Wall clock time and date at job start Mon Mar 30 2020 06:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47508 * 2 1 4 4 C 1.52997 * 109.46995 * 120.00395 * 2 1 3 5 5 H 1.09003 * 108.78338 * 180.82621 * 4 2 1 6 6 C 1.50448 * 108.72475 * 62.47329 * 4 2 1 7 7 H 1.08994 * 109.63344 * 265.16783 * 6 4 2 8 8 C 1.50699 * 109.63074 * 25.56658 * 6 4 2 9 9 H 1.08001 * 120.00400 * 6.07415 * 8 6 4 10 10 C 1.37879 * 119.99673 * 186.07223 * 8 6 4 11 11 N 1.31517 * 120.00092 * 359.97438 * 10 8 6 12 12 Si 1.86804 * 119.99999 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47016 * 359.97438 * 12 10 8 14 14 H 1.48495 * 109.47127 * 120.00042 * 12 10 8 15 15 H 1.48505 * 109.47042 * 240.00152 * 12 10 8 16 16 C 1.54311 * 108.49452 * 145.46839 * 6 4 2 17 17 C 1.45877 * 112.18594 * 78.53675 * 16 6 4 18 18 C 1.54307 * 112.18415 * 298.87843 * 17 16 6 19 19 C 1.50442 * 108.49951 * 78.54083 * 18 17 16 20 20 N 1.47997 * 108.81111 * 299.22651 * 4 2 1 21 21 C 1.46902 * 111.00152 * 289.40777 * 20 4 2 22 22 C 1.53000 * 117.50028 * 193.65495 * 21 20 4 23 23 C 1.53003 * 60.00146 * 252.51215 * 22 21 20 24 24 H 1.08998 * 109.47328 * 306.87375 * 1 2 3 25 25 H 1.09007 * 109.47186 * 66.86893 * 1 2 3 26 26 H 1.08994 * 109.47631 * 186.86399 * 1 2 3 27 27 H 1.09004 * 109.46656 * 240.00025 * 2 1 3 28 28 H 1.08994 * 109.47195 * 164.39652 * 3 2 1 29 29 H 1.09006 * 109.47340 * 284.40100 * 3 2 1 30 30 H 1.09000 * 109.46894 * 44.39641 * 3 2 1 31 31 H 0.97007 * 120.00001 * 179.97438 * 11 10 8 32 32 H 1.09007 * 108.93633 * 199.23709 * 16 6 4 33 33 H 1.08999 * 108.93823 * 317.92993 * 16 6 4 34 34 H 1.09005 * 108.93652 * 59.57941 * 17 16 6 35 35 H 1.08999 * 108.93969 * 178.26933 * 17 16 6 36 36 H 1.09007 * 109.62947 * 198.23612 * 18 17 16 37 37 H 1.08997 * 109.63044 * 318.63162 * 18 17 16 38 38 H 1.08998 * 108.81802 * 145.40984 * 19 18 17 39 39 H 1.08993 * 108.81457 * 27.12783 * 19 18 17 40 40 H 1.08999 * 115.55760 * 339.35174 * 21 20 4 41 41 H 1.09001 * 117.49651 * 145.02137 * 22 21 20 42 42 H 1.08999 * 117.49978 * 0.02562 * 22 21 20 43 43 H 1.08996 * 117.49567 * 107.48832 * 23 22 21 44 44 H 1.08992 * 117.49912 * 252.48864 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1298 -0.7019 1.2453 6 6 1.5801 -2.1530 1.2017 7 1 0.6523 -2.2585 1.7639 8 6 1.3542 -2.5650 -0.2301 9 1 1.6194 -1.8938 -1.0335 10 6 0.8089 -3.7991 -0.5145 11 7 0.4864 -4.6167 0.4638 12 14 0.5282 -4.3096 -2.2894 13 1 0.9711 -3.2186 -3.1942 14 1 1.3064 -5.5405 -2.5794 15 1 -0.9169 -4.5752 -2.5054 16 6 2.6732 -3.0395 1.8345 17 6 2.6436 -2.9944 3.2922 18 6 2.8910 -1.5718 3.8363 19 6 1.6175 -0.7819 3.7037 20 7 1.5541 -0.0016 2.4476 21 6 2.2341 1.2920 2.5966 22 6 2.0909 2.0152 3.9372 23 6 1.3586 2.5424 2.7015 24 1 -0.3634 0.6166 0.8221 25 1 -0.3634 0.4037 -0.9451 26 1 -0.3634 -1.0202 0.1228 27 1 1.8933 -0.5139 -0.8900 28 1 3.0943 1.4550 0.2764 29 1 1.9203 1.8703 -0.9954 30 1 1.4689 2.0298 0.7190 31 1 0.1024 -5.4848 0.2637 32 1 2.5257 -4.0694 1.5092 33 1 3.6493 -2.6969 1.4910 34 1 1.6693 -3.3407 3.6372 35 1 3.4137 -3.6599 3.6825 36 1 3.1805 -1.6262 4.8858 37 1 3.6841 -1.0929 3.2620 38 1 1.5395 -0.0963 4.5475 39 1 0.7726 -1.4697 3.7332 40 1 3.1855 1.3862 2.0729 41 1 2.9481 2.5853 4.2956 42 1 1.4924 1.5310 4.7089 43 1 0.2781 2.4051 2.6602 44 1 1.7338 3.4594 2.2473 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259802743.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:01:58 Heat of formation + Delta-G solvation = 26.022303 kcal Electronic energy + Delta-G solvation = -20814.350812 eV Core-core repulsion = 18153.290831 eV Total energy + Delta-G solvation = -2661.059981 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.08300 -37.76081 -36.44523 -34.64694 -32.82402 -31.37810 -28.78887 -27.25930 -26.00494 -25.09002 -23.39165 -22.43005 -21.31830 -20.84919 -19.62732 -17.96395 -17.25760 -16.92545 -16.22967 -15.66588 -15.47162 -14.84642 -14.61845 -14.44837 -14.31129 -13.89242 -13.78588 -13.25665 -12.95321 -12.83035 -12.68945 -12.63101 -12.55620 -12.36959 -12.00464 -11.91200 -11.84080 -11.45737 -11.42954 -11.39104 -10.96582 -10.90862 -10.70094 -10.56884 -10.28973 -10.08252 -8.74436 -8.01133 -6.05796 1.40067 1.43901 1.52726 2.48031 2.94671 3.15776 3.30249 3.94892 4.12044 4.14678 4.20851 4.29873 4.36401 4.40617 4.47680 4.55293 4.70483 4.73310 4.81790 4.93436 4.97185 5.01351 5.02907 5.10134 5.11925 5.18141 5.21313 5.30180 5.37041 5.37755 5.43596 5.47635 5.50382 5.57352 5.65909 5.75690 5.91183 5.94187 6.01766 6.17028 6.41394 6.58505 6.69150 7.05220 7.58683 9.07095 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.024251 B = 0.008899 C = 0.007062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.335227 B = 3145.517095 C = 3963.664630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.080 4.080 3 C -0.154 4.154 4 C 0.127 3.873 5 H 0.011 0.989 6 C 0.065 3.935 7 H 0.006 0.994 8 C -0.506 4.506 9 H 0.072 0.928 10 C 0.011 3.989 11 N -0.920 5.920 12 Si 0.937 3.063 13 H -0.265 1.265 14 H -0.288 1.288 15 H -0.287 1.287 16 C -0.106 4.106 17 C -0.104 4.104 18 C -0.130 4.130 19 C 0.061 3.939 20 N -0.519 5.519 21 C 0.008 3.992 22 C -0.181 4.181 23 C -0.163 4.163 24 H 0.051 0.949 25 H 0.035 0.965 26 H 0.041 0.959 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.085 0.915 31 H 0.253 0.747 32 H 0.040 0.960 33 H 0.022 0.978 34 H 0.039 0.961 35 H 0.047 0.953 36 H 0.081 0.919 37 H 0.053 0.947 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.097 0.903 43 H 0.087 0.913 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.971 12.246 5.700 14.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.098 4.098 3 C -0.210 4.210 4 C 0.020 3.980 5 H 0.028 0.972 6 C 0.046 3.954 7 H 0.024 0.976 8 C -0.545 4.545 9 H 0.090 0.910 10 C -0.186 4.186 11 N -0.561 5.561 12 Si 0.764 3.236 13 H -0.189 1.189 14 H -0.214 1.214 15 H -0.214 1.214 16 C -0.144 4.144 17 C -0.141 4.141 18 C -0.169 4.169 19 C -0.066 4.066 20 N -0.243 5.243 21 C -0.101 4.101 22 C -0.218 4.218 23 C -0.201 4.201 24 H 0.070 0.930 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.100 0.900 37 H 0.071 0.929 38 H 0.108 0.892 39 H 0.064 0.936 40 H 0.107 0.893 41 H 0.126 0.874 42 H 0.116 0.884 43 H 0.106 0.894 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 3.428 12.145 5.636 13.820 hybrid contribution 0.489 -1.375 -0.964 1.749 sum 3.917 10.770 4.672 12.375 Atomic orbital electron populations 1.21524 0.95445 1.01097 0.99204 1.21172 0.96505 0.95106 0.97045 1.22385 1.00390 0.96624 1.01636 1.21183 0.94068 0.94007 0.88728 0.97156 1.18313 0.93109 0.89352 0.94638 0.97555 1.21927 1.38881 1.00384 0.93288 0.90976 1.25630 0.96279 0.97185 0.99534 1.70103 1.44595 1.09056 1.32304 0.85823 0.77297 0.78128 0.82351 1.18906 1.21430 1.21377 1.20476 0.97674 1.01606 0.94683 1.20488 0.99971 0.96995 0.96673 1.21800 0.98594 0.95400 1.01129 1.21943 0.96386 0.96413 0.91837 1.61488 1.56890 1.03444 1.02458 1.22596 0.97423 0.88951 1.01104 1.23397 1.03502 1.03470 0.91469 1.23117 0.98922 0.96895 1.01173 0.92984 0.94585 0.94017 0.91998 0.93628 0.93757 0.89679 0.93743 0.94160 0.95929 0.94260 0.93410 0.90039 0.92859 0.89213 0.93636 0.89250 0.87421 0.88442 0.89416 0.87511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.57 8.50 71.98 0.61 -3.96 16 2 C -0.08 -3.07 2.22 -10.80 -0.02 -3.09 16 3 C -0.15 -4.67 7.72 71.98 0.56 -4.11 16 4 C 0.13 5.12 1.06 43.88 0.05 5.17 16 5 H 0.01 0.44 6.32 -2.39 -0.02 0.42 16 6 C 0.06 3.14 0.84 -11.92 -0.01 3.13 16 7 H 0.01 0.35 6.99 -2.39 -0.02 0.34 16 8 C -0.51 -26.77 6.08 25.60 0.16 -26.62 16 9 H 0.07 3.74 4.78 -2.91 -0.01 3.73 16 10 C 0.01 0.62 5.19 84.65 0.44 1.06 16 11 N -0.92 -53.62 11.96 21.45 0.26 -53.36 16 12 Si 0.94 44.04 29.54 68.60 2.03 46.07 16 13 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 14 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 15 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 16 C -0.11 -5.01 4.58 28.86 0.13 -4.88 16 17 C -0.10 -4.11 5.30 28.85 0.15 -3.95 16 18 C -0.13 -4.20 5.58 30.21 0.17 -4.03 16 19 C 0.06 2.01 5.04 85.26 0.43 2.44 16 20 N -0.52 -17.78 3.91 -849.90 -3.33 -21.10 16 21 C 0.01 0.22 3.42 44.92 0.15 0.38 16 22 C -0.18 -3.87 9.53 30.60 0.29 -3.58 16 23 C -0.16 -3.71 8.14 30.60 0.25 -3.46 16 24 H 0.05 1.94 7.69 -2.39 -0.02 1.92 16 25 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.04 1.96 5.90 -2.39 -0.01 1.95 16 27 H 0.06 2.66 5.39 -2.38 -0.01 2.65 16 28 H 0.04 1.31 6.53 -2.39 -0.02 1.30 16 29 H 0.04 1.24 8.14 -2.38 -0.02 1.22 16 30 H 0.08 2.38 4.03 -2.39 -0.01 2.37 16 31 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 32 H 0.04 2.18 6.48 -2.38 -0.02 2.17 16 33 H 0.02 1.02 7.51 -2.39 -0.02 1.00 16 34 H 0.04 1.68 7.52 -2.38 -0.02 1.66 16 35 H 0.05 1.73 8.14 -2.39 -0.02 1.72 16 36 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.05 1.77 7.02 -2.39 -0.02 1.75 16 38 H 0.09 2.43 5.19 -2.39 -0.01 2.41 16 39 H 0.05 1.74 6.59 -2.39 -0.02 1.73 16 40 H 0.09 2.50 6.06 -2.39 -0.01 2.49 16 41 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.10 2.10 6.17 -2.39 -0.01 2.08 16 43 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 44 H 0.11 2.02 8.10 -2.39 -0.02 2.00 16 Total: -1.00 -58.15 305.36 3.28 -54.87 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.97 Total: 19.02 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 3.35 Total: -45.50 kcal Atomic # 7 Polarization: -71.39 SS G_CDS: -3.07 Total: -74.46 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -58.15 3.28 -54.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259802743.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.896 kcal (2) G-P(sol) polarization free energy of solvation -58.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds