Wall clock time and date at job start Mon Mar 30 2020 05:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.47036 * 2 1 4 4 C 1.53004 * 109.46933 * 119.99416 * 2 1 3 5 5 H 1.08999 * 110.72447 * 58.47740 * 4 2 1 6 6 C 1.54940 * 110.66460 * 295.38285 * 4 2 1 7 7 C 1.54603 * 102.91894 * 204.14918 * 6 4 2 8 8 C 1.53994 * 105.13746 * 21.95809 * 7 6 4 9 9 N 1.47902 * 107.06080 * 1.22351 * 8 7 6 10 10 C 1.46895 * 111.00114 * 214.15443 * 9 8 7 11 11 H 1.08998 * 110.54337 * 184.79152 * 10 9 8 12 12 C 1.54894 * 110.48681 * 62.18015 * 10 9 8 13 13 C 1.54890 * 102.75129 * 203.37777 * 12 10 9 14 14 C 1.54268 * 104.19345 * 37.94068 * 13 12 10 15 15 C 1.53868 * 106.60131 * 336.39173 * 14 13 12 16 16 H 1.09000 * 110.03601 * 119.27907 * 15 14 13 17 17 C 1.50699 * 110.07585 * 240.69242 * 15 14 13 18 18 H 1.07998 * 120.00217 * 117.87703 * 17 15 14 19 19 C 1.37882 * 119.99783 * 297.88251 * 17 15 14 20 20 N 1.31517 * 119.99854 * 179.97438 * 19 17 15 21 21 Si 1.86799 * 119.99981 * 359.97438 * 19 17 15 22 22 H 1.48499 * 109.46942 * 89.99943 * 21 19 17 23 23 H 1.48500 * 109.47202 * 210.00185 * 21 19 17 24 24 H 1.48501 * 109.47176 * 330.00729 * 21 19 17 25 25 H 1.08993 * 109.47719 * 300.00518 * 1 2 3 26 26 H 1.09008 * 109.46855 * 60.00398 * 1 2 3 27 27 H 1.09003 * 109.46896 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47719 * 239.99482 * 2 1 3 29 29 H 1.08999 * 109.47073 * 173.61316 * 3 2 1 30 30 H 1.09001 * 109.46338 * 293.60765 * 3 2 1 31 31 H 1.09001 * 109.47231 * 53.60671 * 3 2 1 32 32 H 1.09000 * 110.72665 * 85.79451 * 6 4 2 33 33 H 1.08993 * 110.88023 * 322.57610 * 6 4 2 34 34 H 1.09002 * 110.30932 * 263.04296 * 7 6 4 35 35 H 1.08998 * 110.39248 * 140.91507 * 7 6 4 36 36 H 1.09002 * 109.91719 * 241.86975 * 8 7 6 37 37 H 1.09001 * 110.08192 * 120.67010 * 8 7 6 38 38 H 1.09003 * 110.75449 * 321.69396 * 12 10 9 39 39 H 1.09004 * 110.75523 * 85.06371 * 12 10 9 40 40 H 1.08995 * 110.48647 * 156.61705 * 13 12 10 41 41 H 1.08996 * 110.48664 * 279.26753 * 13 12 10 42 42 H 1.08999 * 110.03218 * 217.10638 * 14 13 12 43 43 H 1.09003 * 110.02652 * 95.67418 * 14 13 12 44 44 H 0.96997 * 119.99301 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2494 5 1 1.6660 -1.7444 1.2837 6 6 1.6363 0.0519 2.5300 7 6 2.6963 -0.4053 3.5583 8 6 3.8860 -0.9016 2.7159 9 7 3.5244 -0.7037 1.2955 10 6 4.0898 -1.7677 0.4552 11 1 3.8909 -1.5696 -0.5980 12 6 3.5145 -3.1460 0.8656 13 6 4.5982 -4.1321 0.3634 14 6 5.9299 -3.4055 0.6438 15 6 5.6067 -1.9023 0.7021 16 1 5.8619 -1.5033 1.6838 17 6 6.3711 -1.1668 -0.3683 18 1 5.8391 -0.6408 -1.1471 19 6 7.7499 -1.1656 -0.3533 20 7 8.4170 -0.5242 -1.2877 21 14 8.6701 -2.0750 0.9942 22 1 8.9234 -3.4734 0.5635 23 1 9.9643 -1.3952 1.2553 24 1 7.8539 -2.0794 2.2348 25 1 -0.3634 0.5139 0.8898 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 3.1240 1.4447 0.1143 30 1 1.7730 1.9222 -0.9417 31 1 1.5862 1.9884 0.8272 32 1 0.6358 -0.2344 2.8542 33 1 1.6947 1.1283 2.3686 34 1 2.3031 -1.2158 4.1720 35 1 3.0009 0.4312 4.1873 36 1 4.0629 -1.9594 2.9102 37 1 4.7801 -0.3257 2.9552 38 1 3.4041 -3.2117 1.9480 39 1 2.5629 -3.3313 0.3673 40 1 4.5498 -5.0680 0.9200 41 1 4.4814 -4.3157 -0.7046 42 1 6.6397 -3.6038 -0.1593 43 1 6.3420 -3.7361 1.5972 44 1 9.3869 -0.5231 -1.2769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259873866.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:04 Heat of formation + Delta-G solvation = -28.740902 kcal Electronic energy + Delta-G solvation = -20317.277256 eV Core-core repulsion = 17653.842563 eV Total energy + Delta-G solvation = -2663.434692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.10367 -38.22498 -35.34190 -34.49708 -32.22249 -30.75401 -28.66722 -27.95317 -27.51772 -25.47663 -23.55218 -22.62048 -21.62529 -20.02261 -19.33264 -18.44644 -17.42710 -16.86390 -16.58498 -15.63976 -15.42443 -15.08408 -14.83561 -14.61694 -14.25546 -14.14948 -13.92248 -13.53296 -13.07485 -12.95455 -12.82144 -12.47113 -12.35475 -12.26936 -12.13713 -11.99866 -11.88487 -11.73068 -11.68104 -11.57855 -11.44028 -11.20178 -11.05792 -10.96478 -10.80767 -10.67896 -8.93985 -8.24576 -6.24262 1.30508 1.33653 1.43498 2.35573 3.06057 3.23048 3.75090 3.79569 3.94699 4.01056 4.11850 4.20447 4.25919 4.33014 4.43809 4.57326 4.63389 4.66026 4.70075 4.72657 4.86927 4.91123 4.91883 4.93503 5.03378 5.04694 5.06882 5.10188 5.14613 5.21390 5.24348 5.30610 5.36614 5.39291 5.45050 5.52668 5.59525 5.63760 5.70968 5.80835 6.31190 6.39535 6.46676 6.81153 7.38143 8.93020 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.023981 B = 0.007456 C = 0.007102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.315429 B = 3754.617436 C = 3941.770237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C -0.135 4.135 4 C 0.066 3.934 5 H 0.058 0.942 6 C -0.114 4.114 7 C -0.123 4.123 8 C 0.031 3.969 9 N -0.516 5.516 10 C 0.097 3.903 11 H 0.054 0.946 12 C -0.145 4.145 13 C -0.108 4.108 14 C -0.137 4.137 15 C 0.015 3.985 16 H 0.029 0.971 17 C -0.493 4.493 18 H 0.025 0.975 19 C 0.007 3.993 20 N -0.956 5.956 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.297 1.297 24 H -0.248 1.248 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.042 0.958 29 H 0.038 0.962 30 H 0.045 0.955 31 H 0.066 0.934 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.042 0.958 43 H 0.050 0.950 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.609 -3.418 9.637 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.100 4.100 3 C -0.192 4.192 4 C -0.042 4.042 5 H 0.076 0.924 6 C -0.151 4.151 7 C -0.161 4.161 8 C -0.096 4.096 9 N -0.238 5.238 10 C -0.012 4.012 11 H 0.072 0.928 12 C -0.183 4.183 13 C -0.146 4.146 14 C -0.176 4.176 15 C -0.004 4.004 16 H 0.047 0.953 17 C -0.531 4.531 18 H 0.043 0.957 19 C -0.188 4.188 20 N -0.598 5.598 21 Si 0.766 3.234 22 H -0.191 1.191 23 H -0.224 1.224 24 H -0.172 1.172 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.084 0.916 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.223 -2.872 9.381 18.959 hybrid contribution 1.189 -0.790 0.020 1.428 sum -15.034 -3.662 9.401 18.105 Atomic orbital electron populations 1.21765 0.93084 1.02060 1.02453 1.20930 0.96382 0.96263 0.96457 1.21712 1.00932 0.95758 1.00823 1.22891 0.87251 0.98187 0.95885 0.92400 1.22586 0.98755 1.00728 0.93069 1.22381 0.94667 1.01478 0.97612 1.22826 0.98703 0.99524 0.88584 1.64676 1.08211 1.44346 1.06611 1.22472 0.94099 0.88486 0.96111 0.92763 1.23063 0.98337 0.95828 1.01118 1.22176 0.93553 0.97959 1.00886 1.22591 0.98302 0.97232 0.99428 1.19783 0.92845 0.91988 0.95739 0.95300 1.21326 0.91183 1.30397 1.10181 0.95652 1.25850 0.98735 0.96421 0.97833 1.70076 1.07550 1.45823 1.36373 0.85919 0.77502 0.78939 0.81047 1.19081 1.22366 1.17156 0.91303 0.92391 0.92327 0.93903 0.94263 0.93636 0.91560 0.89153 0.90690 0.90133 0.90784 0.93521 0.93162 0.90585 0.90780 0.90145 0.92190 0.93895 0.93169 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.02 71.98 0.65 -2.00 16 2 C -0.08 -2.19 2.87 -10.79 -0.03 -2.23 16 3 C -0.13 -3.90 8.58 71.98 0.62 -3.28 16 4 C 0.07 1.78 1.94 45.26 0.09 1.87 16 5 H 0.06 1.50 6.21 -2.39 -0.01 1.49 16 6 C -0.11 -2.49 5.47 31.80 0.17 -2.32 16 7 C -0.12 -2.85 6.93 31.48 0.22 -2.63 16 8 C 0.03 1.00 4.92 86.45 0.43 1.43 16 9 N -0.52 -18.30 4.23 -827.04 -3.50 -21.80 16 10 C 0.10 3.87 2.55 45.99 0.12 3.99 16 11 H 0.05 2.47 7.23 -2.39 -0.02 2.45 16 12 C -0.14 -4.51 4.78 31.89 0.15 -4.36 16 13 C -0.11 -3.56 6.83 31.67 0.22 -3.34 16 14 C -0.14 -5.74 4.48 31.32 0.14 -5.60 16 15 C 0.02 0.73 1.77 -10.82 -0.02 0.71 16 16 H 0.03 1.41 5.10 -2.39 -0.01 1.39 16 17 C -0.49 -29.08 8.91 25.60 0.23 -28.85 16 18 H 0.03 1.68 7.79 -2.91 -0.02 1.66 16 19 C 0.01 0.42 5.33 84.66 0.45 0.88 16 20 N -0.96 -62.15 13.96 21.45 0.30 -61.85 16 21 Si 0.94 46.30 24.65 68.60 1.69 47.99 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 24 H -0.25 -11.34 6.45 99.48 0.64 -10.70 16 25 H 0.07 1.14 7.35 -2.39 -0.02 1.13 16 26 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.04 1.36 7.66 -2.39 -0.02 1.34 16 29 H 0.04 1.43 7.42 -2.39 -0.02 1.41 16 30 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.62 6.38 -2.39 -0.02 1.61 16 32 H 0.09 1.51 8.03 -2.39 -0.02 1.49 16 33 H 0.07 1.70 5.81 -2.39 -0.01 1.69 16 34 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 36 H 0.05 1.47 5.55 -2.39 -0.01 1.45 16 37 H 0.05 1.83 7.64 -2.39 -0.02 1.81 16 38 H 0.08 2.18 6.00 -2.39 -0.01 2.17 16 39 H 0.07 2.04 7.55 -2.39 -0.02 2.02 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.98 16 42 H 0.04 1.99 6.48 -2.39 -0.02 1.98 16 43 H 0.05 1.95 7.43 -2.39 -0.02 1.93 16 44 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 Total: -1.00 -67.74 312.85 2.80 -64.94 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 0.88 Total: 16.46 kcal Atomic # 6 Polarization: -49.16 SS G_CDS: 3.43 Total: -45.74 kcal Atomic # 7 Polarization: -80.45 SS G_CDS: -3.20 Total: -83.65 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 1.69 Total: 47.99 kcal Total: -67.74 2.80 -64.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259873866.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.202 kcal (2) G-P(sol) polarization free energy of solvation -67.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds