Wall clock time and date at job start Mon Mar 30 2020 07:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47142 * 2 1 4 4 H 1.08006 * 120.00042 * 357.39706 * 3 2 1 5 5 C 1.37874 * 120.00015 * 177.39665 * 3 2 1 6 6 N 1.31508 * 120.00219 * 6.63369 * 5 3 2 7 7 Si 1.86807 * 119.99933 * 186.62696 * 5 3 2 8 8 H 1.48502 * 109.46842 * 90.00370 * 7 5 3 9 9 H 1.48492 * 109.47298 * 210.00017 * 7 5 3 10 10 H 1.48504 * 109.47078 * 330.00538 * 7 5 3 11 11 C 1.53003 * 109.46967 * 119.99497 * 2 1 3 12 12 C 1.54894 * 110.75329 * 44.29517 * 11 2 1 13 13 C 1.54470 * 104.10103 * 203.89277 * 12 11 2 14 14 C 1.53880 * 106.68410 * 23.34354 * 13 12 11 15 15 C 1.54266 * 106.59657 * 0.15592 * 14 13 12 16 16 N 1.46895 * 109.47521 * 239.99562 * 2 1 3 17 17 C 1.46839 * 111.00236 * 317.53932 * 16 2 1 18 18 C 1.53036 * 109.52598 * 185.83720 * 17 16 2 19 19 C 1.53122 * 109.27830 * 300.81793 * 18 17 16 20 20 C 1.53122 * 109.15507 * 57.65540 * 19 18 17 21 21 C 1.46848 * 110.99674 * 81.74888 * 16 2 1 22 22 H 1.08996 * 109.46805 * 174.67858 * 1 2 3 23 23 H 1.08997 * 109.47119 * 294.68421 * 1 2 3 24 24 H 1.09001 * 109.46467 * 54.68483 * 1 2 3 25 25 H 0.97005 * 120.00020 * 179.97438 * 6 5 3 26 26 H 1.08996 * 110.67570 * 167.53038 * 11 2 1 27 27 H 1.08993 * 110.48787 * 322.41764 * 12 11 2 28 28 H 1.08996 * 110.48415 * 85.06732 * 12 11 2 29 29 H 1.09001 * 109.85611 * 264.10512 * 13 12 11 30 30 H 1.08995 * 110.12377 * 142.72687 * 13 12 11 31 31 H 1.09001 * 110.03029 * 240.87952 * 14 13 12 32 32 H 1.08999 * 110.07097 * 119.46337 * 14 13 12 33 33 H 1.09002 * 110.48534 * 217.70971 * 15 14 13 34 34 H 1.09009 * 110.59750 * 95.12698 * 15 14 13 35 35 H 1.09002 * 109.46474 * 65.81966 * 17 16 2 36 36 H 1.08999 * 109.46340 * 305.85872 * 17 16 2 37 37 H 1.09000 * 109.50400 * 180.87689 * 18 17 16 38 38 H 1.08994 * 109.50388 * 60.76308 * 18 17 16 39 39 H 1.09001 * 109.52111 * 177.55677 * 19 18 17 40 40 H 1.08993 * 109.52506 * 297.75183 * 19 18 17 41 41 H 1.09004 * 109.50483 * 62.28613 * 20 19 18 42 42 H 1.09008 * 109.49957 * 182.40589 * 20 19 18 43 43 H 1.09000 * 109.46295 * 294.17609 * 21 16 2 44 44 H 1.08995 * 109.46505 * 54.14570 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 1.3314 2.2414 -0.0425 5 6 3.3867 1.6732 0.0542 6 7 4.2445 0.6795 -0.0256 7 14 4.0034 3.4266 0.2410 8 1 4.1367 3.7534 1.6835 9 1 5.3260 3.5593 -0.4209 10 1 3.0375 4.3610 -0.3910 11 6 2.0400 -0.7212 1.2493 12 6 1.2455 -2.0286 1.4911 13 6 1.4074 -2.2931 3.0043 14 6 1.7232 -0.9365 3.6586 15 6 1.7388 0.1074 2.5229 16 7 2.0198 -0.6925 -1.1993 17 6 1.2418 -1.9107 -1.4582 18 6 1.8684 -2.6798 -2.6234 19 6 1.8840 -1.7878 -3.8678 20 6 2.6593 -0.5046 -3.5564 21 6 2.0097 0.2015 -2.3642 22 1 -0.3633 -1.0232 -0.0953 23 1 -0.3633 0.4292 0.9337 24 1 -0.3632 0.5941 -0.8386 25 1 5.1974 0.8571 0.0122 26 1 3.1070 -0.9273 1.1661 27 1 0.1942 -1.8881 1.2403 28 1 1.6713 -2.8467 0.9101 29 1 2.2292 -2.9891 3.1727 30 1 0.4832 -2.6995 3.4150 31 1 2.6982 -0.9743 4.1444 32 1 0.9527 -0.6842 4.3871 33 1 2.5237 0.8444 2.6930 34 1 0.7686 0.5972 2.4388 35 1 0.2166 -1.6400 -1.7112 36 1 1.2420 -2.5381 -0.5669 37 1 1.2817 -3.5760 -2.8254 38 1 2.8889 -2.9629 -2.3657 39 1 2.3689 -2.3162 -4.6887 40 1 0.8614 -1.5364 -4.1487 41 1 3.6924 -0.7534 -3.3134 42 1 2.6376 0.1536 -4.4252 43 1 0.9810 0.4623 -2.6130 44 1 2.5678 1.1082 -2.1310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260517081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:39 Heat of formation + Delta-G solvation = -3.525911 kcal Electronic energy + Delta-G solvation = -20942.607985 eV Core-core repulsion = 18280.266697 eV Total energy + Delta-G solvation = -2662.341288 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.03416 -36.68246 -33.86467 -31.84770 -29.88622 -29.08479 -27.74944 -26.37532 -25.23389 -23.36987 -21.78203 -20.60796 -19.40551 -18.52640 -17.86249 -16.11708 -15.37223 -14.57824 -14.39008 -14.09794 -13.57672 -13.46082 -13.16857 -12.97652 -12.52491 -12.31511 -12.01629 -11.77443 -11.36255 -11.06932 -10.92059 -10.80724 -10.63879 -10.48803 -10.34125 -10.20302 -10.10524 -10.00674 -9.86421 -9.72925 -9.51262 -9.31197 -9.03902 -8.82751 -8.54872 -8.24260 -6.55584 -5.83634 -3.94470 3.32327 3.40730 3.43591 4.47855 5.14026 5.45546 5.54062 5.58536 5.62112 5.62886 5.68157 5.78335 6.15637 6.19604 6.30595 6.33007 6.35251 6.44641 6.46545 6.47556 6.51717 6.56677 6.60223 6.62079 6.67910 6.68886 6.79874 6.80980 6.84832 6.92462 6.96525 7.07399 7.13327 7.18510 7.30503 7.44920 7.48943 7.77941 7.90411 8.12500 8.30164 8.76329 8.93486 9.20322 9.67779 11.15413 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.013133 C = 0.008028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.857069 B = 2131.523937 C = 3486.883841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.246 3.754 3 C -0.523 4.523 4 H 0.051 0.949 5 C 0.086 3.914 6 N -0.839 5.839 7 Si 0.868 3.132 8 H -0.282 1.282 9 H -0.288 1.288 10 H -0.277 1.277 11 C -0.050 4.050 12 C -0.138 4.138 13 C -0.121 4.121 14 C -0.127 4.127 15 C -0.096 4.096 16 N -0.491 5.491 17 C 0.034 3.966 18 C -0.113 4.113 19 C -0.115 4.115 20 C -0.117 4.117 21 C 0.082 3.918 22 H 0.039 0.961 23 H 0.045 0.955 24 H 0.033 0.967 25 H 0.254 0.746 26 H 0.100 0.900 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.052 0.948 35 H 0.011 0.989 36 H 0.076 0.924 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.047 0.953 41 H 0.066 0.934 42 H 0.044 0.956 43 H -0.002 1.002 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 -4.880 -0.450 6.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.159 3.841 3 C -0.562 4.562 4 H 0.070 0.930 5 C -0.121 4.121 6 N -0.473 5.473 7 Si 0.696 3.304 8 H -0.208 1.208 9 H -0.214 1.214 10 H -0.202 1.202 11 C -0.069 4.069 12 C -0.175 4.175 13 C -0.159 4.159 14 C -0.165 4.165 15 C -0.134 4.134 16 N -0.214 5.214 17 C -0.094 4.094 18 C -0.151 4.151 19 C -0.153 4.153 20 C -0.155 4.155 21 C -0.047 4.047 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.065 0.935 26 H 0.118 0.882 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.094 0.906 37 H 0.064 0.936 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.085 0.915 42 H 0.063 0.937 43 H 0.016 0.984 44 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.301 -5.080 -0.367 6.069 hybrid contribution -0.501 1.208 -0.052 1.309 sum -3.802 -3.872 -0.419 5.443 Atomic orbital electron populations 1.22613 1.01588 0.98739 1.00017 1.18535 0.86406 0.92629 0.86575 1.20826 0.91515 0.90547 1.53280 0.93037 1.24854 0.97040 0.95481 0.94696 1.70110 1.01292 1.29534 1.46359 0.86993 0.78326 0.86793 0.78246 1.20789 1.21442 1.20191 1.21930 1.01266 0.90424 0.93326 1.22960 1.00576 1.00100 0.93882 1.22152 0.99521 0.97075 0.97138 1.22193 0.99748 0.96087 0.98447 1.22165 1.00780 0.96622 0.93843 1.62152 1.51762 1.04349 1.03173 1.22473 0.94221 0.95194 0.97559 1.21562 1.01216 0.96893 0.95465 1.21539 0.99449 0.97221 0.97093 1.21636 1.00482 0.95620 0.97730 1.21756 0.96513 0.97465 0.88920 0.94249 0.93628 0.94780 0.93549 0.88212 0.92372 0.92415 0.93074 0.93594 0.93054 0.93572 0.92208 0.92923 0.97053 0.90600 0.93641 0.91698 0.93562 0.93444 0.91549 0.93695 0.98382 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.57 6.57 37.16 0.24 -3.32 16 2 C 0.25 5.56 0.11 -132.75 -0.01 5.54 16 3 C -0.52 -13.10 5.23 -34.44 -0.18 -13.28 16 4 H 0.05 1.34 7.75 -52.48 -0.41 0.94 16 5 C 0.09 2.18 4.06 -17.82 -0.07 2.10 16 6 N -0.84 -21.94 11.08 55.43 0.61 -21.33 16 7 Si 0.87 20.23 29.54 -169.99 -5.02 15.21 16 8 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 9 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 10 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 11 C -0.05 -1.09 2.00 -88.62 -0.18 -1.27 16 12 C -0.14 -2.58 4.40 -24.96 -0.11 -2.69 16 13 C -0.12 -2.03 6.81 -25.50 -0.17 -2.20 16 14 C -0.13 -2.23 6.80 -25.61 -0.17 -2.40 16 15 C -0.10 -1.99 5.24 -25.07 -0.13 -2.12 16 16 N -0.49 -10.88 3.78 -220.36 -0.83 -11.71 16 17 C 0.03 0.66 4.10 -3.84 -0.02 0.64 16 18 C -0.11 -1.97 6.09 -26.65 -0.16 -2.13 16 19 C -0.12 -1.94 6.00 -26.60 -0.16 -2.10 16 20 C -0.12 -2.22 6.09 -26.65 -0.16 -2.39 16 21 C 0.08 1.80 4.76 -3.83 -0.02 1.78 16 22 H 0.04 0.76 4.36 -51.93 -0.23 0.53 16 23 H 0.04 0.93 6.45 -51.93 -0.33 0.59 16 24 H 0.03 0.72 7.54 -51.93 -0.39 0.33 16 25 H 0.25 6.56 8.31 -40.82 -0.34 6.22 16 26 H 0.10 2.52 6.65 -51.93 -0.35 2.18 16 27 H 0.06 1.07 5.43 -51.93 -0.28 0.79 16 28 H 0.06 1.08 6.28 -51.93 -0.33 0.75 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 1.35 8.10 -51.93 -0.42 0.93 16 34 H 0.05 1.09 6.37 -51.92 -0.33 0.76 16 35 H 0.01 0.23 6.54 -51.93 -0.34 -0.11 16 36 H 0.08 1.45 4.06 -51.93 -0.21 1.24 16 37 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.04 0.78 8.14 -51.92 -0.42 0.35 16 43 H 0.00 -0.04 7.51 -51.93 -0.39 -0.43 16 44 H 0.10 2.37 5.60 -51.93 -0.29 2.08 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -25.00 306.37 -9.59 -34.59 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: -7.66 Total: 2.45 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -1.31 Total: -23.83 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: -0.22 Total: -33.04 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -25.00 -9.59 -34.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.060 kcal (2) G-P(sol) polarization free energy of solvation -24.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds