Wall clock time and date at job start Mon Mar 30 2020 07:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47079 * 2 1 4 4 N 1.46901 * 109.46716 * 119.99745 * 2 1 3 5 5 C 1.47995 * 111.00010 * 299.93362 * 4 2 1 6 6 C 1.50453 * 112.74316 * 168.61043 * 5 4 2 7 7 C 1.54313 * 108.48628 * 266.32239 * 6 5 4 8 8 C 1.45886 * 112.18725 * 78.53235 * 7 6 5 9 9 C 1.54303 * 112.18705 * 298.88010 * 8 7 6 10 10 H 1.09007 * 109.63232 * 318.82800 * 9 8 7 11 11 C 1.50702 * 109.62944 * 198.44116 * 9 8 7 12 12 H 1.08011 * 119.99721 * 239.99918 * 11 9 8 13 13 C 1.37874 * 120.00436 * 59.99835 * 11 9 8 14 14 N 1.31511 * 119.99886 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 120.00082 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47207 * 59.99598 * 15 13 11 17 17 H 1.48499 * 109.47303 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46719 * 299.99674 * 15 13 11 19 19 C 1.47777 * 110.87057 * 68.73980 * 4 2 1 20 20 H 1.09005 * 108.78395 * 154.28024 * 19 4 2 21 21 C 1.52996 * 108.85931 * 35.99120 * 19 4 2 22 22 C 1.52995 * 117.50028 * 129.57568 * 21 19 4 23 23 C 1.53000 * 60.00228 * 252.51330 * 22 21 19 24 24 H 1.09002 * 109.46975 * 293.72140 * 1 2 3 25 25 H 1.08996 * 109.46802 * 53.72167 * 1 2 3 26 26 H 1.08999 * 109.47067 * 173.72240 * 1 2 3 27 27 H 1.08996 * 109.46845 * 239.99350 * 2 1 3 28 28 H 1.08995 * 109.46998 * 294.41521 * 3 2 1 29 29 H 1.09000 * 109.47175 * 54.41389 * 3 2 1 30 30 H 1.09002 * 109.46743 * 174.41676 * 3 2 1 31 31 H 1.09000 * 108.81606 * 47.80110 * 5 4 2 32 32 H 1.09002 * 108.81465 * 289.41275 * 5 4 2 33 33 H 1.09002 * 109.63630 * 26.01796 * 6 5 4 34 34 H 1.09000 * 109.63625 * 146.42228 * 6 5 4 35 35 H 1.09000 * 108.94183 * 199.22918 * 7 6 5 36 36 H 1.08997 * 108.94138 * 317.92328 * 7 6 5 37 37 H 1.09004 * 108.93403 * 59.57946 * 8 7 6 38 38 H 1.08997 * 108.93707 * 178.17744 * 8 7 6 39 39 H 0.96999 * 119.99856 * 180.02562 * 14 13 11 40 40 H 1.09003 * 115.54590 * 275.28694 * 21 19 4 41 41 H 1.09001 * 117.49504 * 0.02562 * 22 21 19 42 42 H 1.08997 * 117.50148 * 145.01981 * 22 21 19 43 43 H 1.09001 * 117.49581 * 252.51354 * 23 22 21 44 44 H 1.08995 * 117.51788 * 107.48179 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.5464 -0.0204 2.4302 6 6 1.7890 -0.8381 3.6695 7 6 0.5209 -1.6660 3.9656 8 6 0.4200 -2.8440 3.1109 9 6 0.3388 -2.4735 1.6152 10 1 -0.3134 -1.6096 1.4868 11 6 -0.2072 -3.6405 0.8335 12 1 0.3842 -4.0889 0.0487 13 6 -1.4615 -4.1360 1.1201 14 7 -2.1814 -3.5904 2.0760 15 14 -2.1380 -5.5830 0.1515 16 1 -1.2419 -6.7548 0.3217 17 1 -3.4955 -5.9208 0.6496 18 1 -2.2145 -5.2231 -1.2872 19 6 1.7231 -2.1385 1.1305 20 1 2.4489 -2.6752 1.7415 21 6 1.8639 -2.6036 -0.3202 22 6 2.7283 -3.8377 -0.5857 23 6 3.2350 -2.4494 -0.9815 24 1 -0.3633 0.4134 0.9409 25 1 -0.3633 0.6081 -0.8284 26 1 -0.3633 -1.0215 -0.1124 27 1 1.8934 -0.5139 -0.8899 28 1 1.7607 1.9266 -0.9357 29 1 1.5974 1.9844 0.8357 30 1 3.1255 1.4440 0.1000 31 1 0.4770 0.1693 2.3381 32 1 2.0646 0.9332 2.5314 33 1 2.6338 -1.5076 3.5071 34 1 2.0023 -0.1764 4.5091 35 1 0.5422 -1.9857 5.0074 36 1 -0.3562 -1.0389 3.8063 37 1 1.2948 -3.4741 3.2724 38 1 -0.4733 -3.4049 3.3855 39 1 -3.0637 -3.9392 2.2778 40 1 0.9838 -2.4608 -0.9472 41 1 3.1963 -4.3186 0.2734 42 1 2.4170 -4.5074 -1.3873 43 1 3.2569 -2.2056 -2.0437 44 1 4.0365 -2.0163 -0.3831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259833887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:27 Heat of formation + Delta-G solvation = 30.612015 kcal Electronic energy + Delta-G solvation = -20945.553939 eV Core-core repulsion = 18284.692982 eV Total energy + Delta-G solvation = -2660.860957 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.71177 -36.03142 -35.00663 -32.88990 -30.57583 -30.20419 -26.69783 -26.33228 -24.57152 -23.47866 -21.73149 -20.52764 -20.18218 -19.34858 -17.69856 -16.27830 -15.46715 -15.14134 -14.73256 -14.18168 -14.05477 -13.50828 -13.25177 -12.75591 -12.62958 -12.22093 -12.06701 -11.84762 -11.45793 -11.37623 -11.00820 -10.92951 -10.89262 -10.75378 -10.73832 -10.50588 -10.44083 -9.95936 -9.84682 -9.74397 -9.48221 -9.33565 -9.18964 -8.81107 -8.50984 -8.20551 -7.23228 -5.92953 -3.97781 3.32386 3.37736 3.40429 4.39211 4.48940 4.83055 5.32493 5.40161 5.47284 5.59224 5.67290 5.73157 5.77699 5.81509 5.86375 5.97655 6.09762 6.17751 6.24376 6.25758 6.30145 6.36022 6.41916 6.45266 6.48848 6.54094 6.66144 6.67527 6.77980 6.79921 6.82268 6.99807 7.10752 7.13428 7.25165 7.40815 7.50641 7.75413 7.92535 7.93857 8.14797 8.22109 8.58053 9.07733 9.66271 11.11869 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.010014 C = 0.008368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.114852 B = 2795.374522 C = 3345.168520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.078 3.922 3 C -0.142 4.142 4 N -0.540 5.540 5 C 0.062 3.938 6 C -0.120 4.120 7 C -0.106 4.106 8 C -0.119 4.119 9 C 0.025 3.975 10 H 0.045 0.955 11 C -0.506 4.506 12 H 0.069 0.931 13 C 0.060 3.940 14 N -0.889 5.889 15 Si 0.882 3.118 16 H -0.278 1.278 17 H -0.290 1.290 18 H -0.279 1.279 19 C 0.130 3.870 20 H 0.059 0.941 21 C -0.103 4.103 22 C -0.176 4.176 23 C -0.196 4.196 24 H 0.053 0.947 25 H 0.040 0.960 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.055 0.945 31 H 0.041 0.959 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.035 0.965 36 H 0.051 0.949 37 H 0.022 0.978 38 H 0.090 0.910 39 H 0.257 0.743 40 H 0.106 0.894 41 H 0.086 0.914 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.151 6.070 -1.800 9.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.030 4.030 3 C -0.200 4.200 4 N -0.264 5.264 5 C -0.065 4.065 6 C -0.158 4.158 7 C -0.144 4.144 8 C -0.157 4.157 9 C 0.005 3.995 10 H 0.063 0.937 11 C -0.545 4.545 12 H 0.087 0.913 13 C -0.140 4.140 14 N -0.529 5.529 15 Si 0.710 3.290 16 H -0.204 1.204 17 H -0.216 1.216 18 H -0.205 1.205 19 C 0.023 3.977 20 H 0.077 0.923 21 C -0.122 4.122 22 C -0.214 4.214 23 C -0.233 4.233 24 H 0.072 0.928 25 H 0.059 0.941 26 H 0.106 0.894 27 H 0.106 0.894 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.070 0.930 37 H 0.041 0.959 38 H 0.108 0.892 39 H 0.067 0.933 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.101 0.899 43 H 0.096 0.904 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 7.461 6.091 -1.678 9.777 hybrid contribution -1.418 -0.998 -0.401 1.780 sum 6.043 5.094 -2.079 8.172 Atomic orbital electron populations 1.22755 0.97635 1.04176 1.00686 1.21666 0.92887 0.93868 0.94628 1.21867 1.01115 0.96388 1.00580 1.62206 1.60398 1.02911 1.00928 1.21740 0.98723 0.96445 0.89634 1.21451 0.99342 0.98795 0.96222 1.20603 0.96241 0.98801 0.98745 1.20601 1.01593 0.96017 0.97500 1.19176 0.91036 0.97599 0.91656 0.93741 1.21462 1.00294 1.15080 1.17615 0.91320 1.24968 0.97230 0.96653 0.95159 1.69899 1.11161 1.41449 1.30369 0.86823 0.78055 0.83622 0.80466 1.20421 1.21600 1.20492 1.21117 0.98589 0.85205 0.92787 0.92262 1.22282 0.92597 0.99747 0.97535 1.22856 1.04928 0.90962 1.02611 1.22990 0.99918 1.00590 0.99812 0.92793 0.94059 0.89367 0.89358 0.93283 0.93345 0.92554 0.94080 0.92668 0.91635 0.92878 0.94575 0.93037 0.95944 0.89159 0.93278 0.87602 0.89585 0.89935 0.90371 0.89213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.49 7.48 37.16 0.28 -3.21 16 2 C 0.08 1.29 2.40 -67.71 -0.16 1.13 16 3 C -0.14 -1.98 8.79 37.16 0.33 -1.65 16 4 N -0.54 -9.59 4.54 -220.17 -1.00 -10.58 16 5 C 0.06 1.07 4.18 -4.49 -0.02 1.05 16 6 C -0.12 -2.07 5.63 -27.32 -0.15 -2.23 16 7 C -0.11 -2.11 5.30 -29.41 -0.16 -2.27 16 8 C -0.12 -2.74 4.54 -29.42 -0.13 -2.87 16 9 C 0.02 0.57 0.82 -92.37 -0.08 0.49 16 10 H 0.04 1.11 4.14 -51.93 -0.22 0.89 16 11 C -0.51 -12.88 7.43 -34.44 -0.26 -13.13 16 12 H 0.07 1.71 5.00 -52.48 -0.26 1.45 16 13 C 0.06 1.61 5.19 -17.82 -0.09 1.52 16 14 N -0.89 -24.65 11.38 55.43 0.63 -24.02 16 15 Si 0.88 20.93 29.54 -169.99 -5.02 15.91 16 16 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 19 C 0.13 2.58 1.73 -68.51 -0.12 2.46 16 20 H 0.06 1.26 6.31 -51.93 -0.33 0.93 16 21 C -0.10 -1.94 1.27 -90.62 -0.12 -2.05 16 22 C -0.18 -3.07 9.30 -26.73 -0.25 -3.32 16 23 C -0.20 -3.14 8.86 -26.73 -0.24 -3.38 16 24 H 0.05 1.00 5.67 -51.93 -0.29 0.71 16 25 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.09 1.87 4.85 -51.93 -0.25 1.62 16 27 H 0.09 1.48 5.16 -51.93 -0.27 1.21 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.67 6.96 -51.93 -0.36 0.31 16 30 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.04 0.78 4.19 -51.93 -0.22 0.56 16 32 H 0.05 0.86 7.03 -51.93 -0.36 0.50 16 33 H 0.06 1.17 7.08 -51.93 -0.37 0.80 16 34 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.05 1.08 7.51 -51.93 -0.39 0.69 16 37 H 0.02 0.50 7.52 -51.93 -0.39 0.11 16 38 H 0.09 2.38 5.81 -51.93 -0.30 2.08 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.11 2.17 6.36 -51.93 -0.33 1.84 16 41 H 0.09 1.51 8.04 -51.93 -0.42 1.09 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 304.81 15.07 4.59 4.59 Total: -1.00 -25.78 304.81 -9.24 -35.02 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -7.28 Total: 6.55 kcal Atomic # 6 Polarization: -26.31 SS G_CDS: -1.16 Total: -27.47 kcal Atomic # 7 Polarization: -34.23 SS G_CDS: -0.37 Total: -34.60 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -25.78 -9.24 -35.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259833887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.630 kcal (2) G-P(sol) polarization free energy of solvation -25.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.018 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds