Wall clock time and date at job start Mon Mar 30 2020 07:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47275 * 2 1 4 4 H 1.08003 * 120.00084 * 2.89008 * 3 2 1 5 5 C 1.37875 * 120.00072 * 182.89003 * 3 2 1 6 6 N 1.31517 * 120.00208 * 352.78295 * 5 3 2 7 7 Si 1.86802 * 119.99900 * 172.78136 * 5 3 2 8 8 H 1.48502 * 109.47220 * 59.99968 * 7 5 3 9 9 H 1.48500 * 109.46960 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47438 * 299.99807 * 7 5 3 11 11 C 1.53001 * 109.47110 * 239.99976 * 2 1 3 12 12 C 1.54886 * 110.75688 * 61.32897 * 11 2 1 13 13 C 1.54468 * 104.10065 * 203.89591 * 12 11 2 14 14 C 1.53871 * 106.68548 * 23.33982 * 13 12 11 15 15 C 1.54266 * 106.59734 * 0.16024 * 14 13 12 16 16 N 1.46896 * 109.47286 * 119.99916 * 2 1 3 17 17 C 1.46843 * 111.00464 * 276.19325 * 16 2 1 18 18 C 1.53035 * 109.52944 * 185.83754 * 17 16 2 19 19 C 1.53118 * 109.27883 * 300.82286 * 18 17 16 20 20 C 1.53116 * 109.21346 * 57.61746 * 19 18 17 21 21 C 1.46844 * 111.00049 * 40.40480 * 16 2 1 22 22 H 1.09002 * 109.47112 * 300.00360 * 1 2 3 23 23 H 1.09000 * 109.47326 * 59.99989 * 1 2 3 24 24 H 1.09004 * 109.47175 * 180.02562 * 1 2 3 25 25 H 0.96994 * 120.00147 * 180.02562 * 6 5 3 26 26 H 1.09005 * 110.67150 * 184.56201 * 11 2 1 27 27 H 1.09006 * 110.48555 * 322.41776 * 12 11 2 28 28 H 1.08996 * 110.49129 * 85.06394 * 12 11 2 29 29 H 1.09002 * 109.85438 * 264.10046 * 13 12 11 30 30 H 1.09004 * 110.16167 * 142.75026 * 13 12 11 31 31 H 1.09003 * 110.03036 * 240.87461 * 14 13 12 32 32 H 1.08999 * 110.03108 * 119.44597 * 14 13 12 33 33 H 1.09004 * 110.48502 * 217.71019 * 15 14 13 34 34 H 1.08999 * 110.48834 * 95.07314 * 15 14 13 35 35 H 1.09005 * 109.46037 * 65.81967 * 17 16 2 36 36 H 1.09008 * 109.45123 * 305.85288 * 17 16 2 37 37 H 1.08998 * 109.50311 * 180.88056 * 18 17 16 38 38 H 1.09003 * 109.53242 * 60.77869 * 18 17 16 39 39 H 1.08994 * 109.52098 * 177.55772 * 19 18 17 40 40 H 1.09001 * 109.52165 * 297.68599 * 19 18 17 41 41 H 1.09006 * 109.50395 * 62.32066 * 20 19 18 42 42 H 1.08997 * 109.50571 * 182.43810 * 20 19 18 43 43 H 1.09000 * 109.46225 * 294.17756 * 21 16 2 44 44 H 1.09000 * 109.46686 * 54.15279 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 1.3316 2.2413 0.0472 5 6 3.3864 1.6732 -0.0602 6 7 4.2449 0.6805 0.0255 7 14 4.0018 3.4252 -0.2635 8 1 3.5335 4.2501 0.8791 9 1 5.4863 3.4272 -0.3006 10 1 3.4747 3.9910 -1.5313 11 6 2.0399 -0.7213 -1.2492 12 6 1.5678 0.0047 -2.5334 13 6 1.5976 -1.0937 -3.6191 14 6 1.4847 -2.4421 -2.8867 15 6 1.3860 -2.1191 -1.3814 16 7 2.0196 -0.6924 1.1994 17 6 2.0557 0.2151 2.3533 18 6 2.7046 -0.4957 3.5431 19 6 1.8976 -1.7518 3.8830 20 6 1.8331 -2.6582 2.6506 21 6 1.2109 -1.8841 1.4862 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 5.1975 0.8582 -0.0165 26 1 3.1267 -0.8035 -1.2294 27 1 0.5543 0.3853 -2.4057 28 1 2.2514 0.8148 -2.7870 29 1 2.5373 -1.0451 -4.1692 30 1 0.7580 -0.9688 -4.3030 31 1 2.3697 -3.0480 -3.0813 32 1 0.5900 -2.9714 -3.2144 33 1 1.9375 -2.8551 -0.7963 34 1 0.3432 -2.0838 -1.0664 35 1 1.0394 0.5090 2.6160 36 1 2.6361 1.1021 2.0994 37 1 2.7169 0.1729 4.4038 38 1 3.7257 -0.7777 3.2865 39 1 2.3807 -2.2845 4.7021 40 1 0.8879 -1.4671 4.1790 41 1 2.8400 -2.9752 2.3789 42 1 1.2233 -3.5335 2.8741 43 1 0.1986 -1.5804 1.7529 44 1 1.1777 -2.5218 0.6028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260517066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:34 Heat of formation + Delta-G solvation = -2.092371 kcal Electronic energy + Delta-G solvation = -20951.647301 eV Core-core repulsion = 18289.368176 eV Total energy + Delta-G solvation = -2662.279125 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -39.05543 -36.66233 -33.88463 -31.85073 -29.88203 -29.12305 -27.71428 -26.37649 -25.28529 -23.36769 -21.76622 -20.58692 -19.43432 -18.51373 -17.88391 -16.14695 -15.30840 -14.60008 -14.41567 -14.10568 -13.56832 -13.45570 -13.12783 -12.98740 -12.54112 -12.31204 -12.02053 -11.77516 -11.33951 -11.08481 -10.95406 -10.76416 -10.63854 -10.47276 -10.36640 -10.21850 -10.12386 -10.00234 -9.88558 -9.73144 -9.49883 -9.28512 -9.04467 -8.82487 -8.56999 -8.22364 -6.54289 -5.84421 -3.95840 3.33186 3.39305 3.42911 4.47146 5.13357 5.45949 5.52487 5.59017 5.61064 5.63831 5.68742 5.78940 6.16821 6.18151 6.31080 6.34527 6.35092 6.43997 6.45403 6.48578 6.52423 6.56968 6.60299 6.62202 6.69113 6.70686 6.79016 6.79991 6.82681 6.92745 6.97819 7.06623 7.11363 7.18517 7.31061 7.40916 7.51393 7.78238 7.88936 8.13585 8.32168 8.75713 8.94194 9.20000 9.66409 11.14061 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.014706 B = 0.013314 C = 0.008047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.540623 B = 2102.537404 C = 3478.532765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.246 3.754 3 C -0.524 4.524 4 H 0.051 0.949 5 C 0.084 3.916 6 N -0.839 5.839 7 Si 0.870 3.130 8 H -0.280 1.280 9 H -0.289 1.289 10 H -0.278 1.278 11 C -0.053 4.053 12 C -0.103 4.103 13 C -0.126 4.126 14 C -0.122 4.122 15 C -0.133 4.133 16 N -0.491 5.491 17 C 0.082 3.918 18 C -0.117 4.117 19 C -0.115 4.115 20 C -0.113 4.113 21 C 0.031 3.969 22 H 0.033 0.967 23 H 0.046 0.954 24 H 0.038 0.962 25 H 0.255 0.745 26 H 0.104 0.896 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.056 0.944 35 H -0.002 1.002 36 H 0.097 0.903 37 H 0.044 0.956 38 H 0.066 0.934 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.064 0.936 42 H 0.045 0.955 43 H 0.010 0.990 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.955 -4.927 0.454 6.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.159 3.841 3 C -0.563 4.563 4 H 0.069 0.931 5 C -0.122 4.122 6 N -0.474 5.474 7 Si 0.698 3.302 8 H -0.205 1.205 9 H -0.214 1.214 10 H -0.204 1.204 11 C -0.072 4.072 12 C -0.141 4.141 13 C -0.164 4.164 14 C -0.160 4.160 15 C -0.170 4.170 16 N -0.215 5.215 17 C -0.046 4.046 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.097 4.097 22 H 0.052 0.948 23 H 0.065 0.935 24 H 0.057 0.943 25 H 0.066 0.934 26 H 0.122 0.878 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.016 0.984 36 H 0.115 0.885 37 H 0.063 0.937 38 H 0.084 0.916 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.083 0.917 42 H 0.064 0.936 43 H 0.029 0.971 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.254 -5.146 0.362 6.099 hybrid contribution -0.516 1.235 0.080 1.341 sum -3.771 -3.911 0.442 5.451 Atomic orbital electron populations 1.22608 1.01553 0.98814 0.99934 1.18515 0.86435 0.92524 0.86633 1.20813 0.91549 0.90630 1.53273 0.93069 1.24864 0.97028 0.95589 0.94711 1.70088 1.01368 1.29658 1.46271 0.87037 0.77730 0.86708 0.78735 1.20526 1.21440 1.20418 1.21961 1.02354 0.89758 0.93122 1.22295 1.00519 0.96569 0.94730 1.22208 0.99859 0.96028 0.98257 1.22133 0.99752 0.96931 0.97161 1.22856 1.00234 1.00150 0.93800 1.62109 1.50429 1.05560 1.03379 1.21765 0.96751 0.97142 0.88934 1.21635 1.00292 0.95793 0.97744 1.21537 0.99398 0.97276 0.97097 1.21562 1.01116 0.96922 0.95536 1.22537 0.94105 0.95464 0.97605 0.94836 0.93485 0.94344 0.93435 0.87803 0.92844 0.92255 0.93053 0.93554 0.92995 0.93605 0.92288 0.92547 0.98437 0.88453 0.93720 0.91568 0.93595 0.93468 0.91736 0.93641 0.97150 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 6.68 37.15 0.25 -3.32 16 2 C 0.25 5.58 0.11 -132.76 -0.02 5.57 16 3 C -0.52 -13.16 5.54 -34.44 -0.19 -13.35 16 4 H 0.05 1.33 7.76 -52.48 -0.41 0.93 16 5 C 0.08 2.14 3.95 -17.82 -0.07 2.07 16 6 N -0.84 -21.96 10.88 55.43 0.60 -21.36 16 7 Si 0.87 20.23 29.54 -169.99 -5.02 15.21 16 8 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 C -0.05 -1.15 2.11 -88.63 -0.19 -1.33 16 12 C -0.10 -2.10 5.50 -24.97 -0.14 -2.24 16 13 C -0.13 -2.18 6.81 -25.51 -0.17 -2.36 16 14 C -0.12 -2.05 6.80 -25.62 -0.17 -2.22 16 15 C -0.13 -2.51 4.23 -25.07 -0.11 -2.61 16 16 N -0.49 -10.91 3.79 -220.36 -0.84 -11.75 16 17 C 0.08 1.82 4.68 -3.84 -0.02 1.80 16 18 C -0.12 -2.24 6.10 -26.65 -0.16 -2.40 16 19 C -0.12 -1.95 6.00 -26.61 -0.16 -2.11 16 20 C -0.11 -1.97 6.10 -26.65 -0.16 -2.13 16 21 C 0.03 0.61 4.05 -3.83 -0.02 0.59 16 22 H 0.03 0.71 7.49 -51.93 -0.39 0.32 16 23 H 0.05 0.96 6.21 -51.93 -0.32 0.64 16 24 H 0.04 0.74 4.45 -51.93 -0.23 0.51 16 25 H 0.26 6.59 8.31 -40.82 -0.34 6.25 16 26 H 0.10 2.63 6.36 -51.93 -0.33 2.30 16 27 H 0.05 1.08 5.96 -51.93 -0.31 0.77 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.06 1.12 6.74 -51.93 -0.35 0.77 16 34 H 0.06 1.04 5.15 -51.93 -0.27 0.77 16 35 H 0.00 -0.06 7.51 -51.93 -0.39 -0.45 16 36 H 0.10 2.43 5.45 -51.92 -0.28 2.15 16 37 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.01 0.21 6.67 -51.93 -0.35 -0.14 16 44 H 0.08 1.50 3.69 -51.93 -0.19 1.31 16 LS Contribution 305.52 15.07 4.60 4.60 Total: -1.00 -24.99 305.52 -9.58 -34.57 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -7.60 Total: 2.76 kcal Atomic # 6 Polarization: -22.71 SS G_CDS: -1.33 Total: -24.04 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: -0.23 Total: -33.10 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -24.99 -9.58 -34.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.477 kcal (2) G-P(sol) polarization free energy of solvation -24.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds