Wall clock time and date at job start Mon Mar 30 2020 05:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.46827 * 2 1 4 4 C 1.52998 * 109.47528 * 120.00064 * 2 1 3 5 5 H 1.08997 * 109.87794 * 67.75910 * 4 2 1 6 6 C 1.54329 * 109.88607 * 306.56750 * 4 2 1 7 7 C 1.55145 * 103.01625 * 218.30851 * 6 4 2 8 8 C 1.54913 * 101.65309 * 35.65248 * 7 6 4 9 9 N 1.47440 * 109.89295 * 188.79828 * 4 2 1 10 10 C 1.46902 * 110.99822 * 356.14544 * 9 4 2 11 11 H 1.09004 * 110.01929 * 79.62307 * 10 9 4 12 12 C 1.54269 * 110.03259 * 318.18725 * 10 9 4 13 13 C 1.54890 * 104.19565 * 217.10370 * 12 10 9 14 14 C 1.54896 * 102.74793 * 37.94242 * 13 12 10 15 15 C 1.53869 * 110.03303 * 201.01782 * 10 9 4 16 16 H 1.09003 * 110.03434 * 238.56564 * 15 10 9 17 17 C 1.50699 * 110.03123 * 359.95457 * 15 10 9 18 18 H 1.07993 * 120.00248 * 5.45343 * 17 15 10 19 19 C 1.37881 * 119.99585 * 185.45855 * 17 15 10 20 20 N 1.31515 * 120.00353 * 359.97438 * 19 17 15 21 21 Si 1.86805 * 119.99557 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47217 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46940 * 120.00203 * 21 19 17 24 24 H 1.48506 * 109.46947 * 239.99525 * 21 19 17 25 25 H 1.09008 * 109.47559 * 299.99713 * 1 2 3 26 26 H 1.09001 * 109.47837 * 60.00101 * 1 2 3 27 27 H 1.09000 * 109.46952 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47216 * 240.00235 * 2 1 3 29 29 H 1.08999 * 109.46740 * 239.99786 * 3 2 1 30 30 H 1.08993 * 109.47358 * 0.02562 * 3 2 1 31 31 H 1.09002 * 109.47014 * 119.99742 * 3 2 1 32 32 H 1.09002 * 110.70429 * 336.69026 * 6 4 2 33 33 H 1.08992 * 110.70614 * 99.92529 * 6 4 2 34 34 H 1.08994 * 110.99032 * 277.55849 * 7 6 4 35 35 H 1.09003 * 111.02288 * 153.75640 * 7 6 4 36 36 H 1.08997 * 110.36981 * 204.10145 * 8 7 6 37 37 H 1.08999 * 110.46221 * 81.80530 * 8 7 6 38 38 H 1.09006 * 110.48297 * 335.78208 * 12 10 9 39 39 H 1.09003 * 110.48955 * 98.42522 * 12 10 9 40 40 H 1.08998 * 110.75803 * 279.62678 * 13 12 10 41 41 H 1.09003 * 110.75403 * 156.25616 * 13 12 10 42 42 H 1.08992 * 110.48491 * 203.37630 * 14 13 12 43 43 H 1.08996 * 110.59852 * 80.78694 * 14 13 12 44 44 H 0.96998 * 119.99814 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.7978 -1.7823 1.1894 6 6 1.3999 -0.1034 2.5102 7 6 2.5630 -0.1210 3.5369 8 6 3.7849 0.1708 2.6304 9 7 3.4990 -0.5457 1.3692 10 6 4.0380 0.1854 0.2147 11 1 3.8607 1.2543 0.3339 12 6 3.3779 -0.3189 -1.0852 13 6 4.5219 -0.2884 -2.1289 14 6 5.7499 -0.7466 -1.3034 15 6 5.5461 -0.0865 0.0759 16 1 6.1007 0.8505 0.1270 17 6 6.0053 -1.0180 1.1679 18 1 5.2847 -1.4563 1.8423 19 6 7.3456 -1.3105 1.3061 20 7 8.2233 -0.7771 0.4846 21 14 7.9149 -2.4646 2.6601 22 1 6.7407 -2.9263 3.4432 23 1 8.5997 -3.6360 2.0567 24 1 8.8572 -1.7485 3.5572 25 1 -0.3634 0.5138 0.8900 26 1 -0.3635 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 2.6454 1.6138 -0.8900 30 1 1.1921 2.1276 0.0005 31 1 2.6454 1.6139 0.8900 32 1 1.0731 0.9181 2.3155 33 1 0.5683 -0.7153 2.8595 34 1 2.6520 -1.0991 4.0093 35 1 2.4360 0.6616 4.2850 36 1 4.6966 -0.2140 3.0872 37 1 3.8759 1.2413 2.4465 38 1 3.0071 -1.3357 -0.9552 39 1 2.5693 0.3474 -1.3859 40 1 4.6688 0.7216 -2.5116 41 1 4.3214 -0.9856 -2.9424 42 1 6.6724 -0.3924 -1.7634 43 1 5.7646 -1.8323 -1.2083 44 1 9.1661 -0.9832 0.5816 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259873860.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:00 Heat of formation + Delta-G solvation = 108.661140 kcal Electronic energy + Delta-G solvation = -20968.409328 eV Core-core repulsion = 18310.932836 eV Total energy + Delta-G solvation = -2657.476492 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.60064 -37.65589 -36.15133 -34.03604 -32.24429 -30.07708 -29.21768 -27.94534 -26.67255 -25.98103 -23.94111 -22.03948 -20.84195 -20.38779 -19.74224 -18.20954 -17.07281 -17.03387 -16.26685 -15.97227 -15.28872 -14.86798 -14.44465 -14.22335 -13.85677 -13.72437 -13.60438 -13.38246 -12.97275 -12.92511 -12.76022 -12.60388 -12.33064 -12.23414 -11.95293 -11.80272 -11.71908 -11.49671 -11.38137 -11.31173 -11.15448 -10.88555 -10.65654 -10.50048 -10.31253 -9.69434 -8.57378 -7.94846 -5.94142 1.39099 1.42190 1.53396 2.53406 3.36578 3.39509 3.83860 3.89482 3.99493 4.13591 4.22618 4.32376 4.36500 4.44016 4.46887 4.69786 4.75323 4.77987 4.87362 4.94805 4.98628 5.00855 5.04060 5.05684 5.09599 5.14455 5.19509 5.21267 5.29935 5.33082 5.39342 5.45621 5.50070 5.53160 5.62954 5.67492 5.70856 5.84149 6.03184 6.07920 6.50817 6.62726 6.87400 7.24280 7.70722 9.16328 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023536 B = 0.009218 C = 0.007219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.385896 B = 3036.839698 C = 3877.529295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.182 4.182 3 C -0.164 4.164 4 C 0.073 3.927 5 H 0.066 0.934 6 C -0.124 4.124 7 C -0.128 4.128 8 C 0.050 3.950 9 N -0.512 5.512 10 C 0.075 3.925 11 H 0.061 0.939 12 C -0.137 4.137 13 C -0.134 4.134 14 C -0.088 4.088 15 C 0.040 3.960 16 H -0.019 1.019 17 C -0.477 4.477 18 H 0.090 0.910 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.939 3.061 22 H -0.265 1.265 23 H -0.292 1.292 24 H -0.290 1.290 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.151 0.849 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.056 0.944 37 H 0.028 0.972 38 H 0.068 0.932 39 H 0.140 0.860 40 H 0.062 0.938 41 H 0.066 0.934 42 H 0.015 0.985 43 H 0.024 0.976 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.945 3.030 -0.200 17.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.199 4.199 3 C -0.220 4.220 4 C -0.035 4.035 5 H 0.084 0.916 6 C -0.162 4.162 7 C -0.166 4.166 8 C -0.078 4.078 9 N -0.236 5.236 10 C -0.033 4.033 11 H 0.078 0.922 12 C -0.173 4.173 13 C -0.172 4.172 14 C -0.127 4.127 15 C 0.021 3.979 16 H -0.001 1.001 17 C -0.516 4.516 18 H 0.108 0.892 19 C -0.203 4.203 20 N -0.582 5.582 21 Si 0.767 3.233 22 H -0.189 1.189 23 H -0.219 1.219 24 H -0.217 1.217 25 H 0.070 0.930 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.167 0.833 29 H 0.091 0.909 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.047 0.953 38 H 0.086 0.914 39 H 0.157 0.843 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.034 0.966 43 H 0.043 0.957 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -16.524 2.536 -0.194 16.719 hybrid contribution 1.212 0.075 0.828 1.470 sum -15.312 2.611 0.634 15.546 Atomic orbital electron populations 1.21868 0.94163 1.01656 1.01743 1.23694 0.96891 0.96771 1.02544 1.22848 1.00532 0.96470 1.02196 1.22559 0.87018 0.98981 0.94938 0.91551 1.22811 0.97498 1.01365 0.94500 1.22726 0.94361 1.01900 0.97595 1.22956 0.98567 0.95257 0.90985 1.63670 1.10501 1.47804 1.01576 1.23032 0.94754 0.95839 0.89677 0.92165 1.24191 0.97268 1.02094 0.93729 1.22768 0.96178 1.00403 0.97834 1.22088 0.95553 0.97981 0.97078 1.19337 0.91375 0.93814 0.93393 1.00055 1.22027 0.91490 1.24474 1.13606 0.89184 1.25790 0.97918 0.98331 0.98230 1.70151 1.01333 1.46946 1.39805 0.85786 0.78098 0.79160 0.80268 1.18894 1.21888 1.21689 0.92960 0.92025 0.92703 0.83302 0.90851 0.92603 0.93159 0.90827 0.90131 0.91605 0.90068 0.92552 0.95345 0.91390 0.84282 0.91937 0.91547 0.96557 0.95719 0.94268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 8.54 71.98 0.61 -1.89 16 2 C -0.18 -4.28 1.82 -10.79 -0.02 -4.30 16 3 C -0.16 -4.01 6.49 71.98 0.47 -3.54 16 4 C 0.07 2.09 2.74 45.26 0.12 2.22 16 5 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 6 C -0.12 -3.00 4.94 31.78 0.16 -2.84 16 7 C -0.13 -3.57 7.08 31.98 0.23 -3.35 16 8 C 0.05 1.84 5.23 86.78 0.45 2.30 16 9 N -0.51 -19.12 3.34 -831.32 -2.77 -21.90 16 10 C 0.07 2.89 1.71 45.64 0.08 2.97 16 11 H 0.06 2.27 4.05 -2.39 -0.01 2.26 16 12 C -0.14 -4.37 3.20 31.67 0.10 -4.27 16 13 C -0.13 -4.77 6.91 31.89 0.22 -4.55 16 14 C -0.09 -4.29 5.75 31.67 0.18 -4.11 16 15 C 0.04 2.01 2.68 -10.82 -0.03 1.98 16 16 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 17 C -0.48 -26.43 6.82 25.60 0.17 -26.26 16 18 H 0.09 4.92 4.81 -2.91 -0.01 4.90 16 19 C -0.01 -0.46 5.36 84.66 0.45 -0.01 16 20 N -0.94 -58.06 12.83 21.45 0.28 -57.78 16 21 Si 0.94 46.51 29.54 68.60 2.03 48.54 16 22 H -0.26 -12.60 7.11 99.48 0.71 -11.89 16 23 H -0.29 -14.48 7.11 99.48 0.71 -13.78 16 24 H -0.29 -14.25 7.11 99.48 0.71 -13.55 16 25 H 0.05 0.92 6.65 -2.38 -0.02 0.91 16 26 H 0.06 0.98 8.14 -2.39 -0.02 0.97 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.15 3.63 3.05 -64.94 -0.20 3.43 16 29 H 0.07 1.82 5.21 -2.39 -0.01 1.81 16 30 H 0.06 1.15 7.59 -2.39 -0.02 1.13 16 31 H 0.05 1.46 3.61 -2.39 -0.01 1.45 16 32 H 0.07 1.67 6.31 -2.39 -0.02 1.66 16 33 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.06 2.45 6.48 -2.39 -0.02 2.43 16 37 H 0.03 1.05 6.74 -2.39 -0.02 1.03 16 38 H 0.07 2.23 6.52 -2.38 -0.02 2.21 16 39 H 0.14 3.50 3.16 -6.48 -0.02 3.48 16 40 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.02 1.27 7.85 -2.39 -0.02 1.26 16 44 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -64.32 298.06 3.51 -60.81 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.78 Total: 15.98 kcal Atomic # 6 Polarization: -48.85 SS G_CDS: 3.21 Total: -45.64 kcal Atomic # 7 Polarization: -77.18 SS G_CDS: -2.50 Total: -79.68 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -64.32 3.51 -60.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259873860.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.469 kcal (2) G-P(sol) polarization free energy of solvation -64.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds