Wall clock time and date at job start Mon Mar 30 2020 07:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50699 * 109.47275 * 2 1 4 4 H 1.08003 * 120.00084 * 2.89008 * 3 2 1 5 5 C 1.37875 * 120.00072 * 182.89003 * 3 2 1 6 6 N 1.31517 * 120.00208 * 352.78295 * 5 3 2 7 7 Si 1.86802 * 119.99900 * 172.78136 * 5 3 2 8 8 H 1.48502 * 109.47220 * 59.99968 * 7 5 3 9 9 H 1.48500 * 109.46960 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47438 * 299.99807 * 7 5 3 11 11 C 1.53001 * 109.47110 * 239.99976 * 2 1 3 12 12 C 1.54886 * 110.75688 * 61.32897 * 11 2 1 13 13 C 1.54468 * 104.10065 * 203.89591 * 12 11 2 14 14 C 1.53871 * 106.68548 * 23.33982 * 13 12 11 15 15 C 1.54266 * 106.59734 * 0.16024 * 14 13 12 16 16 N 1.46896 * 109.47286 * 119.99916 * 2 1 3 17 17 C 1.46843 * 111.00464 * 276.19325 * 16 2 1 18 18 C 1.53035 * 109.52944 * 185.83754 * 17 16 2 19 19 C 1.53118 * 109.27883 * 300.82286 * 18 17 16 20 20 C 1.53116 * 109.21346 * 57.61746 * 19 18 17 21 21 C 1.46844 * 111.00049 * 40.40480 * 16 2 1 22 22 H 1.09002 * 109.47112 * 300.00360 * 1 2 3 23 23 H 1.09000 * 109.47326 * 59.99989 * 1 2 3 24 24 H 1.09004 * 109.47175 * 180.02562 * 1 2 3 25 25 H 0.96994 * 120.00147 * 180.02562 * 6 5 3 26 26 H 1.09005 * 110.67150 * 184.56201 * 11 2 1 27 27 H 1.09006 * 110.48555 * 322.41776 * 12 11 2 28 28 H 1.08996 * 110.49129 * 85.06394 * 12 11 2 29 29 H 1.09002 * 109.85438 * 264.10046 * 13 12 11 30 30 H 1.09004 * 110.16167 * 142.75026 * 13 12 11 31 31 H 1.09003 * 110.03036 * 240.87461 * 14 13 12 32 32 H 1.08999 * 110.03108 * 119.44597 * 14 13 12 33 33 H 1.09004 * 110.48502 * 217.71019 * 15 14 13 34 34 H 1.08999 * 110.48834 * 95.07314 * 15 14 13 35 35 H 1.09005 * 109.46037 * 65.81967 * 17 16 2 36 36 H 1.09008 * 109.45123 * 305.85288 * 17 16 2 37 37 H 1.08998 * 109.50311 * 180.88056 * 18 17 16 38 38 H 1.09003 * 109.53242 * 60.77869 * 18 17 16 39 39 H 1.08994 * 109.52098 * 177.55772 * 19 18 17 40 40 H 1.09001 * 109.52165 * 297.68599 * 19 18 17 41 41 H 1.09006 * 109.50395 * 62.32066 * 20 19 18 42 42 H 1.08997 * 109.50571 * 182.43810 * 20 19 18 43 43 H 1.09000 * 109.46225 * 294.17756 * 21 16 2 44 44 H 1.09000 * 109.46686 * 54.15279 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 1 1.3316 2.2413 0.0472 5 6 3.3864 1.6732 -0.0602 6 7 4.2449 0.6805 0.0255 7 14 4.0018 3.4252 -0.2635 8 1 3.5335 4.2501 0.8791 9 1 5.4863 3.4272 -0.3006 10 1 3.4747 3.9910 -1.5313 11 6 2.0399 -0.7213 -1.2492 12 6 1.5678 0.0047 -2.5334 13 6 1.5976 -1.0937 -3.6191 14 6 1.4847 -2.4421 -2.8867 15 6 1.3860 -2.1191 -1.3814 16 7 2.0196 -0.6924 1.1994 17 6 2.0557 0.2151 2.3533 18 6 2.7046 -0.4957 3.5431 19 6 1.8976 -1.7518 3.8830 20 6 1.8331 -2.6582 2.6506 21 6 1.2109 -1.8841 1.4862 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 0.0005 25 1 5.1975 0.8582 -0.0165 26 1 3.1267 -0.8035 -1.2294 27 1 0.5543 0.3853 -2.4057 28 1 2.2514 0.8148 -2.7870 29 1 2.5373 -1.0451 -4.1692 30 1 0.7580 -0.9688 -4.3030 31 1 2.3697 -3.0480 -3.0813 32 1 0.5900 -2.9714 -3.2144 33 1 1.9375 -2.8551 -0.7963 34 1 0.3432 -2.0838 -1.0664 35 1 1.0394 0.5090 2.6160 36 1 2.6361 1.1021 2.0994 37 1 2.7169 0.1729 4.4038 38 1 3.7257 -0.7777 3.2865 39 1 2.3807 -2.2845 4.7021 40 1 0.8879 -1.4671 4.1790 41 1 2.8400 -2.9752 2.3789 42 1 1.2233 -3.5335 2.8741 43 1 0.1986 -1.5804 1.7529 44 1 1.1777 -2.5218 0.6028 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260517066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:29 Heat of formation + Delta-G solvation = -13.849385 kcal Electronic energy + Delta-G solvation = -20952.157123 eV Core-core repulsion = 18289.368176 eV Total energy + Delta-G solvation = -2662.788947 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 4.51 seconds Orbital eigenvalues (eV) -40.71141 -38.19207 -35.53019 -33.69101 -31.47929 -30.74105 -29.23340 -27.99449 -27.15345 -25.00865 -23.36519 -22.18566 -20.87574 -20.07772 -19.66162 -17.98783 -16.89861 -16.47635 -15.98889 -15.71690 -15.26829 -14.91588 -14.76831 -14.54983 -14.10035 -13.87574 -13.62952 -13.50752 -12.97701 -12.83343 -12.55182 -12.51240 -12.40611 -12.27851 -11.86295 -11.81916 -11.69218 -11.55699 -11.48724 -11.33823 -10.98909 -10.87640 -10.77371 -10.43848 -10.38748 -10.14393 -8.26094 -7.82033 -5.96637 1.41520 1.45975 1.49376 2.51735 3.29327 3.75787 4.08666 4.13360 4.15848 4.20878 4.26323 4.31295 4.61077 4.65725 4.74530 4.82769 4.84191 4.88450 4.91153 4.98625 5.03813 5.05615 5.06918 5.11599 5.17179 5.20227 5.25614 5.30393 5.33534 5.40330 5.42666 5.45764 5.50695 5.62140 5.69718 5.71199 5.77098 5.88364 6.04470 6.31334 6.48349 6.84848 7.16567 7.41432 7.67399 9.13828 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.014706 B = 0.013314 C = 0.008047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1903.540623 B = 2102.537404 C = 3478.532765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.238 3.762 3 C -0.529 4.529 4 H 0.033 0.967 5 C 0.057 3.943 6 N -0.855 5.855 7 Si 0.911 3.089 8 H -0.281 1.281 9 H -0.289 1.289 10 H -0.280 1.280 11 C -0.053 4.053 12 C -0.103 4.103 13 C -0.121 4.121 14 C -0.117 4.117 15 C -0.125 4.125 16 N -0.505 5.505 17 C 0.087 3.913 18 C -0.112 4.112 19 C -0.109 4.109 20 C -0.110 4.110 21 C 0.030 3.970 22 H 0.021 0.979 23 H 0.046 0.954 24 H 0.056 0.944 25 H 0.250 0.750 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.031 0.969 29 H 0.051 0.949 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.063 0.937 35 H -0.011 1.011 36 H 0.061 0.939 37 H 0.059 0.941 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.010 0.990 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.122 -6.628 0.482 8.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.151 3.849 3 C -0.568 4.568 4 H 0.051 0.949 5 C -0.148 4.148 6 N -0.491 5.491 7 Si 0.739 3.261 8 H -0.207 1.207 9 H -0.215 1.215 10 H -0.206 1.206 11 C -0.072 4.072 12 C -0.141 4.141 13 C -0.158 4.158 14 C -0.155 4.155 15 C -0.162 4.162 16 N -0.229 5.229 17 C -0.042 4.042 18 C -0.150 4.150 19 C -0.147 4.147 20 C -0.148 4.148 21 C -0.098 4.098 22 H 0.040 0.960 23 H 0.065 0.935 24 H 0.075 0.925 25 H 0.060 0.940 26 H 0.084 0.916 27 H 0.072 0.928 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.007 0.993 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.094 0.906 43 H 0.028 0.972 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -4.426 -6.842 0.390 8.158 hybrid contribution -0.166 1.816 0.086 1.825 sum -4.592 -5.026 0.476 6.824 Atomic orbital electron populations 1.22484 1.00279 0.99738 0.99355 1.18561 0.87433 0.91414 0.87515 1.20960 0.91345 0.91763 1.52727 0.94883 1.25215 0.97237 0.97521 0.94810 1.70195 1.01008 1.30537 1.47316 0.86390 0.77136 0.84291 0.78286 1.20717 1.21486 1.20568 1.21777 1.00191 0.92016 0.93259 1.22233 0.99554 0.96820 0.95490 1.22168 1.00981 0.95078 0.97586 1.22108 1.01394 0.96726 0.95221 1.22727 1.00017 0.97836 0.95603 1.62050 1.51461 1.06272 1.03104 1.21626 0.95796 0.96510 0.90250 1.21563 0.99317 0.97222 0.96896 1.21498 0.99531 0.95978 0.97696 1.21550 1.00819 0.97709 0.94729 1.22611 0.93807 0.94469 0.98937 0.95951 0.93483 0.92542 0.94020 0.91619 0.92826 0.95020 0.92976 0.91239 0.92408 0.90914 0.92630 0.91820 0.99260 0.92056 0.92266 0.93402 0.91047 0.92706 0.92903 0.90579 0.97183 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.59 6.68 71.98 0.48 -6.11 16 2 C 0.24 10.89 0.11 2.78 0.00 10.90 16 3 C -0.53 -27.37 5.54 25.60 0.14 -27.23 16 4 H 0.03 1.78 7.76 -2.91 -0.02 1.76 16 5 C 0.06 2.96 3.95 84.65 0.33 3.29 16 6 N -0.86 -46.18 10.88 21.45 0.23 -45.95 16 7 Si 0.91 42.67 29.54 68.60 2.03 44.69 16 8 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 9 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 C -0.05 -2.30 2.11 -9.50 -0.02 -2.32 16 12 C -0.10 -4.17 5.50 31.74 0.17 -4.00 16 13 C -0.12 -3.92 6.81 31.39 0.21 -3.71 16 14 C -0.12 -3.57 6.80 31.32 0.21 -3.36 16 15 C -0.12 -4.45 4.23 31.67 0.13 -4.32 16 16 N -0.51 -22.48 3.79 -851.07 -3.23 -25.70 16 17 C 0.09 3.88 4.68 86.33 0.40 4.29 16 18 C -0.11 -4.21 6.10 30.65 0.19 -4.03 16 19 C -0.11 -3.41 6.00 30.67 0.18 -3.23 16 20 C -0.11 -3.55 6.10 30.65 0.19 -3.36 16 21 C 0.03 1.11 4.05 86.33 0.35 1.46 16 22 H 0.02 0.93 7.49 -2.39 -0.02 0.91 16 23 H 0.05 1.90 6.21 -2.39 -0.01 1.88 16 24 H 0.06 2.09 4.45 -2.39 -0.01 2.08 16 25 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 26 H 0.07 3.40 6.36 -2.38 -0.02 3.39 16 27 H 0.05 2.14 5.96 -2.38 -0.01 2.12 16 28 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 33 H 0.06 2.02 6.74 -2.39 -0.02 2.00 16 34 H 0.06 2.17 5.15 -2.39 -0.01 2.16 16 35 H -0.01 -0.48 7.51 -2.38 -0.02 -0.50 16 36 H 0.06 3.17 5.45 -2.38 -0.01 3.16 16 37 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 42 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.01 0.38 6.67 -2.39 -0.02 0.36 16 44 H 0.08 3.03 3.69 -2.39 -0.01 3.02 16 Total: -1.00 -54.60 305.52 2.98 -51.62 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: 0.96 Total: 17.06 kcal Atomic # 6 Polarization: -44.71 SS G_CDS: 2.98 Total: -41.73 kcal Atomic # 7 Polarization: -68.66 SS G_CDS: -2.99 Total: -71.65 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -54.60 2.98 -51.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.771 kcal (2) G-P(sol) polarization free energy of solvation -54.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.51 seconds