Wall clock time and date at job start Mon Mar 30 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47061 * 2 1 4 4 C 1.53001 * 109.47441 * 120.00470 * 2 1 3 5 5 H 1.09001 * 110.72421 * 60.10485 * 4 2 1 6 6 C 1.54942 * 110.66290 * 297.01450 * 4 2 1 7 7 C 1.54596 * 102.91663 * 204.15423 * 6 4 2 8 8 C 1.53987 * 105.14420 * 21.95553 * 7 6 4 9 9 N 1.47898 * 107.05942 * 1.22624 * 8 7 6 10 10 C 1.46899 * 111.00389 * 214.16071 * 9 8 7 11 11 H 1.09007 * 110.01708 * 179.57138 * 10 9 8 12 12 C 1.54269 * 110.02730 * 301.00656 * 10 9 8 13 13 C 1.54890 * 104.19235 * 142.89630 * 12 10 9 14 14 C 1.54888 * 102.74914 * 322.05800 * 13 12 10 15 15 C 1.53870 * 110.03637 * 58.17181 * 10 9 8 16 16 H 1.09000 * 110.02853 * 0.05639 * 15 10 9 17 17 C 1.50699 * 110.02973 * 121.43356 * 15 10 9 18 18 H 1.07998 * 120.00392 * 0.02562 * 17 15 10 19 19 C 1.37878 * 119.99727 * 180.27771 * 17 15 10 20 20 N 1.31511 * 120.00187 * 359.72565 * 19 17 15 21 21 Si 1.86804 * 119.99817 * 179.72349 * 19 17 15 22 22 H 1.48503 * 109.46847 * 60.00379 * 21 19 17 23 23 H 1.48504 * 109.46952 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47186 * 300.00137 * 21 19 17 25 25 H 1.09004 * 109.47793 * 59.99812 * 1 2 3 26 26 H 1.09005 * 109.47089 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47346 * 299.99468 * 1 2 3 28 28 H 1.09005 * 109.46608 * 240.00443 * 2 1 3 29 29 H 1.09002 * 109.47072 * 181.95540 * 3 2 1 30 30 H 1.09002 * 109.46947 * 301.95817 * 3 2 1 31 31 H 1.09000 * 109.47062 * 61.95696 * 3 2 1 32 32 H 1.08991 * 110.72303 * 85.79231 * 6 4 2 33 33 H 1.09000 * 110.72302 * 322.50422 * 6 4 2 34 34 H 1.09010 * 110.30531 * 263.03833 * 7 6 4 35 35 H 1.08996 * 110.30771 * 140.87753 * 7 6 4 36 36 H 1.09002 * 109.91737 * 241.87414 * 8 7 6 37 37 H 1.08996 * 110.08549 * 120.67411 * 8 7 6 38 38 H 1.09001 * 110.48657 * 261.57384 * 12 10 9 39 39 H 1.08998 * 110.48738 * 24.21831 * 12 10 9 40 40 H 1.09000 * 110.75702 * 80.37401 * 13 12 10 41 41 H 1.09004 * 110.75463 * 203.56181 * 13 12 10 42 42 H 1.08997 * 110.48614 * 279.26516 * 14 13 12 43 43 H 1.08995 * 110.48449 * 156.62149 * 14 13 12 44 44 H 0.97000 * 119.99737 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6896 -1.7533 1.2688 6 6 1.6015 0.0296 2.5315 7 6 2.6582 -0.4129 3.5696 8 6 3.8703 -0.8731 2.7387 9 7 3.5230 -0.6698 1.3155 10 6 4.1241 -1.7122 0.4728 11 1 3.8520 -1.5515 -0.5705 12 6 5.6589 -1.6973 0.6280 13 6 6.0604 -3.1923 0.5755 14 6 4.9118 -3.8822 1.3525 15 6 3.6492 -3.1014 0.9334 16 1 2.9719 -3.0021 1.7817 17 6 2.9554 -3.8118 -0.2001 18 1 2.8574 -3.3286 -1.1610 19 6 2.4411 -5.0768 -0.0090 20 7 2.5608 -5.6655 1.1609 21 14 1.5743 -5.9543 -1.4119 22 1 2.5144 -6.1174 -2.5498 23 1 1.1173 -7.2906 -0.9527 24 1 0.4029 -5.1530 -1.8485 25 1 -0.3635 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8901 28 1 1.8932 -0.5138 -0.8901 29 1 3.1294 1.4427 -0.0351 30 1 1.6482 1.9664 -0.8719 31 1 1.7055 1.9461 0.9070 32 1 0.6038 -0.2830 2.8394 33 1 1.6390 1.1082 2.3788 34 1 2.2759 -1.2383 4.1703 35 1 2.9343 0.4253 4.2092 36 1 4.0692 -1.9284 2.9252 37 1 4.7473 -0.2791 2.9954 38 1 6.1201 -1.1493 -0.1936 39 1 5.9412 -1.2598 1.5856 40 1 6.0972 -3.5465 -0.4547 41 1 7.0174 -3.3529 1.0720 42 1 5.0735 -3.7976 2.4271 43 1 4.8279 -4.9287 1.0596 44 1 2.1994 -6.5555 1.2951 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259873868.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:55:07 Heat of formation + Delta-G solvation = -31.742374 kcal Electronic energy + Delta-G solvation = -20547.415758 eV Core-core repulsion = 17883.850912 eV Total energy + Delta-G solvation = -2663.564846 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.08066 -38.02773 -35.29774 -34.42115 -32.09083 -29.98338 -28.57738 -27.89671 -27.63510 -25.71943 -23.48783 -22.50075 -21.32815 -20.10161 -19.13241 -18.44429 -17.26273 -16.77460 -16.39553 -15.70607 -15.44673 -15.23542 -14.73042 -14.32922 -14.02676 -13.78849 -13.59136 -13.40946 -13.06767 -12.92414 -12.82386 -12.48588 -12.45633 -12.22496 -12.06659 -11.93352 -11.85735 -11.69714 -11.57986 -11.48982 -11.32013 -11.22791 -11.07396 -10.89210 -10.78181 -10.41465 -8.97724 -8.10256 -6.20163 1.36561 1.36749 1.44049 2.40618 3.17423 3.26144 3.79804 3.88176 4.08993 4.16904 4.20991 4.31704 4.36219 4.39836 4.50657 4.67077 4.72915 4.79425 4.83646 4.93386 4.97104 4.99330 5.02612 5.05430 5.06245 5.10252 5.13566 5.18197 5.23703 5.27051 5.35637 5.41335 5.45764 5.47023 5.59420 5.63313 5.67012 5.72242 5.86956 5.95610 6.25204 6.35783 6.54519 6.91287 7.46113 8.95726 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.017608 B = 0.009525 C = 0.007630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.843054 B = 2938.928892 C = 3668.799090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.077 4.077 3 C -0.125 4.125 4 C 0.066 3.934 5 H 0.026 0.974 6 C -0.114 4.114 7 C -0.126 4.126 8 C 0.029 3.971 9 N -0.496 5.496 10 C 0.080 3.920 11 H 0.056 0.944 12 C -0.103 4.103 13 C -0.114 4.114 14 C -0.099 4.099 15 C 0.030 3.970 16 H 0.000 1.000 17 C -0.514 4.514 18 H 0.044 0.956 19 C 0.015 3.985 20 N -0.917 5.917 21 Si 0.940 3.060 22 H -0.272 1.272 23 H -0.286 1.286 24 H -0.273 1.273 25 H 0.066 0.934 26 H 0.032 0.968 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.028 0.972 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.051 0.949 41 H 0.069 0.931 42 H 0.022 0.978 43 H 0.038 0.962 44 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.436 12.627 1.581 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.096 4.096 3 C -0.182 4.182 4 C -0.043 4.043 5 H 0.044 0.956 6 C -0.152 4.152 7 C -0.164 4.164 8 C -0.099 4.099 9 N -0.219 5.219 10 C -0.029 4.029 11 H 0.074 0.926 12 C -0.141 4.141 13 C -0.152 4.152 14 C -0.138 4.138 15 C 0.011 3.989 16 H 0.018 0.982 17 C -0.552 4.552 18 H 0.062 0.938 19 C -0.183 4.183 20 N -0.557 5.557 21 Si 0.766 3.234 22 H -0.197 1.197 23 H -0.212 1.212 24 H -0.199 1.199 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.087 0.913 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.046 0.954 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.070 0.930 41 H 0.088 0.912 42 H 0.041 0.959 43 H 0.057 0.943 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 0.599 12.969 1.474 13.066 hybrid contribution -0.863 -2.297 -0.431 2.491 sum -0.263 10.672 1.043 10.726 Atomic orbital electron populations 1.21781 0.94600 1.00817 1.02571 1.20857 0.95573 0.97198 0.96002 1.21664 1.01281 0.93874 1.01378 1.22748 0.88325 0.97151 0.96039 0.95569 1.22593 0.97981 1.01304 0.93277 1.22364 0.95200 1.01034 0.97835 1.22860 0.98900 0.99246 0.88858 1.65001 1.07060 1.43815 1.05982 1.22507 0.94381 0.89822 0.96172 0.92607 1.22327 0.94104 0.95821 1.01824 1.22410 0.97527 0.95602 0.99667 1.22150 0.96161 0.99723 0.95755 1.19692 0.92762 0.92020 0.94436 0.98222 1.21470 1.35484 1.00670 0.97569 0.93778 1.25629 0.96972 0.98348 0.97389 1.70086 1.46965 1.14802 1.23855 0.85886 0.79285 0.77798 0.80388 1.19713 1.21190 1.19881 0.91544 0.94847 0.91254 0.94174 0.92739 0.92789 0.91674 0.91510 0.88731 0.93080 0.89029 0.95373 0.89776 0.91198 0.90930 0.92989 0.91245 0.95876 0.94276 0.93376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.00 71.98 0.65 -3.27 16 2 C -0.08 -2.47 2.86 -10.79 -0.03 -2.50 16 3 C -0.12 -3.24 8.72 71.98 0.63 -2.61 16 4 C 0.07 2.37 1.85 45.26 0.08 2.45 16 5 H 0.03 1.22 6.07 -2.39 -0.01 1.20 16 6 C -0.11 -3.26 5.41 31.80 0.17 -3.09 16 7 C -0.13 -3.64 6.93 31.47 0.22 -3.43 16 8 C 0.03 0.99 4.91 86.44 0.42 1.41 16 9 N -0.50 -17.87 4.26 -829.07 -3.53 -21.40 16 10 C 0.08 3.32 2.67 45.64 0.12 3.44 16 11 H 0.06 2.51 6.76 -2.38 -0.02 2.49 16 12 C -0.10 -3.68 6.29 31.67 0.20 -3.48 16 13 C -0.11 -4.45 6.91 31.89 0.22 -4.23 16 14 C -0.10 -4.78 5.63 31.67 0.18 -4.60 16 15 C 0.03 1.51 0.87 -10.82 -0.01 1.51 16 16 H 0.00 -0.01 5.38 -2.39 -0.01 -0.02 16 17 C -0.51 -28.41 8.43 25.60 0.22 -28.19 16 18 H 0.04 2.45 7.33 -2.91 -0.02 2.43 16 19 C 0.02 0.85 5.08 84.66 0.43 1.28 16 20 N -0.92 -54.14 11.98 21.45 0.26 -53.88 16 21 Si 0.94 44.60 29.54 68.60 2.03 46.63 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 25 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 27 H 0.07 1.67 7.29 -2.38 -0.02 1.65 16 28 H 0.04 1.50 7.56 -2.38 -0.02 1.48 16 29 H 0.05 1.54 7.64 -2.39 -0.02 1.52 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.49 5.98 -2.39 -0.01 1.47 16 32 H 0.07 1.84 8.03 -2.39 -0.02 1.82 16 33 H 0.09 2.31 5.71 -2.39 -0.01 2.30 16 34 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.03 1.12 5.25 -2.39 -0.01 1.11 16 37 H 0.08 2.48 7.64 -2.39 -0.02 2.46 16 38 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.07 2.40 6.41 -2.39 -0.02 2.38 16 40 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 42 H 0.02 1.08 7.58 -2.39 -0.02 1.06 16 43 H 0.04 2.14 6.55 -2.39 -0.02 2.12 16 44 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 Total: -1.00 -60.33 317.31 3.20 -57.13 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.95 Total: 16.85 kcal Atomic # 6 Polarization: -48.82 SS G_CDS: 3.50 Total: -45.32 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -3.28 Total: -75.29 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -60.33 3.20 -57.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259873868.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.386 kcal (2) G-P(sol) polarization free energy of solvation -60.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds