Wall clock time and date at job start Mon Mar 30 2020 07:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46952 * 2 1 4 4 N 1.46895 * 109.47255 * 120.00124 * 2 1 3 5 5 C 1.46903 * 111.00018 * 148.32483 * 4 2 1 6 6 C 1.53002 * 117.49997 * 13.82596 * 5 4 2 7 7 C 1.52999 * 117.49943 * 305.16483 * 5 4 2 8 8 C 1.46896 * 111.00181 * 272.27810 * 4 2 1 9 9 C 1.53002 * 109.46781 * 58.46163 * 8 4 2 10 10 C 1.52999 * 109.47076 * 179.97438 * 9 8 4 11 11 C 1.53004 * 109.47319 * 300.00078 * 10 9 8 12 12 C 1.50703 * 109.47089 * 180.02562 * 11 10 9 13 13 H 1.08000 * 120.00028 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99918 * 179.72718 * 12 11 10 15 15 N 1.31515 * 119.99648 * 0.27454 * 14 12 11 16 16 Si 1.86792 * 120.00039 * 180.27300 * 14 12 11 17 17 H 1.48497 * 109.47089 * 90.00019 * 16 14 12 18 18 H 1.48496 * 109.47361 * 209.99888 * 16 14 12 19 19 H 1.48501 * 109.47428 * 329.99908 * 16 14 12 20 20 C 1.52995 * 109.46954 * 60.00208 * 11 10 9 21 21 C 1.53004 * 109.47108 * 299.99749 * 20 11 10 22 22 H 1.09003 * 109.46790 * 289.50593 * 1 2 3 23 23 H 1.08997 * 109.47406 * 49.50743 * 1 2 3 24 24 H 1.08998 * 109.47157 * 169.51104 * 1 2 3 25 25 H 1.09001 * 109.47012 * 240.00049 * 2 1 3 26 26 H 1.09000 * 109.47196 * 303.72319 * 3 2 1 27 27 H 1.08995 * 109.47324 * 63.73266 * 3 2 1 28 28 H 1.09001 * 109.46767 * 183.73047 * 3 2 1 29 29 H 1.09003 * 115.54763 * 159.49029 * 5 4 2 30 30 H 1.09007 * 117.49428 * 359.97438 * 6 5 4 31 31 H 1.08992 * 117.50142 * 145.01896 * 6 5 4 32 32 H 1.09005 * 117.49827 * 214.97755 * 7 5 4 33 33 H 1.08997 * 117.50130 * 359.97438 * 7 5 4 34 34 H 1.08994 * 109.47363 * 298.46371 * 8 4 2 35 35 H 1.09004 * 109.47335 * 60.00454 * 9 8 4 36 36 H 1.08994 * 109.47304 * 299.99984 * 9 8 4 37 37 H 1.09005 * 109.47449 * 180.02562 * 10 9 8 38 38 H 1.08994 * 109.47076 * 60.00202 * 10 9 8 39 39 H 1.08994 * 109.47148 * 300.00080 * 11 10 9 40 40 H 0.97006 * 119.99617 * 180.02562 * 15 14 12 41 41 H 1.09004 * 109.47631 * 59.99497 * 20 11 10 42 42 H 1.09000 * 109.47379 * 180.02562 * 20 11 10 43 43 H 1.09002 * 109.47146 * 300.00562 * 21 20 11 44 44 H 1.08999 * 109.47424 * 179.97438 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 3.2956 -1.3698 0.9322 6 6 4.0386 -0.9959 -0.3520 7 6 3.3414 -2.3539 -0.2384 8 6 2.1438 0.2369 2.3301 9 6 0.7837 0.8768 2.6159 10 6 0.9128 1.8443 3.7941 11 6 1.3872 1.0804 5.0319 12 6 1.5137 2.0333 6.1925 13 1 1.2788 3.0792 6.0606 14 6 1.9234 1.5689 7.4244 15 7 2.2091 0.2952 7.5851 16 14 2.0729 2.7487 8.8648 17 1 0.7803 2.8064 9.5936 18 1 3.1386 2.2751 9.7841 19 1 2.4186 4.1026 8.3621 20 6 2.7473 0.4406 4.7461 21 6 2.6183 -0.5270 3.5680 22 1 -0.3633 0.3432 0.9687 23 1 -0.3634 0.6673 -0.7815 24 1 -0.3633 -1.0105 -0.1871 25 1 1.8933 -0.5138 -0.8900 26 1 1.6232 1.9752 -0.8547 27 1 1.7323 1.9366 0.9215 28 1 3.1279 1.4432 -0.0669 29 1 3.8963 -1.6045 1.8109 30 1 3.5804 -0.2476 -0.9988 31 1 5.1279 -0.9851 -0.3183 32 1 3.9726 -3.2360 -0.1299 33 1 2.4248 -2.4992 -0.8100 34 1 2.8665 1.0146 2.0836 35 1 0.0609 0.0990 2.8626 36 1 0.4455 1.4206 1.7340 37 1 -0.0563 2.2999 3.9980 38 1 1.6356 2.6221 3.5480 39 1 0.6644 0.3026 5.2780 40 1 2.4970 -0.0316 8.4519 41 1 3.4702 1.2184 4.4999 42 1 3.0851 -0.1040 5.6278 43 1 1.8953 -1.3048 3.8141 44 1 3.5873 -0.9825 3.3640 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260545373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:52 Heat of formation + Delta-G solvation = 32.572610 kcal Electronic energy + Delta-G solvation = -20022.939141 eV Core-core repulsion = 17362.163203 eV Total energy + Delta-G solvation = -2660.775939 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 251.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.09009 -36.91666 -34.72274 -32.59886 -31.06229 -29.28465 -28.04140 -27.18988 -24.39973 -22.38517 -22.26307 -21.29232 -20.89277 -18.74669 -18.37777 -16.83941 -16.21934 -15.40211 -14.78445 -14.33035 -14.14121 -13.65156 -13.21384 -13.05297 -12.98154 -12.50332 -11.99483 -11.81422 -11.69048 -11.55000 -11.45261 -11.26633 -11.01028 -10.90532 -10.76504 -10.63592 -10.53997 -10.34004 -10.16613 -10.06278 -9.91083 -9.70534 -9.28415 -8.69374 -8.57799 -8.24091 -7.81045 -5.92643 -3.98605 3.33050 3.39880 3.42969 3.79872 4.18551 4.48133 4.89464 4.99589 5.02141 5.10292 5.27698 5.36502 5.43874 5.55177 5.60748 5.65548 5.73532 5.82552 5.84907 5.95963 5.99350 6.02955 6.07689 6.14047 6.17783 6.30282 6.42354 6.49089 6.51203 6.56744 6.68161 6.76732 6.84423 7.03565 7.20527 7.31615 7.43400 7.51815 7.62168 7.81258 8.09532 8.22467 8.53655 9.05821 9.65722 11.12786 Molecular weight = 251.19amu Principal moments of inertia in cm(-1) A = 0.034917 B = 0.005552 C = 0.005127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.708193 B = 5042.032633 C = 5459.820218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.070 3.930 3 C -0.196 4.196 4 N -0.498 5.498 5 C 0.029 3.971 6 C -0.230 4.230 7 C -0.177 4.177 8 C 0.091 3.909 9 C -0.120 4.120 10 C -0.109 4.109 11 C 0.049 3.951 12 C -0.512 4.512 13 H 0.053 0.947 14 C 0.061 3.939 15 N -0.890 5.890 16 Si 0.887 3.113 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.275 1.275 20 C -0.107 4.107 21 C -0.110 4.110 22 H 0.082 0.918 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.075 0.925 26 H 0.053 0.947 27 H 0.082 0.918 28 H 0.054 0.946 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.043 0.957 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.044 0.956 39 H 0.025 0.975 40 H 0.259 0.741 41 H 0.030 0.970 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.892 -2.157 -15.112 15.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.038 4.038 3 C -0.255 4.255 4 N -0.220 5.220 5 C -0.081 4.081 6 C -0.269 4.269 7 C -0.215 4.215 8 C -0.016 4.016 9 C -0.157 4.157 10 C -0.147 4.147 11 C 0.031 3.969 12 C -0.550 4.550 13 H 0.071 0.929 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.716 3.284 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.200 1.200 20 C -0.145 4.145 21 C -0.148 4.148 22 H 0.100 0.900 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.073 0.927 29 H 0.142 0.858 30 H 0.117 0.883 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.043 0.957 40 H 0.068 0.932 41 H 0.049 0.951 42 H 0.110 0.890 43 H 0.079 0.921 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.582 -2.634 -14.827 15.071 hybrid contribution 0.816 1.137 0.501 1.487 sum 1.398 -1.496 -14.327 14.472 Atomic orbital electron populations 1.22246 0.94602 1.01506 1.03269 1.21742 0.95958 0.92838 0.93274 1.22788 1.01215 0.98060 1.03390 1.62126 1.24336 1.30460 1.05037 1.22791 0.92219 1.00680 0.92365 1.23681 0.99646 0.99384 1.04183 1.23049 1.02261 0.93218 1.02967 1.21732 0.97355 0.92791 0.89681 1.22102 0.96142 0.98960 0.98521 1.21648 0.99905 0.97405 0.95752 1.18644 0.93063 0.94559 0.90653 1.21253 1.44563 0.94819 0.94379 0.92920 1.24962 0.95493 0.94979 0.98570 1.69884 1.46324 1.13173 1.23572 0.86671 0.77678 0.81392 0.82700 1.20788 1.21337 1.20044 1.21596 0.99723 0.96921 0.96287 1.21764 0.99074 0.99107 0.94815 0.89962 0.93163 0.92787 0.90676 0.92785 0.89947 0.92734 0.85782 0.88267 0.89290 0.88845 0.88919 0.93957 0.91775 0.91853 0.93399 0.93715 0.95667 0.93152 0.95129 0.89001 0.92136 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 9.04 37.16 0.34 -1.63 16 2 C 0.07 0.90 2.21 -67.72 -0.15 0.76 16 3 C -0.20 -2.48 7.39 37.16 0.27 -2.21 16 4 N -0.50 -7.43 4.50 -210.85 -0.95 -8.38 16 5 C 0.03 0.40 5.80 -67.71 -0.39 0.01 16 6 C -0.23 -2.69 9.02 -26.69 -0.24 -2.93 16 7 C -0.18 -2.05 9.87 -26.69 -0.26 -2.31 16 8 C 0.09 1.55 1.35 -67.71 -0.09 1.46 16 9 C -0.12 -2.09 3.14 -26.73 -0.08 -2.17 16 10 C -0.11 -2.24 5.14 -26.73 -0.14 -2.38 16 11 C 0.05 1.21 2.10 -91.77 -0.19 1.02 16 12 C -0.51 -14.06 8.56 -34.44 -0.29 -14.35 16 13 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 14 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 15 N -0.89 -25.49 11.33 55.43 0.63 -24.86 16 16 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 20 C -0.11 -2.49 4.98 -26.73 -0.13 -2.63 16 21 C -0.11 -2.13 5.04 -26.73 -0.13 -2.27 16 22 H 0.08 1.12 4.25 -51.93 -0.22 0.90 16 23 H 0.05 0.54 8.10 -51.93 -0.42 0.12 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.08 0.92 4.87 -51.93 -0.25 0.66 16 26 H 0.05 0.59 8.13 -51.93 -0.42 0.17 16 27 H 0.08 1.16 4.29 -51.93 -0.22 0.94 16 28 H 0.05 0.69 6.68 -51.93 -0.35 0.35 16 29 H 0.12 1.79 5.86 -51.93 -0.30 1.49 16 30 H 0.10 1.14 4.93 -51.92 -0.26 0.88 16 31 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.09 1.07 7.47 -51.93 -0.39 0.68 16 34 H 0.04 0.75 6.44 -51.93 -0.33 0.41 16 35 H 0.06 1.17 7.75 -51.93 -0.40 0.77 16 36 H 0.06 0.98 3.81 -51.93 -0.20 0.78 16 37 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 2.42 6.08 -51.93 -0.32 2.11 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 44 H 0.04 0.74 6.04 -51.93 -0.31 0.43 16 LS Contribution 311.50 15.07 4.69 4.69 Total: -1.00 -27.45 311.50 -9.57 -37.02 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.32 Total: 3.22 kcal Atomic # 6 Polarization: -26.44 SS G_CDS: -1.60 Total: -28.04 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: -0.32 Total: -33.24 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.45 -9.57 -37.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260545373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.594 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds