08 16 6 C 0.06 1.36 0.84 -92.36 -0.08 1.28 16 7 H 0.04 1.14 6.99 -51.93 -0.36 0.77 16 8 C -0.51 -12.92 6.08 -34.44 -0.21 -13.13 16 9 H 0.07 1.78 4.78 -52.49 -0.25 1.53 16 10 C 0.06 1.62 5.19 -17.82 -0.09 1.53 16 11 N -0.89 -24.74 11.96 55.43 0.66 -24.08 16 12 Si 0.88 20.92 29.54 -169.99 -5.02 15.90 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 16 C -0.11 -2.61 4.58 -29.42 -0.13 -2.74 16 17 C -0.11 -2.06 5.30 -29.42 -0.16 -2.22 16 18 C -0.14 -2.43 5.58 -27.32 -0.15 -2.58 16 19 C 0.06 1.04 5.04 -4.49 -0.02 1.02 16 20 N -0.51 -9.07 3.91 -219.98 -0.86 -9.93 16 21 C 0.03 0.49 3.42 -67.71 -0.23 0.26 16 22 C -0.20 -2.57 9.53 -26.73 -0.25 -2.82 16 23 C -0.17 -2.27 8.14 -26.73 -0.22 -2.49 16 24 H 0.04 0.83 7.69 -51.93 -0.40 0.43 16 25 H 0.02 0.43 8.14 -51.92 -0.42 0.00 16 26 H 0.08 1.85 5.90 -51.93 -0.31 1.54 16 27 H 0.09 1.83 5.39 -51.93 -0.28 1.55 16 28 H 0.04 0.60 6.53 -51.93 -0.34 0.26 16 29 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.07 1.14 4.03 -51.93 -0.21 0.93 16 31 H 0.26 6.91 8.31 -40.82 -0.34 6.58 16 32 H 0.08 2.04 6.48 -51.93 -0.34 1.70 16 33 H 0.02 0.50 7.51 -51.93 -0.39 0.11 16 34 H 0.06 1.18 7.52 -51.93 -0.39 0.79 16 35 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.98 7.02 -51.93 -0.36 0.61 16 38 H 0.06 0.91 5.19 -51.93 -0.27 0.64 16 39 H 0.07 1.38 6.59 -51.93 -0.34 1.04 16 40 H 0.09 1.41 6.06 -51.93 -0.31 1.09 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.10 1.25 6.17 -51.93 -0.32 0.93 16 43 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 44 H 0.09 1.02 8.10 -51.93 -0.42 0.60 16 LS Contribution 305.36 15.07 4.60 4.60 Total: -1.00 -25.94 305.36 -9.13 -35.08 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -7.30 Total: 4.41 kcal Atomic # 6 Polarization: -24.76 SS G_CDS: -1.22 Total: -25.98 kcal Atomic # 7 Polarization: -33.82 SS G_CDS: -0.20 Total: -34.01 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -25.94 -9.13 -35.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.221 kcal (2) G-P(sol) polarization free energy of solvation -25.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds