Wall clock time and date at job start Mon Mar 30 2020 07:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.47142 * 2 1 4 4 H 1.08006 * 120.00042 * 357.39706 * 3 2 1 5 5 C 1.37874 * 120.00015 * 177.39665 * 3 2 1 6 6 N 1.31508 * 120.00219 * 6.63369 * 5 3 2 7 7 Si 1.86807 * 119.99933 * 186.62696 * 5 3 2 8 8 H 1.48502 * 109.46842 * 90.00370 * 7 5 3 9 9 H 1.48492 * 109.47298 * 210.00017 * 7 5 3 10 10 H 1.48504 * 109.47078 * 330.00538 * 7 5 3 11 11 C 1.53003 * 109.46967 * 119.99497 * 2 1 3 12 12 C 1.54894 * 110.75329 * 44.29517 * 11 2 1 13 13 C 1.54470 * 104.10103 * 203.89277 * 12 11 2 14 14 C 1.53880 * 106.68410 * 23.34354 * 13 12 11 15 15 C 1.54266 * 106.59657 * 0.15592 * 14 13 12 16 16 N 1.46895 * 109.47521 * 239.99562 * 2 1 3 17 17 C 1.46839 * 111.00236 * 317.53932 * 16 2 1 18 18 C 1.53036 * 109.52598 * 185.83720 * 17 16 2 19 19 C 1.53122 * 109.27830 * 300.81793 * 18 17 16 20 20 C 1.53122 * 109.15507 * 57.65540 * 19 18 17 21 21 C 1.46848 * 110.99674 * 81.74888 * 16 2 1 22 22 H 1.08996 * 109.46805 * 174.67858 * 1 2 3 23 23 H 1.08997 * 109.47119 * 294.68421 * 1 2 3 24 24 H 1.09001 * 109.46467 * 54.68483 * 1 2 3 25 25 H 0.97005 * 120.00020 * 179.97438 * 6 5 3 26 26 H 1.08996 * 110.67570 * 167.53038 * 11 2 1 27 27 H 1.08993 * 110.48787 * 322.41764 * 12 11 2 28 28 H 1.08996 * 110.48415 * 85.06732 * 12 11 2 29 29 H 1.09001 * 109.85611 * 264.10512 * 13 12 11 30 30 H 1.08995 * 110.12377 * 142.72687 * 13 12 11 31 31 H 1.09001 * 110.03029 * 240.87952 * 14 13 12 32 32 H 1.08999 * 110.07097 * 119.46337 * 14 13 12 33 33 H 1.09002 * 110.48534 * 217.70971 * 15 14 13 34 34 H 1.09009 * 110.59750 * 95.12698 * 15 14 13 35 35 H 1.09002 * 109.46474 * 65.81966 * 17 16 2 36 36 H 1.08999 * 109.46340 * 305.85872 * 17 16 2 37 37 H 1.09000 * 109.50400 * 180.87689 * 18 17 16 38 38 H 1.08994 * 109.50388 * 60.76308 * 18 17 16 39 39 H 1.09001 * 109.52111 * 177.55677 * 19 18 17 40 40 H 1.08993 * 109.52506 * 297.75183 * 19 18 17 41 41 H 1.09004 * 109.50483 * 62.28613 * 20 19 18 42 42 H 1.09008 * 109.49957 * 182.40589 * 20 19 18 43 43 H 1.09000 * 109.46295 * 294.17609 * 21 16 2 44 44 H 1.08995 * 109.46505 * 54.14570 * 21 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 1.3314 2.2414 -0.0425 5 6 3.3867 1.6732 0.0542 6 7 4.2445 0.6795 -0.0256 7 14 4.0034 3.4266 0.2410 8 1 4.1367 3.7534 1.6835 9 1 5.3260 3.5593 -0.4209 10 1 3.0375 4.3610 -0.3910 11 6 2.0400 -0.7212 1.2493 12 6 1.2455 -2.0286 1.4911 13 6 1.4074 -2.2931 3.0043 14 6 1.7232 -0.9365 3.6586 15 6 1.7388 0.1074 2.5229 16 7 2.0198 -0.6925 -1.1993 17 6 1.2418 -1.9107 -1.4582 18 6 1.8684 -2.6798 -2.6234 19 6 1.8840 -1.7878 -3.8678 20 6 2.6593 -0.5046 -3.5564 21 6 2.0097 0.2015 -2.3642 22 1 -0.3633 -1.0232 -0.0953 23 1 -0.3633 0.4292 0.9337 24 1 -0.3632 0.5941 -0.8386 25 1 5.1974 0.8571 0.0122 26 1 3.1070 -0.9273 1.1661 27 1 0.1942 -1.8881 1.2403 28 1 1.6713 -2.8467 0.9101 29 1 2.2292 -2.9891 3.1727 30 1 0.4832 -2.6995 3.4150 31 1 2.6982 -0.9743 4.1444 32 1 0.9527 -0.6842 4.3871 33 1 2.5237 0.8444 2.6930 34 1 0.7686 0.5972 2.4388 35 1 0.2166 -1.6400 -1.7112 36 1 1.2420 -2.5381 -0.5669 37 1 1.2817 -3.5760 -2.8254 38 1 2.8889 -2.9629 -2.3657 39 1 2.3689 -2.3162 -4.6887 40 1 0.8614 -1.5364 -4.1487 41 1 3.6924 -0.7534 -3.3134 42 1 2.6376 0.1536 -4.4252 43 1 0.9810 0.4623 -2.6130 44 1 2.5678 1.1082 -2.1310 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260517081.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:38 Heat of formation + Delta-G solvation = -15.275154 kcal Electronic energy + Delta-G solvation = -20943.117470 eV Core-core repulsion = 18280.266697 eV Total energy + Delta-G solvation = -2662.850773 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.68998 -38.21364 -35.50565 -33.69199 -31.47551 -30.70298 -29.28218 -27.99666 -27.09766 -25.00478 -23.37551 -22.20651 -20.85842 -20.08472 -19.64051 -17.95979 -16.95936 -16.47739 -15.95514 -15.69682 -15.26345 -14.93268 -14.80932 -14.53280 -14.10014 -13.87581 -13.62026 -13.49587 -12.99058 -12.84239 -12.53912 -12.51795 -12.39814 -12.28746 -11.86062 -11.82365 -11.68161 -11.56238 -11.48753 -11.31694 -10.98948 -10.88931 -10.77856 -10.45350 -10.37066 -10.16145 -8.26824 -7.81425 -5.95342 1.40136 1.46024 1.50048 2.52047 3.30550 3.75996 4.08860 4.13592 4.16172 4.19425 4.26263 4.31265 4.60172 4.67868 4.74365 4.82864 4.85770 4.86119 4.90837 4.98266 5.03890 5.04418 5.07582 5.11337 5.16745 5.20058 5.28448 5.30806 5.33392 5.39129 5.42529 5.45861 5.50846 5.63176 5.69158 5.70743 5.77024 5.89966 6.04361 6.31241 6.45872 6.86031 7.16410 7.41384 7.68653 9.15094 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.013133 C = 0.008028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.857069 B = 2131.523937 C = 3486.883841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.238 3.762 3 C -0.526 4.526 4 H 0.032 0.968 5 C 0.059 3.941 6 N -0.855 5.855 7 Si 0.909 3.091 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.279 1.279 11 C -0.049 4.049 12 C -0.130 4.130 13 C -0.116 4.116 14 C -0.122 4.122 15 C -0.095 4.095 16 N -0.506 5.506 17 C 0.033 3.967 18 C -0.110 4.110 19 C -0.109 4.109 20 C -0.112 4.112 21 C 0.086 3.914 22 H 0.057 0.943 23 H 0.046 0.954 24 H 0.021 0.979 25 H 0.249 0.751 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.068 0.932 33 H 0.029 0.971 34 H 0.049 0.951 35 H 0.012 0.988 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.047 0.953 42 H 0.060 0.940 43 H -0.009 1.009 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.209 -6.581 -0.471 8.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.150 3.850 3 C -0.565 4.565 4 H 0.051 0.949 5 C -0.146 4.146 6 N -0.490 5.490 7 Si 0.737 3.263 8 H -0.209 1.209 9 H -0.216 1.216 10 H -0.205 1.205 11 C -0.068 4.068 12 C -0.167 4.167 13 C -0.153 4.153 14 C -0.160 4.160 15 C -0.134 4.134 16 N -0.229 5.229 17 C -0.095 4.095 18 C -0.148 4.148 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.042 4.042 22 H 0.076 0.924 23 H 0.065 0.935 24 H 0.040 0.960 25 H 0.059 0.941 26 H 0.080 0.920 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.078 0.922 43 H 0.009 0.991 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.512 -6.777 -0.388 8.151 hybrid contribution -0.137 1.791 -0.060 1.797 sum -4.649 -4.987 -0.448 6.832 Atomic orbital electron populations 1.22490 1.00301 0.99586 0.99527 1.18578 0.87414 0.91506 0.87456 1.20952 0.91264 0.91654 1.52644 0.94934 1.25193 0.97254 0.97344 0.94804 1.70212 1.00952 1.30393 1.47478 0.86356 0.77635 0.84441 0.77837 1.20886 1.21587 1.20462 1.21740 0.99398 0.92380 0.93321 1.22840 1.00146 0.98110 0.95605 1.22127 1.01187 0.96646 0.95380 1.22151 1.00701 0.95468 0.97647 1.22091 0.99365 0.96847 0.95052 1.62086 1.52781 1.05161 1.02912 1.22542 0.94029 0.94107 0.98859 1.21549 1.00790 0.97784 0.94687 1.21500 0.99689 0.95827 0.97668 1.21566 0.99383 0.97142 0.96909 1.21622 0.95684 0.96717 0.90225 0.92444 0.93539 0.95965 0.94109 0.91993 0.91710 0.92329 0.92343 0.90935 0.93010 0.91365 0.95235 0.93190 0.96959 0.90205 0.90576 0.92959 0.91038 0.92609 0.93460 0.92171 0.99061 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.59 6.57 71.98 0.47 -6.12 16 2 C 0.24 10.85 0.11 2.78 0.00 10.85 16 3 C -0.53 -27.16 5.23 25.60 0.13 -27.02 16 4 H 0.03 1.76 7.75 -2.91 -0.02 1.73 16 5 C 0.06 3.06 4.06 84.65 0.34 3.40 16 6 N -0.85 -46.19 11.08 21.45 0.24 -45.95 16 7 Si 0.91 42.72 29.54 68.60 2.03 44.74 16 8 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 9 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 C -0.05 -2.12 2.00 -9.50 -0.02 -2.14 16 12 C -0.13 -4.59 4.40 31.74 0.14 -4.45 16 13 C -0.12 -3.53 6.81 31.39 0.21 -3.32 16 14 C -0.12 -4.04 6.80 31.32 0.21 -3.82 16 15 C -0.10 -3.94 5.24 31.67 0.17 -3.77 16 16 N -0.51 -22.45 3.78 -851.10 -3.22 -25.67 16 17 C 0.03 1.21 4.10 86.33 0.35 1.57 16 18 C -0.11 -3.54 6.09 30.65 0.19 -3.35 16 19 C -0.11 -3.38 6.00 30.68 0.18 -3.20 16 20 C -0.11 -4.18 6.09 30.65 0.19 -4.00 16 21 C 0.09 3.82 4.76 86.33 0.41 4.23 16 22 H 0.06 2.12 4.36 -2.39 -0.01 2.11 16 23 H 0.05 1.86 6.45 -2.39 -0.02 1.84 16 24 H 0.02 0.92 7.54 -2.39 -0.02 0.91 16 25 H 0.25 13.29 8.31 -92.70 -0.77 12.51 16 26 H 0.06 3.19 6.65 -2.39 -0.02 3.18 16 27 H 0.06 2.20 5.43 -2.39 -0.01 2.19 16 28 H 0.06 2.06 6.28 -2.39 -0.02 2.05 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.85 16 31 H 0.05 1.69 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.03 1.35 8.10 -2.39 -0.02 1.33 16 34 H 0.05 2.05 6.37 -2.38 -0.02 2.04 16 35 H 0.01 0.46 6.54 -2.39 -0.02 0.44 16 36 H 0.08 2.89 4.06 -2.39 -0.01 2.88 16 37 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 38 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 40 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 43 H -0.01 -0.39 7.51 -2.39 -0.02 -0.41 16 44 H 0.06 3.06 5.60 -2.39 -0.01 3.04 16 Total: -1.00 -54.67 306.37 2.99 -51.68 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: 0.95 Total: 16.34 kcal Atomic # 6 Polarization: -44.13 SS G_CDS: 2.99 Total: -41.14 kcal Atomic # 7 Polarization: -68.64 SS G_CDS: -2.98 Total: -71.62 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.74 kcal Total: -54.67 2.99 -51.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260517081.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.401 kcal (2) G-P(sol) polarization free energy of solvation -54.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds