Wall clock time and date at job start Mon Mar 30 2020 07:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52998 * 109.47079 * 2 1 4 4 N 1.46901 * 109.46716 * 119.99745 * 2 1 3 5 5 C 1.47995 * 111.00010 * 299.93362 * 4 2 1 6 6 C 1.50453 * 112.74316 * 168.61043 * 5 4 2 7 7 C 1.54313 * 108.48628 * 266.32239 * 6 5 4 8 8 C 1.45886 * 112.18725 * 78.53235 * 7 6 5 9 9 C 1.54303 * 112.18705 * 298.88010 * 8 7 6 10 10 H 1.09007 * 109.63232 * 318.82800 * 9 8 7 11 11 C 1.50702 * 109.62944 * 198.44116 * 9 8 7 12 12 H 1.08011 * 119.99721 * 239.99918 * 11 9 8 13 13 C 1.37874 * 120.00436 * 59.99835 * 11 9 8 14 14 N 1.31511 * 119.99886 * 359.97438 * 13 11 9 15 15 Si 1.86804 * 120.00082 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47207 * 59.99598 * 15 13 11 17 17 H 1.48499 * 109.47303 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46719 * 299.99674 * 15 13 11 19 19 C 1.47777 * 110.87057 * 68.73980 * 4 2 1 20 20 H 1.09005 * 108.78395 * 154.28024 * 19 4 2 21 21 C 1.52996 * 108.85931 * 35.99120 * 19 4 2 22 22 C 1.52995 * 117.50028 * 129.57568 * 21 19 4 23 23 C 1.53000 * 60.00228 * 252.51330 * 22 21 19 24 24 H 1.09002 * 109.46975 * 293.72140 * 1 2 3 25 25 H 1.08996 * 109.46802 * 53.72167 * 1 2 3 26 26 H 1.08999 * 109.47067 * 173.72240 * 1 2 3 27 27 H 1.08996 * 109.46845 * 239.99350 * 2 1 3 28 28 H 1.08995 * 109.46998 * 294.41521 * 3 2 1 29 29 H 1.09000 * 109.47175 * 54.41389 * 3 2 1 30 30 H 1.09002 * 109.46743 * 174.41676 * 3 2 1 31 31 H 1.09000 * 108.81606 * 47.80110 * 5 4 2 32 32 H 1.09002 * 108.81465 * 289.41275 * 5 4 2 33 33 H 1.09002 * 109.63630 * 26.01796 * 6 5 4 34 34 H 1.09000 * 109.63625 * 146.42228 * 6 5 4 35 35 H 1.09000 * 108.94183 * 199.22918 * 7 6 5 36 36 H 1.08997 * 108.94138 * 317.92328 * 7 6 5 37 37 H 1.09004 * 108.93403 * 59.57946 * 8 7 6 38 38 H 1.08997 * 108.93707 * 178.17744 * 8 7 6 39 39 H 0.96999 * 119.99856 * 180.02562 * 14 13 11 40 40 H 1.09003 * 115.54590 * 275.28694 * 21 19 4 41 41 H 1.09001 * 117.49504 * 0.02562 * 22 21 19 42 42 H 1.08997 * 117.50148 * 145.01981 * 22 21 19 43 43 H 1.09001 * 117.49581 * 252.51354 * 23 22 21 44 44 H 1.08995 * 117.51788 * 107.48179 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0197 -0.6925 1.1995 5 6 1.5464 -0.0204 2.4302 6 6 1.7890 -0.8381 3.6695 7 6 0.5209 -1.6660 3.9656 8 6 0.4200 -2.8440 3.1109 9 6 0.3388 -2.4735 1.6152 10 1 -0.3134 -1.6096 1.4868 11 6 -0.2072 -3.6405 0.8335 12 1 0.3842 -4.0889 0.0487 13 6 -1.4615 -4.1360 1.1201 14 7 -2.1814 -3.5904 2.0760 15 14 -2.1380 -5.5830 0.1515 16 1 -1.2419 -6.7548 0.3217 17 1 -3.4955 -5.9208 0.6496 18 1 -2.2145 -5.2231 -1.2872 19 6 1.7231 -2.1385 1.1305 20 1 2.4489 -2.6752 1.7415 21 6 1.8639 -2.6036 -0.3202 22 6 2.7283 -3.8377 -0.5857 23 6 3.2350 -2.4494 -0.9815 24 1 -0.3633 0.4134 0.9409 25 1 -0.3633 0.6081 -0.8284 26 1 -0.3633 -1.0215 -0.1124 27 1 1.8934 -0.5139 -0.8899 28 1 1.7607 1.9266 -0.9357 29 1 1.5974 1.9844 0.8357 30 1 3.1255 1.4440 0.1000 31 1 0.4770 0.1693 2.3381 32 1 2.0646 0.9332 2.5314 33 1 2.6338 -1.5076 3.5071 34 1 2.0023 -0.1764 4.5091 35 1 0.5422 -1.9857 5.0074 36 1 -0.3562 -1.0389 3.8063 37 1 1.2948 -3.4741 3.2724 38 1 -0.4733 -3.4049 3.3855 39 1 -3.0637 -3.9392 2.2778 40 1 0.9838 -2.4608 -0.9472 41 1 3.1963 -4.3186 0.2734 42 1 2.4170 -4.5074 -1.3873 43 1 3.2569 -2.2056 -2.0437 44 1 4.0365 -2.0163 -0.3831 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259833887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:27 Heat of formation + Delta-G solvation = 17.370315 kcal Electronic energy + Delta-G solvation = -20946.128142 eV Core-core repulsion = 18284.692982 eV Total energy + Delta-G solvation = -2661.435160 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.23840 -37.47463 -36.57248 -34.70416 -32.25349 -31.72848 -28.21364 -27.87965 -26.13455 -25.22395 -23.09321 -21.99417 -21.66939 -21.11205 -19.18749 -18.14863 -17.04466 -16.71970 -16.30463 -15.84451 -15.60418 -15.01677 -14.66751 -14.32023 -14.23259 -13.86807 -13.51995 -13.36482 -13.03243 -12.84138 -12.69216 -12.62846 -12.42149 -12.28689 -12.20172 -12.10870 -11.98737 -11.61589 -11.34345 -11.25718 -11.22163 -10.94300 -10.80854 -10.36493 -10.29738 -10.17803 -8.75523 -7.96539 -6.05954 1.40435 1.41844 1.47308 2.47590 3.01366 3.28833 3.43666 3.94427 4.07138 4.15807 4.28091 4.32714 4.40040 4.43549 4.46736 4.61133 4.65001 4.76773 4.83182 4.87126 4.92269 4.94025 5.00342 5.08617 5.12182 5.13699 5.19078 5.24681 5.30042 5.38296 5.44006 5.46782 5.53025 5.57968 5.64792 5.71947 5.73081 5.82141 6.11542 6.19655 6.41156 6.57887 6.71042 7.08866 7.59964 9.05982 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.019094 B = 0.010014 C = 0.008368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.114852 B = 2795.374522 C = 3345.168520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.078 3.922 3 C -0.134 4.134 4 N -0.533 5.533 5 C 0.060 3.940 6 C -0.110 4.110 7 C -0.103 4.103 8 C -0.114 4.114 9 C 0.029 3.971 10 H 0.024 0.976 11 C -0.507 4.507 12 H 0.072 0.928 13 C 0.011 3.989 14 N -0.918 5.918 15 Si 0.934 3.066 16 H -0.275 1.275 17 H -0.294 1.294 18 H -0.274 1.274 19 C 0.141 3.859 20 H 0.047 0.953 21 C -0.124 4.124 22 C -0.182 4.182 23 C -0.162 4.162 24 H 0.042 0.958 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.089 0.911 28 H 0.066 0.934 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.022 0.978 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.033 0.967 37 H 0.018 0.982 38 H 0.052 0.948 39 H 0.252 0.748 40 H 0.085 0.915 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.099 0.901 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.179 7.248 -2.683 11.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.030 4.030 3 C -0.191 4.191 4 N -0.257 5.257 5 C -0.067 4.067 6 C -0.148 4.148 7 C -0.141 4.141 8 C -0.152 4.152 9 C 0.010 3.990 10 H 0.042 0.958 11 C -0.546 4.546 12 H 0.090 0.910 13 C -0.186 4.186 14 N -0.559 5.559 15 Si 0.761 3.239 16 H -0.201 1.201 17 H -0.220 1.220 18 H -0.200 1.200 19 C 0.033 3.967 20 H 0.065 0.935 21 C -0.142 4.142 22 C -0.220 4.220 23 C -0.199 4.199 24 H 0.061 0.939 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.107 0.893 28 H 0.085 0.915 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.040 0.960 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.103 0.897 41 H 0.101 0.899 42 H 0.106 0.894 43 H 0.117 0.883 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 9.502 7.271 -2.573 12.238 hybrid contribution -2.065 -1.360 -0.130 2.476 sum 7.436 5.910 -2.704 9.876 Atomic orbital electron populations 1.22628 0.99095 1.01887 1.00735 1.21746 0.91557 0.95666 0.94037 1.21796 1.01566 0.94099 1.01682 1.62277 1.59945 1.01759 1.01747 1.21813 0.97932 0.97494 0.89424 1.21388 0.97246 0.98733 0.97436 1.20505 0.97272 0.97628 0.98656 1.20499 0.99403 0.96971 0.98331 1.19088 0.92654 0.95904 0.91390 0.95789 1.21867 1.00117 1.15279 1.17318 0.91038 1.25613 0.97931 0.98913 0.96137 1.70046 1.11185 1.42797 1.31886 0.85987 0.77181 0.81235 0.79465 1.20064 1.22009 1.19956 1.20802 0.95838 0.86776 0.93257 0.93511 1.22065 0.93532 1.01844 0.96777 1.22919 1.04711 0.91523 1.02829 1.22986 0.97509 0.98604 1.00763 0.93939 0.92303 0.93200 0.89282 0.91534 0.93195 0.91572 0.95994 0.89974 0.91949 0.89753 0.93470 0.94800 0.96361 0.92960 0.93869 0.89698 0.89927 0.89365 0.88267 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.62 7.48 71.99 0.54 -6.08 16 2 C 0.08 2.44 2.40 44.92 0.11 2.55 16 3 C -0.13 -3.27 8.79 71.98 0.63 -2.64 16 4 N -0.53 -18.09 4.54 -850.48 -3.86 -21.95 16 5 C 0.06 1.98 4.18 85.27 0.36 2.34 16 6 C -0.11 -3.61 5.63 30.22 0.17 -3.44 16 7 C -0.10 -4.11 5.30 28.86 0.15 -3.96 16 8 C -0.11 -5.40 4.54 28.85 0.13 -5.27 16 9 C 0.03 1.37 0.82 -11.92 -0.01 1.37 16 10 H 0.02 1.25 4.14 -2.38 -0.01 1.24 16 11 C -0.51 -26.49 7.43 25.60 0.19 -26.30 16 12 H 0.07 3.62 5.00 -2.91 -0.01 3.61 16 13 C 0.01 0.62 5.19 84.65 0.44 1.06 16 14 N -0.92 -52.97 11.38 21.45 0.24 -52.72 16 15 Si 0.93 43.86 29.54 68.60 2.03 45.88 16 16 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 17 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 18 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 19 C 0.14 5.56 1.73 43.92 0.08 5.63 16 20 H 0.05 1.96 6.31 -2.38 -0.02 1.95 16 21 C -0.12 -4.55 1.27 -10.80 -0.01 -4.56 16 22 C -0.18 -6.10 9.30 30.59 0.28 -5.81 16 23 C -0.16 -4.74 8.86 30.60 0.27 -4.47 16 24 H 0.04 1.59 5.67 -2.39 -0.01 1.58 16 25 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.05 2.17 4.85 -2.39 -0.01 2.16 16 27 H 0.09 2.78 5.16 -2.39 -0.01 2.77 16 28 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.21 6.96 -2.39 -0.02 1.19 16 30 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 31 H 0.02 0.82 4.19 -2.39 -0.01 0.81 16 32 H 0.08 2.29 7.03 -2.39 -0.02 2.27 16 33 H 0.06 2.11 7.08 -2.39 -0.02 2.09 16 34 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 35 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.03 1.45 7.51 -2.39 -0.02 1.43 16 37 H 0.02 0.84 7.52 -2.39 -0.02 0.82 16 38 H 0.05 2.88 5.81 -2.39 -0.01 2.86 16 39 H 0.25 14.20 8.31 -92.71 -0.77 13.42 16 40 H 0.08 3.50 6.36 -2.39 -0.02 3.48 16 41 H 0.08 2.81 8.04 -2.39 -0.02 2.79 16 42 H 0.09 2.82 8.14 -2.39 -0.02 2.81 16 43 H 0.10 2.52 8.14 -2.39 -0.02 2.51 16 44 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 Total: -1.00 -56.88 304.81 2.71 -54.17 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 0.97 Total: 24.20 kcal Atomic # 6 Polarization: -52.91 SS G_CDS: 3.33 Total: -49.59 kcal Atomic # 7 Polarization: -71.05 SS G_CDS: -3.62 Total: -74.67 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.88 kcal Total: -56.88 2.71 -54.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259833887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.543 kcal (2) G-P(sol) polarization free energy of solvation -56.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds