Wall clock time and date at job start Mon Mar 30 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.46827 * 2 1 4 4 C 1.52998 * 109.47528 * 120.00064 * 2 1 3 5 5 H 1.08997 * 109.87794 * 67.75910 * 4 2 1 6 6 C 1.54329 * 109.88607 * 306.56750 * 4 2 1 7 7 C 1.55145 * 103.01625 * 218.30851 * 6 4 2 8 8 C 1.54913 * 101.65309 * 35.65248 * 7 6 4 9 9 N 1.47440 * 109.89295 * 188.79828 * 4 2 1 10 10 C 1.46902 * 110.99822 * 356.14544 * 9 4 2 11 11 H 1.09004 * 110.01929 * 79.62307 * 10 9 4 12 12 C 1.54269 * 110.03259 * 318.18725 * 10 9 4 13 13 C 1.54890 * 104.19565 * 217.10370 * 12 10 9 14 14 C 1.54896 * 102.74793 * 37.94242 * 13 12 10 15 15 C 1.53869 * 110.03303 * 201.01782 * 10 9 4 16 16 H 1.09003 * 110.03434 * 238.56564 * 15 10 9 17 17 C 1.50699 * 110.03123 * 359.95457 * 15 10 9 18 18 H 1.07993 * 120.00248 * 5.45343 * 17 15 10 19 19 C 1.37881 * 119.99585 * 185.45855 * 17 15 10 20 20 N 1.31515 * 120.00353 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99557 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47217 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46940 * 120.00203 * 21 19 17 24 24 H 1.48506 * 109.46947 * 239.99525 * 21 19 17 25 25 H 1.09008 * 109.47559 * 299.99713 * 1 2 3 26 26 H 1.09001 * 109.47837 * 60.00101 * 1 2 3 27 27 H 1.09000 * 109.46952 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47216 * 240.00235 * 2 1 3 29 29 H 1.08999 * 109.46740 * 239.99786 * 3 2 1 30 30 H 1.08993 * 109.47358 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47014 * 119.99742 * 3 2 1 32 32 H 1.09002 * 110.70429 * 336.69026 * 6 4 2 33 33 H 1.08992 * 110.70614 * 99.92529 * 6 4 2 34 34 H 1.08994 * 110.99032 * 277.55849 * 7 6 4 35 35 H 1.09003 * 111.02288 * 153.75640 * 7 6 4 36 36 H 1.08997 * 110.36981 * 204.10145 * 8 7 6 37 37 H 1.08999 * 110.46221 * 81.80530 * 8 7 6 38 38 H 1.09006 * 110.48297 * 335.78208 * 12 10 9 39 39 H 1.09003 * 110.48955 * 98.42522 * 12 10 9 40 40 H 1.08998 * 110.75803 * 279.62678 * 13 12 10 41 41 H 1.09003 * 110.75403 * 156.25616 * 13 12 10 42 42 H 1.08992 * 110.48491 * 203.37630 * 14 13 12 43 43 H 1.08996 * 110.59852 * 80.78694 * 14 13 12 44 44 H 0.96998 * 119.99814 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7978 -1.7823 1.1894 6 6 1.3999 -0.1034 2.5102 7 6 2.5630 -0.1210 3.5369 8 6 3.7849 0.1708 2.6304 9 7 3.4990 -0.5457 1.3692 10 6 4.0380 0.1854 0.2147 11 1 3.8607 1.2543 0.3339 12 6 3.3779 -0.3189 -1.0852 13 6 4.5219 -0.2884 -2.1289 14 6 5.7499 -0.7466 -1.3034 15 6 5.5461 -0.0865 0.0759 16 1 6.1007 0.8505 0.1270 17 6 6.0053 -1.0180 1.1679 18 1 5.2847 -1.4563 1.8423 19 6 7.3456 -1.3105 1.3061 20 7 8.2233 -0.7771 0.4846 21 14 7.9149 -2.4646 2.6601 22 1 6.7407 -2.9263 3.4432 23 1 8.5997 -3.6360 2.0567 24 1 8.8572 -1.7485 3.5572 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 2.6454 1.6138 -0.8900 30 1 1.1921 2.1276 0.0005 31 1 2.6454 1.6139 0.8900 32 1 1.0731 0.9181 2.3155 33 1 0.5683 -0.7153 2.8595 34 1 2.6520 -1.0991 4.0093 35 1 2.4360 0.6616 4.2850 36 1 4.6966 -0.2140 3.0872 37 1 3.8759 1.2413 2.4465 38 1 3.0071 -1.3357 -0.9552 39 1 2.5693 0.3474 -1.3859 40 1 4.6688 0.7216 -2.5116 41 1 4.3214 -0.9856 -2.9424 42 1 6.6724 -0.3924 -1.7634 43 1 5.7646 -1.8323 -1.2083 44 1 9.1661 -0.9832 0.5816 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259873860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:00 Heat of formation + Delta-G solvation = 124.119829 kcal Electronic energy + Delta-G solvation = -20967.738989 eV Core-core repulsion = 18310.932836 eV Total energy + Delta-G solvation = -2656.806153 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.25942 -36.12880 -34.75181 -32.07248 -30.82844 -28.48714 -27.89261 -26.66919 -25.19197 -24.19141 -22.51617 -20.59983 -19.43134 -18.70766 -18.43417 -16.38840 -15.74479 -15.43591 -14.64065 -14.15541 -13.84378 -13.61565 -13.08685 -12.62947 -12.49502 -12.31527 -12.19893 -11.85837 -11.70217 -11.44811 -11.14026 -10.91513 -10.80120 -10.62974 -10.56418 -10.41974 -10.33247 -10.12258 -9.99084 -9.75382 -9.50789 -9.36636 -8.92029 -8.46657 -8.39132 -8.15606 -7.09428 -5.77502 -3.72600 3.41663 3.50268 3.55206 4.62668 4.75383 5.01467 5.11253 5.21347 5.32265 5.43627 5.51528 5.53559 5.72438 5.76346 5.79064 5.92295 5.95108 5.97539 6.03207 6.06256 6.11801 6.19107 6.26485 6.33217 6.36153 6.45265 6.49580 6.56683 6.61806 6.69506 6.74778 6.79110 6.90054 6.96797 7.13219 7.29479 7.53172 7.75381 7.90887 8.10026 8.19477 8.28706 8.83664 9.39251 9.89253 11.34120 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023536 B = 0.009218 C = 0.007219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.385896 B = 3036.839698 C = 3877.529295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.186 4.186 3 C -0.165 4.165 4 C 0.076 3.924 5 H 0.072 0.928 6 C -0.135 4.135 7 C -0.135 4.135 8 C 0.052 3.948 9 N -0.487 5.487 10 C 0.066 3.934 11 H 0.054 0.946 12 C -0.150 4.150 13 C -0.143 4.143 14 C -0.092 4.092 15 C 0.050 3.950 16 H 0.023 0.977 17 C -0.484 4.484 18 H 0.090 0.910 19 C 0.049 3.951 20 N -0.903 5.903 21 Si 0.880 3.120 22 H -0.273 1.273 23 H -0.290 1.290 24 H -0.291 1.291 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.154 0.846 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.094 0.906 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.101 0.899 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.552 2.920 -0.224 13.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.204 4.204 3 C -0.221 4.221 4 C -0.033 4.033 5 H 0.090 0.910 6 C -0.174 4.174 7 C -0.173 4.173 8 C -0.076 4.076 9 N -0.210 5.210 10 C -0.042 4.042 11 H 0.071 0.929 12 C -0.186 4.186 13 C -0.181 4.181 14 C -0.131 4.131 15 C 0.031 3.969 16 H 0.041 0.959 17 C -0.523 4.523 18 H 0.107 0.893 19 C -0.150 4.150 20 N -0.544 5.544 21 Si 0.710 3.290 22 H -0.198 1.198 23 H -0.217 1.217 24 H -0.217 1.217 25 H 0.065 0.935 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.170 0.830 29 H 0.093 0.907 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.118 0.882 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.107 2.434 -0.229 13.333 hybrid contribution 0.139 0.094 0.808 0.826 sum -12.968 2.528 0.579 13.225 Atomic orbital electron populations 1.21929 0.96436 1.00886 1.00754 1.23850 0.95026 0.97492 1.04001 1.22934 1.00054 0.95811 1.03318 1.22517 0.89213 0.98760 0.92762 0.90997 1.22872 0.97748 1.00576 0.96162 1.22775 0.95640 1.01435 0.97489 1.23085 0.98338 0.95874 0.90294 1.63913 1.07636 1.47595 1.01832 1.23202 0.98117 0.95053 0.87820 0.92906 1.24064 0.97150 1.01400 0.95951 1.22795 0.98520 0.99352 0.97472 1.22286 0.94276 0.99978 0.96511 1.19315 0.87881 0.96297 0.93378 0.95857 1.21676 0.91623 1.25338 1.13627 0.89267 1.25066 0.97367 0.96479 0.96039 1.70006 1.01392 1.45076 1.37917 0.86716 0.78526 0.81140 0.82640 1.19780 1.21658 1.21740 0.93467 0.93464 0.93294 0.83007 0.90679 0.94689 0.91165 0.91807 0.92169 0.91274 0.92025 0.88834 0.94881 0.91173 0.88175 0.93253 0.93691 0.93393 0.93099 0.93809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.54 37.15 0.32 -1.33 16 2 C -0.19 -2.54 1.82 -90.62 -0.16 -2.71 16 3 C -0.17 -2.30 6.49 37.16 0.24 -2.06 16 4 C 0.08 1.19 2.74 -66.72 -0.18 1.01 16 5 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 6 C -0.14 -1.87 4.94 -24.90 -0.12 -2.00 16 7 C -0.14 -2.02 7.08 -24.59 -0.17 -2.20 16 8 C 0.05 0.95 5.23 -2.30 -0.01 0.94 16 9 N -0.49 -9.24 3.34 -214.11 -0.71 -9.96 16 10 C 0.07 1.28 1.71 -66.59 -0.11 1.17 16 11 H 0.05 1.01 4.05 -51.93 -0.21 0.80 16 12 C -0.15 -2.55 3.20 -25.07 -0.08 -2.63 16 13 C -0.14 -2.65 6.91 -24.73 -0.17 -2.82 16 14 C -0.09 -2.16 5.75 -25.07 -0.14 -2.30 16 15 C 0.05 1.22 2.68 -90.65 -0.24 0.98 16 16 H 0.02 0.64 8.14 -51.93 -0.42 0.21 16 17 C -0.48 -12.92 6.82 -34.44 -0.23 -13.16 16 18 H 0.09 2.37 4.81 -52.49 -0.25 2.12 16 19 C 0.05 1.38 5.36 -17.82 -0.10 1.29 16 20 N -0.90 -26.60 12.83 55.43 0.71 -25.89 16 21 Si 0.88 21.90 29.54 -169.99 -5.02 16.88 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 25 H 0.05 0.54 6.65 -51.92 -0.35 0.19 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.15 2.15 3.05 -118.53 -0.36 1.79 16 29 H 0.07 1.07 5.21 -51.93 -0.27 0.80 16 30 H 0.03 0.44 7.59 -51.93 -0.39 0.04 16 31 H 0.07 1.10 3.61 -51.93 -0.19 0.91 16 32 H 0.06 0.86 6.31 -51.93 -0.33 0.53 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.96 6.48 -51.93 -0.34 1.62 16 37 H 0.03 0.61 6.74 -51.93 -0.35 0.26 16 38 H 0.07 1.24 6.52 -51.93 -0.34 0.90 16 39 H 0.10 1.46 3.16 -56.29 -0.18 1.28 16 40 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 43 H 0.05 1.28 7.85 -51.93 -0.41 0.87 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 298.06 15.07 4.49 4.49 Total: -1.00 -28.23 298.06 -9.04 -37.27 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -7.32 Total: 3.03 kcal Atomic # 6 Polarization: -24.64 SS G_CDS: -1.18 Total: -25.82 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.00 Total: -35.85 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.23 -9.04 -37.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259873860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.389 kcal (2) G-P(sol) polarization free energy of solvation -28.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds