Wall clock time and date at job start Mon Mar 30 2020 05:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47036 * 2 1 4 4 C 1.53004 * 109.46933 * 119.99416 * 2 1 3 5 5 H 1.08999 * 110.72447 * 58.47740 * 4 2 1 6 6 C 1.54940 * 110.66460 * 295.38285 * 4 2 1 7 7 C 1.54603 * 102.91894 * 204.14918 * 6 4 2 8 8 C 1.53994 * 105.13746 * 21.95809 * 7 6 4 9 9 N 1.47902 * 107.06080 * 1.22351 * 8 7 6 10 10 C 1.46895 * 111.00114 * 214.15443 * 9 8 7 11 11 H 1.08998 * 110.54337 * 184.79152 * 10 9 8 12 12 C 1.54894 * 110.48681 * 62.18015 * 10 9 8 13 13 C 1.54890 * 102.75129 * 203.37777 * 12 10 9 14 14 C 1.54268 * 104.19345 * 37.94068 * 13 12 10 15 15 C 1.53868 * 106.60131 * 336.39173 * 14 13 12 16 16 H 1.09000 * 110.03601 * 119.27907 * 15 14 13 17 17 C 1.50699 * 110.07585 * 240.69242 * 15 14 13 18 18 H 1.07998 * 120.00217 * 117.87703 * 17 15 14 19 19 C 1.37882 * 119.99783 * 297.88251 * 17 15 14 20 20 N 1.31517 * 119.99854 * 179.97438 * 19 17 15 21 21 Si 1.86799 * 119.99981 * 359.97438 * 19 17 15 22 22 H 1.48499 * 109.46942 * 89.99943 * 21 19 17 23 23 H 1.48500 * 109.47202 * 210.00185 * 21 19 17 24 24 H 1.48501 * 109.47176 * 330.00729 * 21 19 17 25 25 H 1.08993 * 109.47719 * 300.00518 * 1 2 3 26 26 H 1.09008 * 109.46855 * 60.00398 * 1 2 3 27 27 H 1.09003 * 109.46896 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47719 * 239.99482 * 2 1 3 29 29 H 1.08999 * 109.47073 * 173.61316 * 3 2 1 30 30 H 1.09001 * 109.46338 * 293.60765 * 3 2 1 31 31 H 1.09001 * 109.47231 * 53.60671 * 3 2 1 32 32 H 1.09000 * 110.72665 * 85.79451 * 6 4 2 33 33 H 1.08993 * 110.88023 * 322.57610 * 6 4 2 34 34 H 1.09002 * 110.30932 * 263.04296 * 7 6 4 35 35 H 1.08998 * 110.39248 * 140.91507 * 7 6 4 36 36 H 1.09002 * 109.91719 * 241.86975 * 8 7 6 37 37 H 1.09001 * 110.08192 * 120.67010 * 8 7 6 38 38 H 1.09003 * 110.75449 * 321.69396 * 12 10 9 39 39 H 1.09004 * 110.75523 * 85.06371 * 12 10 9 40 40 H 1.08995 * 110.48647 * 156.61705 * 13 12 10 41 41 H 1.08996 * 110.48664 * 279.26753 * 13 12 10 42 42 H 1.08999 * 110.03218 * 217.10638 * 14 13 12 43 43 H 1.09003 * 110.02652 * 95.67418 * 14 13 12 44 44 H 0.96997 * 119.99301 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6660 -1.7444 1.2837 6 6 1.6363 0.0519 2.5300 7 6 2.6963 -0.4053 3.5583 8 6 3.8860 -0.9016 2.7159 9 7 3.5244 -0.7037 1.2955 10 6 4.0898 -1.7677 0.4552 11 1 3.8909 -1.5696 -0.5980 12 6 3.5145 -3.1460 0.8656 13 6 4.5982 -4.1321 0.3634 14 6 5.9299 -3.4055 0.6438 15 6 5.6067 -1.9023 0.7021 16 1 5.8619 -1.5033 1.6838 17 6 6.3711 -1.1668 -0.3683 18 1 5.8391 -0.6408 -1.1471 19 6 7.7499 -1.1656 -0.3533 20 7 8.4170 -0.5242 -1.2877 21 14 8.6701 -2.0750 0.9942 22 1 8.9234 -3.4734 0.5635 23 1 9.9643 -1.3952 1.2553 24 1 7.8539 -2.0794 2.2348 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 3.1240 1.4447 0.1143 30 1 1.7730 1.9222 -0.9417 31 1 1.5862 1.9884 0.8272 32 1 0.6358 -0.2344 2.8542 33 1 1.6947 1.1283 2.3686 34 1 2.3031 -1.2158 4.1720 35 1 3.0009 0.4312 4.1873 36 1 4.0629 -1.9594 2.9102 37 1 4.7801 -0.3257 2.9552 38 1 3.4041 -3.2117 1.9480 39 1 2.5629 -3.3313 0.3673 40 1 4.5498 -5.0680 0.9200 41 1 4.4814 -4.3157 -0.7046 42 1 6.6397 -3.6038 -0.1593 43 1 6.3420 -3.7361 1.5972 44 1 9.3869 -0.5231 -1.2769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259873866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:05 Heat of formation + Delta-G solvation = -10.988481 kcal Electronic energy + Delta-G solvation = -20316.507453 eV Core-core repulsion = 17653.842563 eV Total energy + Delta-G solvation = -2662.664889 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76110 -36.77210 -34.15100 -32.36492 -30.91983 -28.91837 -27.49407 -26.86365 -26.04545 -23.56328 -22.31969 -21.36058 -20.10940 -18.55676 -17.91471 -16.48816 -16.00230 -15.47247 -14.95846 -14.26822 -14.02674 -13.66092 -13.43178 -13.17640 -12.81021 -12.43790 -12.42838 -12.21936 -11.95535 -11.61621 -11.22499 -11.12878 -11.02831 -10.92306 -10.74499 -10.61941 -10.47980 -10.31072 -10.17186 -9.99818 -9.98874 -9.85766 -9.55525 -9.30452 -8.82109 -8.45427 -7.60734 -5.96717 -3.92389 3.33336 3.42595 3.44195 4.44370 4.50138 4.88992 4.97761 5.19044 5.31181 5.34379 5.37716 5.45192 5.49372 5.52006 5.60917 5.71729 5.78363 5.85533 5.92452 6.02567 6.04542 6.12273 6.12861 6.16281 6.25112 6.28706 6.35407 6.43293 6.46302 6.46643 6.49599 6.56707 6.67314 6.71566 6.88091 6.90429 6.96789 7.19758 7.47269 7.63071 7.89217 7.91148 8.65634 9.09597 9.66587 11.16933 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.007456 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.315429 B = 3754.617436 C = 3941.770237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.080 4.080 3 C -0.140 4.140 4 C 0.066 3.934 5 H 0.050 0.950 6 C -0.121 4.121 7 C -0.131 4.131 8 C 0.035 3.965 9 N -0.491 5.491 10 C 0.092 3.908 11 H 0.086 0.914 12 C -0.160 4.160 13 C -0.113 4.113 14 C -0.135 4.135 15 C 0.017 3.983 16 H 0.036 0.964 17 C -0.493 4.493 18 H 0.074 0.926 19 C 0.067 3.933 20 N -0.905 5.905 21 Si 0.876 3.124 22 H -0.280 1.280 23 H -0.295 1.295 24 H -0.266 1.266 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.046 0.954 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.053 0.947 40 H 0.047 0.953 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.036 0.964 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.133 -1.742 6.985 15.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.099 4.099 3 C -0.197 4.197 4 C -0.043 4.043 5 H 0.068 0.932 6 C -0.158 4.158 7 C -0.170 4.170 8 C -0.093 4.093 9 N -0.213 5.213 10 C -0.017 4.017 11 H 0.104 0.896 12 C -0.199 4.199 13 C -0.151 4.151 14 C -0.174 4.174 15 C -0.002 4.002 16 H 0.054 0.946 17 C -0.531 4.531 18 H 0.092 0.908 19 C -0.133 4.133 20 N -0.545 5.545 21 Si 0.705 3.295 22 H -0.206 1.206 23 H -0.222 1.222 24 H -0.191 1.191 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.096 0.904 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.718 -1.188 6.721 15.322 hybrid contribution 0.432 -1.423 0.950 1.765 sum -13.285 -2.611 7.671 15.562 Atomic orbital electron populations 1.21842 0.95943 1.01058 1.01390 1.20914 0.94097 0.97294 0.97558 1.21785 1.03506 0.94645 0.99801 1.22796 0.89550 0.97319 0.94621 0.93202 1.22589 0.97457 1.01224 0.94571 1.22410 0.96211 1.00474 0.97874 1.22823 0.97926 0.99818 0.88730 1.64784 1.05744 1.44761 1.06028 1.22803 0.96012 0.85730 0.97136 0.89579 1.23180 0.97931 0.98677 1.00088 1.22185 0.95784 0.96851 1.00298 1.22712 0.96517 0.98456 0.99681 1.19838 0.90821 0.91196 0.98345 0.94567 1.21046 0.90823 1.30991 1.10214 0.90808 1.24983 0.97681 0.95335 0.95308 1.69909 1.07233 1.43471 1.33840 0.86973 0.79098 0.79877 0.83590 1.20569 1.22192 1.19114 0.92866 0.92916 0.93316 0.91306 0.90254 0.94015 0.93487 0.92117 0.90356 0.92391 0.91570 0.93539 0.90490 0.92119 0.92871 0.93406 0.91991 0.91345 0.94512 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.02 37.16 0.34 -1.28 16 2 C -0.08 -1.11 2.87 -90.62 -0.26 -1.37 16 3 C -0.14 -2.02 8.58 37.16 0.32 -1.70 16 4 C 0.07 0.96 1.94 -65.78 -0.13 0.83 16 5 H 0.05 0.73 6.21 -51.93 -0.32 0.41 16 6 C -0.12 -1.53 5.47 -24.86 -0.14 -1.67 16 7 C -0.13 -1.73 6.93 -25.37 -0.18 -1.91 16 8 C 0.03 0.58 4.92 -2.75 -0.01 0.57 16 9 N -0.49 -8.74 4.23 -212.76 -0.90 -9.64 16 10 C 0.09 1.81 2.55 -66.05 -0.17 1.64 16 11 H 0.09 1.85 7.23 -51.93 -0.38 1.47 16 12 C -0.16 -2.70 4.78 -24.74 -0.12 -2.82 16 13 C -0.11 -2.01 6.83 -25.07 -0.17 -2.18 16 14 C -0.14 -2.91 4.48 -25.62 -0.11 -3.02 16 15 C 0.02 0.39 1.77 -90.66 -0.16 0.23 16 16 H 0.04 0.88 5.10 -51.93 -0.26 0.61 16 17 C -0.49 -13.77 8.91 -34.44 -0.31 -14.08 16 18 H 0.07 2.26 7.79 -52.49 -0.41 1.85 16 19 C 0.07 1.95 5.33 -17.82 -0.09 1.85 16 20 N -0.91 -28.01 13.96 55.43 0.77 -27.24 16 21 Si 0.88 22.06 24.65 -169.99 -4.19 17.86 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 24 H -0.27 -6.44 6.45 56.52 0.36 -6.08 16 25 H 0.05 0.55 7.35 -51.93 -0.38 0.17 16 26 H 0.05 0.55 8.14 -51.92 -0.42 0.13 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 1.06 7.66 -51.93 -0.40 0.66 16 29 H 0.08 1.38 7.42 -51.93 -0.39 1.00 16 30 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.61 6.38 -51.93 -0.33 0.27 16 32 H 0.06 0.67 8.03 -51.93 -0.42 0.25 16 33 H 0.08 1.00 5.81 -51.93 -0.30 0.70 16 34 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.79 5.55 -51.93 -0.29 0.50 16 37 H 0.08 1.39 7.64 -51.93 -0.40 1.00 16 38 H 0.06 0.99 6.00 -51.93 -0.31 0.68 16 39 H 0.05 0.82 7.55 -51.93 -0.39 0.43 16 40 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.07 1.60 6.48 -51.93 -0.34 1.26 16 43 H 0.04 0.76 7.43 -51.93 -0.39 0.37 16 44 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 312.85 15.07 4.71 4.71 Total: -1.00 -29.28 312.85 -8.63 -37.91 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -7.83 Total: 1.29 kcal Atomic # 6 Polarization: -23.71 SS G_CDS: -1.19 Total: -24.90 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: -0.13 Total: -36.87 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -4.19 Total: 17.86 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.28 -8.63 -37.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259873866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.920 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds